data_2GZD # _model_server_result.job_id l6NIQVJt_ITbCYbAJBLZfQ _model_server_result.datetime_utc '2024-11-26 05:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":950}' # _entry.id 2GZD # _exptl.entry_id 2GZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GZD _cell.length_a 64.364 _cell.length_b 91.149 _cell.length_c 113.099 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 119 A ILE 119 1_555 A N MSE 120 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 120 A MSE 120 1_555 A N LEU 121 A LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C ILE 119 B ILE 119 1_555 B N MSE 120 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C MSE 120 B MSE 120 1_555 B N LEU 121 B LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C VAL 83 C VAL 488 1_555 C N MSE 84 C MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C MSE 84 C MSE 489 1_555 C N GLU 85 C GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 D C VAL 83 D VAL 488 1_555 D N MSE 84 D MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 D C MSE 84 D MSE 489 1_555 D N GLU 85 D GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OG SER 25 A SER 25 1_555 E MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A OG1 THR 43 A THR 43 1_555 E MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc3 F O2G GTP . A GTP 900 1_555 E MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 F O2B GTP . A GTP 900 1_555 E MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 E MG MG . A MG 950 1_555 I O HOH . A HOH 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 B OG SER 25 B SER 25 1_555 G MG MG . B MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc7 B OG1 THR 43 B THR 43 1_555 G MG MG . B MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc8 H O2G GTP . B GTP 900 1_555 G MG MG . B MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc9 H O2B GTP . B GTP 900 1_555 G MG MG . B MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc10 G MG MG . B MG 950 1_555 J O HOH . B HOH 986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GZD _atom_sites.fract_transf_matrix[1][1] 0.015537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 950 950 MG MG . F 4 GTP A 1 900 900 GTP GTP . G 3 MG B 1 950 950 MG MG . H 4 GTP B 1 900 900 GTP GTP . I 5 HOH A 1 951 2 HOH HOH . I 5 HOH A 2 952 3 HOH HOH . I 5 HOH A 3 953 4 HOH HOH . I 5 HOH A 4 954 5 HOH HOH . I 5 HOH A 5 955 6 HOH HOH . I 5 HOH A 6 956 8 HOH HOH . I 5 HOH A 7 957 9 HOH HOH . I 5 HOH A 8 958 11 HOH HOH . I 5 HOH A 9 959 16 HOH HOH . I 5 HOH A 10 960 17 HOH HOH . I 5 HOH A 11 961 20 HOH HOH . I 5 HOH A 12 962 27 HOH HOH . I 5 HOH A 13 963 28 HOH HOH . I 5 HOH A 14 964 30 HOH HOH . I 5 HOH A 15 965 33 HOH HOH . I 5 HOH A 16 966 34 HOH HOH . I 5 HOH A 17 967 41 HOH HOH . I 5 HOH A 18 968 42 HOH HOH . I 5 HOH A 19 969 46 HOH HOH . I 5 HOH A 20 970 47 HOH HOH . I 5 HOH A 21 971 51 HOH HOH . I 5 HOH A 22 972 54 HOH HOH . I 5 HOH A 23 973 56 HOH HOH . I 5 HOH A 24 974 57 HOH HOH . I 5 HOH A 25 975 58 HOH HOH . I 5 HOH A 26 976 68 HOH HOH . I 5 HOH A 27 977 70 HOH HOH . I 5 HOH A 28 978 71 HOH HOH . I 5 HOH A 29 979 72 HOH HOH . J 5 HOH B 1 951 1 HOH HOH . J 5 HOH B 2 952 7 HOH HOH . J 5 HOH B 3 953 10 HOH HOH . J 5 HOH B 4 954 12 HOH HOH . J 5 HOH B 5 955 14 HOH HOH . J 5 HOH B 6 956 15 HOH HOH . J 5 HOH B 7 957 19 HOH HOH . J 5 HOH B 8 958 22 HOH HOH . J 5 HOH B 9 959 23 HOH HOH . J 5 HOH B 10 960 25 HOH HOH . J 5 HOH B 11 961 29 HOH HOH . J 5 HOH B 12 962 31 HOH HOH . J 5 HOH B 13 963 32 HOH HOH . J 5 HOH B 14 964 35 HOH HOH . J 5 HOH B 15 965 36 HOH HOH . J 5 HOH B 16 966 39 HOH HOH . J 5 HOH B 17 967 40 HOH HOH . J 5 HOH B 18 968 44 HOH HOH . J 5 HOH B 19 969 45 HOH HOH . J 5 HOH B 20 970 48 HOH HOH . J 5 HOH B 21 971 49 HOH HOH . J 5 HOH B 22 972 50 HOH HOH . J 5 HOH B 23 973 52 HOH HOH . J 5 HOH B 24 974 53 HOH HOH . J 5 HOH B 25 975 59 HOH HOH . J 5 HOH B 26 976 60 HOH HOH . J 5 HOH B 27 977 63 HOH HOH . J 5 HOH B 28 978 64 HOH HOH . J 5 HOH B 29 979 66 HOH HOH . J 5 HOH B 30 980 69 HOH HOH . J 5 HOH B 31 981 73 HOH HOH . J 5 HOH B 32 982 74 HOH HOH . J 5 HOH B 33 983 75 HOH HOH . J 5 HOH B 34 984 76 HOH HOH . J 5 HOH B 35 985 77 HOH HOH . J 5 HOH B 36 986 78 HOH HOH . K 5 HOH C 1 18 18 HOH HOH . K 5 HOH C 2 26 26 HOH HOH . K 5 HOH C 3 37 37 HOH HOH . K 5 HOH C 4 38 38 HOH HOH . K 5 HOH C 5 55 55 HOH HOH . K 5 HOH C 6 65 65 HOH HOH . L 5 HOH D 1 13 13 HOH HOH . L 5 HOH D 2 21 21 HOH HOH . L 5 HOH D 3 24 24 HOH HOH . L 5 HOH D 4 43 43 HOH HOH . L 5 HOH D 5 61 61 HOH HOH . L 5 HOH D 6 62 62 HOH HOH . L 5 HOH D 7 79 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.444 _atom_site.Cartn_y 29.514 _atom_site.Cartn_z 25.575 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 950 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #