data_2GXF # _model_server_result.job_id '_efiJIl2C-2R0OBLe48HNA' _model_server_result.datetime_utc '2024-10-15 14:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 2GXF # _exptl.entry_id 2GXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GXF _cell.length_a 88.251 _cell.length_b 88.251 _cell.length_c 82.836 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C LEU 24 A LEU 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C MSE 25 A MSE 25 1_555 A N ASN 26 A ASN 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C GLY 39 A GLY 39 1_555 A N MSE 40 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 40 A MSE 40 1_555 A N ILE 41 A ILE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C LYS 69 A LYS 69 1_555 A N MSE 70 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C MSE 70 A MSE 70 1_555 A N ILE 71 A ILE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C MSE 98 A MSE 98 1_555 A N GLU 99 A GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C MSE 1 B MSE 1 1_555 B N GLU 2 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C LEU 24 B LEU 24 1_555 B N MSE 25 B MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C MSE 25 B MSE 25 1_555 B N ASN 26 B ASN 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 B C GLY 39 B GLY 39 1_555 B N MSE 40 B MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C MSE 40 B MSE 40 1_555 B N ILE 41 B ILE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 B C LYS 69 B LYS 69 1_555 B N MSE 70 B MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale15 B C MSE 70 B MSE 70 1_555 B N ILE 71 B ILE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale16 B C MSE 98 B MSE 98 1_555 B N GLU 99 B GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 C C MSE 1 C MSE 1 1_555 C N GLU 2 C GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 C C LEU 24 C LEU 24 1_555 C N MSE 25 C MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 C C MSE 25 C MSE 25 1_555 C N ASN 26 C ASN 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale20 C C GLY 39 C GLY 39 1_555 C N MSE 40 C MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale21 C C MSE 40 C MSE 40 1_555 C N ILE 41 C ILE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale22 C C LYS 69 C LYS 69 1_555 C N MSE 70 C MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 C C MSE 70 C MSE 70 1_555 C N ILE 71 C ILE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 C C MSE 98 C MSE 98 1_555 C N GLU 99 C GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 D C MSE 1 D MSE 1 1_555 D N GLU 2 D GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 D C LEU 24 D LEU 24 1_555 D N MSE 25 D MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 D C MSE 25 D MSE 25 1_555 D N ASN 26 D ASN 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale28 D C GLY 39 D GLY 39 1_555 D N MSE 40 D MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale29 D C MSE 40 D MSE 40 1_555 D N ILE 41 D ILE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale30 D C LYS 69 D LYS 69 1_555 D N MSE 70 D MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale31 D C MSE 70 D MSE 70 1_555 D N ILE 71 D ILE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale32 D C MSE 98 D MSE 98 1_555 D N GLU 99 D GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GXF _atom_sites.fract_transf_matrix[1][1] 0.011331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MES A 1 201 201 MES MES . F 2 MES B 1 201 201 MES MES . G 2 MES C 1 201 201 MES MES . H 2 MES D 1 201 201 MES MES . I 3 HOH A 1 202 1 HOH HOH . I 3 HOH A 2 203 2 HOH HOH . I 3 HOH A 3 204 3 HOH HOH . I 3 HOH A 4 205 4 HOH HOH . I 3 HOH A 5 206 5 HOH HOH . I 3 HOH A 6 207 6 HOH HOH . I 3 HOH A 7 208 7 HOH HOH . I 3 HOH A 8 209 8 HOH HOH . I 3 HOH A 9 210 9 HOH HOH . I 3 HOH A 10 211 19 HOH HOH . J 3 HOH B 1 202 10 HOH HOH . J 3 HOH B 2 203 11 HOH HOH . J 3 HOH B 3 204 12 HOH HOH . J 3 HOH B 4 205 13 HOH HOH . J 3 HOH B 5 206 14 HOH HOH . J 3 HOH B 6 207 15 HOH HOH . J 3 HOH B 7 208 16 HOH HOH . J 3 HOH B 8 209 17 HOH HOH . J 3 HOH B 9 210 18 HOH HOH . J 3 HOH B 10 211 33 HOH HOH . K 3 HOH C 1 202 20 HOH HOH . K 3 HOH C 2 203 21 HOH HOH . K 3 HOH C 3 204 22 HOH HOH . K 3 HOH C 4 205 23 HOH HOH . K 3 HOH C 5 206 24 HOH HOH . K 3 HOH C 6 207 25 HOH HOH . K 3 HOH C 7 208 26 HOH HOH . K 3 HOH C 8 209 32 HOH HOH . L 3 HOH D 1 202 27 HOH HOH . L 3 HOH D 2 203 28 HOH HOH . L 3 HOH D 3 204 29 HOH HOH . L 3 HOH D 4 205 30 HOH HOH . L 3 HOH D 5 206 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . F 2 39.298 75.882 9.337 1 31.86 ? O1 MES 201 B 1 HETATM 2 C C2 MES . . . F 2 40.149 77.08 9.372 1 29.8 ? C2 MES 201 B 1 HETATM 3 C C3 MES . . . F 2 41.484 76.87 8.602 1 28.65 ? C3 MES 201 B 1 HETATM 4 N N4 MES . . . F 2 42.171 75.667 9.139 1 29.97 ? N4 MES 201 B 1 HETATM 5 C C5 MES . . . F 2 41.277 74.421 9.021 1 31.04 ? C5 MES 201 B 1 HETATM 6 C C6 MES . . . F 2 39.954 74.658 9.823 1 30.76 ? C6 MES 201 B 1 HETATM 7 C C7 MES . . . F 2 43.429 75.47 8.382 1 31.83 ? C7 MES 201 B 1 HETATM 8 C C8 MES . . . F 2 44.642 76.205 8.996 1 34.13 ? C8 MES 201 B 1 HETATM 9 S S MES . . . F 2 45.821 74.994 9.571 1 34.97 ? S MES 201 B 1 HETATM 10 O O1S MES . . . F 2 45.166 74.279 10.969 1 34.93 ? O1S MES 201 B 1 HETATM 11 O O2S MES . . . F 2 47.176 75.737 9.911 1 33.68 ? O2S MES 201 B 1 HETATM 12 O O3S MES . . . F 2 46.036 73.912 8.464 1 33.31 ? O3S MES 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #