data_2GXB
#
_model_server_result.job_id            XgSPs5LzbATy08q1QODDpA 
_model_server_result.datetime_utc      '2024-12-26 23:18:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gxb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":163}' 
#
_entry.id    2GXB 
#
_exptl.entry_id    2GXB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GXB 
_cell.length_a            73.603 
_cell.length_b            92.776 
_cell.length_c            50.229 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GXB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O2' C 4 E C 3 1_555 F NA NA . F NA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc2 A O2 C 4 E C 3 1_555 F NA NA . F NA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
metalc ? metalc3 A O2' C 6 E C 5 1_555 E NA NA . E NA 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc4 A O2 C 6 E C 5 1_555 E NA NA . E NA 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc5 H O HOH . E HOH 61 1_555 E NA NA . E NA 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc6 E NA NA . E NA 162 1_555 B O2' C 4 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc7 E NA NA . E NA 162 1_555 B O2 C 4 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc8 B OP1 C 4 F C 3 1_555 G NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc9 B O2' C 6 F C 5 1_555 F NA NA . F NA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc10 B O2 C 6 F C 5 1_555 F NA NA . F NA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc11 F NA NA . F NA 163 1_555 I O HOH . F HOH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc12 D OD1 ASN 37 B ASN 173 1_555 G NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc13 G NA NA . B NA 203 1_555 K O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
hydrog WATSON-CRICK hydrog1 A N3 C 2 E C 1 1_555 B N1 G 7 F G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 C 2 E C 1 1_555 B O6 G 7 F G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 C 2 E C 1 1_555 B N2 G 7 F G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 G 3 E G 2 1_555 B N3 C 6 F C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 G 3 E G 2 1_555 B O2 C 6 F C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 G 3 E G 2 1_555 B N4 C 6 F C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 C 4 E C 3 1_555 B N1 G 5 F G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 C 4 E C 3 1_555 B O6 G 5 F G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 C 4 E C 3 1_555 B N2 G 5 F G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 G 5 E G 4 1_555 B N3 C 4 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 G 5 E G 4 1_555 B O2 C 4 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 G 5 E G 4 1_555 B N4 C 4 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 C 6 E C 5 1_555 B N1 G 3 F G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N4 C 6 E C 5 1_555 B O6 G 3 F G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O2 C 6 E C 5 1_555 B N2 G 3 F G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 G 7 E G 6 1_555 B N3 C 2 F C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N2 G 7 E G 6 1_555 B O2 C 2 F C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O6 G 7 E G 6 1_555 B N4 C 2 F C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2GXB 
_atom_sites.fract_transf_matrix[1][1]    0.013586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010779 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NA E 1 162 162 NA NA . 
F 3 NA F 1 163 163 NA NA . 
G 3 NA B 1 203 161 NA NA . 
H 4 HOH E 1 7 7 HOH HOH . 
H 4 HOH E 2 8 8 HOH HOH . 
H 4 HOH E 3 14 14 HOH HOH . 
H 4 HOH E 4 20 20 HOH HOH . 
H 4 HOH E 5 21 21 HOH HOH . 
H 4 HOH E 6 32 32 HOH HOH . 
H 4 HOH E 7 36 36 HOH HOH . 
H 4 HOH E 8 41 41 HOH HOH . 
H 4 HOH E 9 43 43 HOH HOH . 
H 4 HOH E 10 45 45 HOH HOH . 
H 4 HOH E 11 46 46 HOH HOH . 
H 4 HOH E 12 47 47 HOH HOH . 
H 4 HOH E 13 52 52 HOH HOH . 
H 4 HOH E 14 60 60 HOH HOH . 
H 4 HOH E 15 61 61 HOH HOH . 
H 4 HOH E 16 62 62 HOH HOH . 
H 4 HOH E 17 65 65 HOH HOH . 
H 4 HOH E 18 78 78 HOH HOH . 
H 4 HOH E 19 83 83 HOH HOH . 
H 4 HOH E 20 91 91 HOH HOH . 
H 4 HOH E 21 100 100 HOH HOH . 
H 4 HOH E 22 103 103 HOH HOH . 
H 4 HOH E 23 108 108 HOH HOH . 
H 4 HOH E 24 119 119 HOH HOH . 
H 4 HOH E 25 123 123 HOH HOH . 
H 4 HOH E 26 125 125 HOH HOH . 
H 4 HOH E 27 132 132 HOH HOH . 
H 4 HOH E 28 142 142 HOH HOH . 
H 4 HOH E 29 143 143 HOH HOH . 
H 4 HOH E 30 151 151 HOH HOH . 
H 4 HOH E 31 154 154 HOH HOH . 
H 4 HOH E 32 156 156 HOH HOH . 
I 4 HOH F 1 164 2 HOH HOH . 
I 4 HOH F 2 165 3 HOH HOH . 
I 4 HOH F 3 166 5 HOH HOH . 
I 4 HOH F 4 167 6 HOH HOH . 
I 4 HOH F 5 168 10 HOH HOH . 
I 4 HOH F 6 169 11 HOH HOH . 
I 4 HOH F 7 170 19 HOH HOH . 
I 4 HOH F 8 171 25 HOH HOH . 
I 4 HOH F 9 172 29 HOH HOH . 
I 4 HOH F 10 173 30 HOH HOH . 
I 4 HOH F 11 174 33 HOH HOH . 
I 4 HOH F 12 175 38 HOH HOH . 
I 4 HOH F 13 176 49 HOH HOH . 
I 4 HOH F 14 177 50 HOH HOH . 
I 4 HOH F 15 178 51 HOH HOH . 
I 4 HOH F 16 179 73 HOH HOH . 
I 4 HOH F 17 180 79 HOH HOH . 
I 4 HOH F 18 181 82 HOH HOH . 
I 4 HOH F 19 182 84 HOH HOH . 
I 4 HOH F 20 183 85 HOH HOH . 
I 4 HOH F 21 184 90 HOH HOH . 
I 4 HOH F 22 185 99 HOH HOH . 
I 4 HOH F 23 186 120 HOH HOH . 
I 4 HOH F 24 187 124 HOH HOH . 
I 4 HOH F 25 188 127 HOH HOH . 
I 4 HOH F 26 189 129 HOH HOH . 
I 4 HOH F 27 190 130 HOH HOH . 
I 4 HOH F 28 191 148 HOH HOH . 
J 4 HOH A 1 203 15 HOH HOH . 
J 4 HOH A 2 204 16 HOH HOH . 
J 4 HOH A 3 205 18 HOH HOH . 
J 4 HOH A 4 206 22 HOH HOH . 
J 4 HOH A 5 207 27 HOH HOH . 
J 4 HOH A 6 208 28 HOH HOH . 
J 4 HOH A 7 209 35 HOH HOH . 
J 4 HOH A 8 210 37 HOH HOH . 
J 4 HOH A 9 211 40 HOH HOH . 
J 4 HOH A 10 212 48 HOH HOH . 
J 4 HOH A 11 213 53 HOH HOH . 
J 4 HOH A 12 214 56 HOH HOH . 
J 4 HOH A 13 215 58 HOH HOH . 
J 4 HOH A 14 216 59 HOH HOH . 
J 4 HOH A 15 217 63 HOH HOH . 
J 4 HOH A 16 218 64 HOH HOH . 
J 4 HOH A 17 219 72 HOH HOH . 
J 4 HOH A 18 220 74 HOH HOH . 
J 4 HOH A 19 221 93 HOH HOH . 
J 4 HOH A 20 222 94 HOH HOH . 
J 4 HOH A 21 223 96 HOH HOH . 
J 4 HOH A 22 224 98 HOH HOH . 
J 4 HOH A 23 225 104 HOH HOH . 
J 4 HOH A 24 226 106 HOH HOH . 
J 4 HOH A 25 227 107 HOH HOH . 
J 4 HOH A 26 228 110 HOH HOH . 
J 4 HOH A 27 229 111 HOH HOH . 
J 4 HOH A 28 230 115 HOH HOH . 
J 4 HOH A 29 231 116 HOH HOH . 
J 4 HOH A 30 232 117 HOH HOH . 
J 4 HOH A 31 233 121 HOH HOH . 
J 4 HOH A 32 234 122 HOH HOH . 
J 4 HOH A 33 235 133 HOH HOH . 
J 4 HOH A 34 236 138 HOH HOH . 
J 4 HOH A 35 237 139 HOH HOH . 
J 4 HOH A 36 238 140 HOH HOH . 
J 4 HOH A 37 239 141 HOH HOH . 
J 4 HOH A 38 240 144 HOH HOH . 
J 4 HOH A 39 241 146 HOH HOH . 
J 4 HOH A 40 242 147 HOH HOH . 
J 4 HOH A 41 243 149 HOH HOH . 
J 4 HOH A 42 244 153 HOH HOH . 
J 4 HOH A 43 245 155 HOH HOH . 
J 4 HOH A 44 246 157 HOH HOH . 
K 4 HOH B 1 204 1 HOH HOH . 
K 4 HOH B 2 205 4 HOH HOH . 
K 4 HOH B 3 206 9 HOH HOH . 
K 4 HOH B 4 207 12 HOH HOH . 
K 4 HOH B 5 208 13 HOH HOH . 
K 4 HOH B 6 209 17 HOH HOH . 
K 4 HOH B 7 210 23 HOH HOH . 
K 4 HOH B 8 211 24 HOH HOH . 
K 4 HOH B 9 212 26 HOH HOH . 
K 4 HOH B 10 213 31 HOH HOH . 
K 4 HOH B 11 214 34 HOH HOH . 
K 4 HOH B 12 215 39 HOH HOH . 
K 4 HOH B 13 216 42 HOH HOH . 
K 4 HOH B 14 217 44 HOH HOH . 
K 4 HOH B 15 218 54 HOH HOH . 
K 4 HOH B 16 219 55 HOH HOH . 
K 4 HOH B 17 220 57 HOH HOH . 
K 4 HOH B 18 221 66 HOH HOH . 
K 4 HOH B 19 222 67 HOH HOH . 
K 4 HOH B 20 223 68 HOH HOH . 
K 4 HOH B 21 224 69 HOH HOH . 
K 4 HOH B 22 225 70 HOH HOH . 
K 4 HOH B 23 226 71 HOH HOH . 
K 4 HOH B 24 227 75 HOH HOH . 
K 4 HOH B 25 228 76 HOH HOH . 
K 4 HOH B 26 229 77 HOH HOH . 
K 4 HOH B 27 230 80 HOH HOH . 
K 4 HOH B 28 231 81 HOH HOH . 
K 4 HOH B 29 232 86 HOH HOH . 
K 4 HOH B 30 233 87 HOH HOH . 
K 4 HOH B 31 234 88 HOH HOH . 
K 4 HOH B 32 235 89 HOH HOH . 
K 4 HOH B 33 236 92 HOH HOH . 
K 4 HOH B 34 237 95 HOH HOH . 
K 4 HOH B 35 238 97 HOH HOH . 
K 4 HOH B 36 239 101 HOH HOH . 
K 4 HOH B 37 240 102 HOH HOH . 
K 4 HOH B 38 241 105 HOH HOH . 
K 4 HOH B 39 242 109 HOH HOH . 
K 4 HOH B 40 243 112 HOH HOH . 
K 4 HOH B 41 244 113 HOH HOH . 
K 4 HOH B 42 245 114 HOH HOH . 
K 4 HOH B 43 246 118 HOH HOH . 
K 4 HOH B 44 247 126 HOH HOH . 
K 4 HOH B 45 248 128 HOH HOH . 
K 4 HOH B 46 249 131 HOH HOH . 
K 4 HOH B 47 250 134 HOH HOH . 
K 4 HOH B 48 251 135 HOH HOH . 
K 4 HOH B 49 252 136 HOH HOH . 
K 4 HOH B 50 253 137 HOH HOH . 
K 4 HOH B 51 254 145 HOH HOH . 
K 4 HOH B 52 255 150 HOH HOH . 
K 4 HOH B 53 256 152 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               46.989 
_atom_site.Cartn_y               1.464 
_atom_site.Cartn_z               42.33 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.87 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           163 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#