data_2GZE # _model_server_result.job_id rdAysaRnD5EJFN_FqAjRIg _model_server_result.datetime_utc '2024-10-13 05:13:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 2GZE # _exptl.entry_id 2GZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GZE _cell.length_a 44.761 _cell.length_b 52.459 _cell.length_c 87.636 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B ND1 HIS 102 B HIS 102 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 B NE2 HIS 127 B HIS 127 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 B NE2 HIS 131 B HIS 131 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 C ZN ZN . B ZN 301 1_555 D O3 PO4 . B PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 2GZE _atom_sites.fract_transf_matrix[1][1] 0.02234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 301 301 ZN ZN . D 4 PO4 B 1 403 403 PO4 PO4 . E 5 HOH A 1 87 4 HOH HOH . E 5 HOH A 2 88 9 HOH HOH . E 5 HOH A 3 89 11 HOH HOH . E 5 HOH A 4 90 12 HOH HOH . E 5 HOH A 5 91 14 HOH HOH . E 5 HOH A 6 92 15 HOH HOH . E 5 HOH A 7 93 19 HOH HOH . E 5 HOH A 8 94 20 HOH HOH . E 5 HOH A 9 95 22 HOH HOH . E 5 HOH A 10 96 24 HOH HOH . E 5 HOH A 11 97 26 HOH HOH . E 5 HOH A 12 98 27 HOH HOH . E 5 HOH A 13 99 29 HOH HOH . E 5 HOH A 14 100 30 HOH HOH . E 5 HOH A 15 101 34 HOH HOH . E 5 HOH A 16 102 35 HOH HOH . E 5 HOH A 17 103 38 HOH HOH . E 5 HOH A 18 104 41 HOH HOH . E 5 HOH A 19 105 46 HOH HOH . E 5 HOH A 20 106 50 HOH HOH . E 5 HOH A 21 107 52 HOH HOH . E 5 HOH A 22 108 54 HOH HOH . E 5 HOH A 23 109 55 HOH HOH . E 5 HOH A 24 110 59 HOH HOH . E 5 HOH A 25 111 60 HOH HOH . E 5 HOH A 26 112 66 HOH HOH . E 5 HOH A 27 113 67 HOH HOH . E 5 HOH A 28 114 72 HOH HOH . E 5 HOH A 29 115 74 HOH HOH . E 5 HOH A 30 116 75 HOH HOH . E 5 HOH A 31 117 78 HOH HOH . E 5 HOH A 32 118 80 HOH HOH . E 5 HOH A 33 119 81 HOH HOH . E 5 HOH A 34 120 85 HOH HOH . E 5 HOH A 35 121 88 HOH HOH . E 5 HOH A 36 122 89 HOH HOH . E 5 HOH A 37 123 90 HOH HOH . E 5 HOH A 38 124 93 HOH HOH . E 5 HOH A 39 125 94 HOH HOH . E 5 HOH A 40 126 97 HOH HOH . E 5 HOH A 41 127 98 HOH HOH . E 5 HOH A 42 128 101 HOH HOH . E 5 HOH A 43 129 103 HOH HOH . E 5 HOH A 44 130 104 HOH HOH . E 5 HOH A 45 131 105 HOH HOH . E 5 HOH A 46 132 110 HOH HOH . E 5 HOH A 47 133 111 HOH HOH . E 5 HOH A 48 134 113 HOH HOH . E 5 HOH A 49 135 117 HOH HOH . E 5 HOH A 50 136 120 HOH HOH . E 5 HOH A 51 137 121 HOH HOH . E 5 HOH A 52 138 125 HOH HOH . E 5 HOH A 53 139 126 HOH HOH . E 5 HOH A 54 140 127 HOH HOH . E 5 HOH A 55 141 130 HOH HOH . E 5 HOH A 56 142 131 HOH HOH . E 5 HOH A 57 143 132 HOH HOH . E 5 HOH A 58 144 134 HOH HOH . E 5 HOH A 59 145 136 HOH HOH . E 5 HOH A 60 146 137 HOH HOH . E 5 HOH A 61 147 140 HOH HOH . E 5 HOH A 62 148 141 HOH HOH . E 5 HOH A 63 149 143 HOH HOH . E 5 HOH A 64 150 145 HOH HOH . E 5 HOH A 65 151 149 HOH HOH . E 5 HOH A 66 152 151 HOH HOH . E 5 HOH A 67 153 152 HOH HOH . E 5 HOH A 68 154 157 HOH HOH . E 5 HOH A 69 155 158 HOH HOH . E 5 HOH A 70 156 159 HOH HOH . E 5 HOH A 71 157 161 HOH HOH . E 5 HOH A 72 158 162 HOH HOH . E 5 HOH A 73 159 165 HOH HOH . E 5 HOH A 74 160 167 HOH HOH . E 5 HOH A 75 161 168 HOH HOH . E 5 HOH A 76 162 172 HOH HOH . E 5 HOH A 77 163 173 HOH HOH . E 5 HOH A 78 164 174 HOH HOH . E 5 HOH A 79 165 177 HOH HOH . E 5 HOH A 80 166 178 HOH HOH . E 5 HOH A 81 167 179 HOH HOH . E 5 HOH A 82 168 181 HOH HOH . E 5 HOH A 83 169 183 HOH HOH . E 5 HOH A 84 170 185 HOH HOH . E 5 HOH A 85 171 186 HOH HOH . E 5 HOH A 86 172 187 HOH HOH . E 5 HOH A 87 173 189 HOH HOH . E 5 HOH A 88 174 191 HOH HOH . E 5 HOH A 89 175 194 HOH HOH . E 5 HOH A 90 176 199 HOH HOH . E 5 HOH A 91 177 200 HOH HOH . E 5 HOH A 92 178 202 HOH HOH . E 5 HOH A 93 179 203 HOH HOH . E 5 HOH A 94 180 206 HOH HOH . E 5 HOH A 95 181 207 HOH HOH . E 5 HOH A 96 182 208 HOH HOH . E 5 HOH A 97 183 209 HOH HOH . E 5 HOH A 98 184 216 HOH HOH . E 5 HOH A 99 185 218 HOH HOH . E 5 HOH A 100 186 219 HOH HOH . E 5 HOH A 101 187 221 HOH HOH . E 5 HOH A 102 188 222 HOH HOH . E 5 HOH A 103 189 223 HOH HOH . E 5 HOH A 104 190 226 HOH HOH . E 5 HOH A 105 191 229 HOH HOH . E 5 HOH A 106 192 231 HOH HOH . E 5 HOH A 107 193 237 HOH HOH . E 5 HOH A 108 194 241 HOH HOH . E 5 HOH A 109 195 244 HOH HOH . E 5 HOH A 110 196 245 HOH HOH . E 5 HOH A 111 197 252 HOH HOH . E 5 HOH A 112 198 253 HOH HOH . E 5 HOH A 113 199 254 HOH HOH . E 5 HOH A 114 200 255 HOH HOH . E 5 HOH A 115 201 256 HOH HOH . E 5 HOH A 116 202 266 HOH HOH . E 5 HOH A 117 203 267 HOH HOH . E 5 HOH A 118 204 277 HOH HOH . E 5 HOH A 119 205 279 HOH HOH . E 5 HOH A 120 206 280 HOH HOH . E 5 HOH A 121 207 281 HOH HOH . E 5 HOH A 122 208 282 HOH HOH . E 5 HOH A 123 209 284 HOH HOH . E 5 HOH A 124 210 286 HOH HOH . E 5 HOH A 125 211 289 HOH HOH . F 5 HOH B 1 404 1 HOH HOH . F 5 HOH B 2 405 2 HOH HOH . F 5 HOH B 3 406 3 HOH HOH . F 5 HOH B 4 407 5 HOH HOH . F 5 HOH B 5 408 6 HOH HOH . F 5 HOH B 6 409 7 HOH HOH . F 5 HOH B 7 410 8 HOH HOH . F 5 HOH B 8 411 10 HOH HOH . F 5 HOH B 9 412 13 HOH HOH . F 5 HOH B 10 413 16 HOH HOH . F 5 HOH B 11 414 17 HOH HOH . F 5 HOH B 12 415 18 HOH HOH . F 5 HOH B 13 416 21 HOH HOH . F 5 HOH B 14 417 23 HOH HOH . F 5 HOH B 15 418 25 HOH HOH . F 5 HOH B 16 419 28 HOH HOH . F 5 HOH B 17 420 31 HOH HOH . F 5 HOH B 18 421 32 HOH HOH . F 5 HOH B 19 422 33 HOH HOH . F 5 HOH B 20 423 36 HOH HOH . F 5 HOH B 21 424 37 HOH HOH . F 5 HOH B 22 425 39 HOH HOH . F 5 HOH B 23 426 40 HOH HOH . F 5 HOH B 24 427 42 HOH HOH . F 5 HOH B 25 428 43 HOH HOH . F 5 HOH B 26 429 44 HOH HOH . F 5 HOH B 27 430 45 HOH HOH . F 5 HOH B 28 431 47 HOH HOH . F 5 HOH B 29 432 48 HOH HOH . F 5 HOH B 30 433 49 HOH HOH . F 5 HOH B 31 434 51 HOH HOH . F 5 HOH B 32 435 53 HOH HOH . F 5 HOH B 33 436 56 HOH HOH . F 5 HOH B 34 437 57 HOH HOH . F 5 HOH B 35 438 58 HOH HOH . F 5 HOH B 36 439 61 HOH HOH . F 5 HOH B 37 440 62 HOH HOH . F 5 HOH B 38 441 63 HOH HOH . F 5 HOH B 39 442 64 HOH HOH . F 5 HOH B 40 443 65 HOH HOH . F 5 HOH B 41 444 68 HOH HOH . F 5 HOH B 42 445 69 HOH HOH . F 5 HOH B 43 446 70 HOH HOH . F 5 HOH B 44 447 71 HOH HOH . F 5 HOH B 45 448 73 HOH HOH . F 5 HOH B 46 449 76 HOH HOH . F 5 HOH B 47 450 77 HOH HOH . F 5 HOH B 48 451 79 HOH HOH . F 5 HOH B 49 452 82 HOH HOH . F 5 HOH B 50 453 83 HOH HOH . F 5 HOH B 51 454 84 HOH HOH . F 5 HOH B 52 455 86 HOH HOH . F 5 HOH B 53 456 87 HOH HOH . F 5 HOH B 54 457 91 HOH HOH . F 5 HOH B 55 458 92 HOH HOH . F 5 HOH B 56 459 95 HOH HOH . F 5 HOH B 57 460 96 HOH HOH . F 5 HOH B 58 461 99 HOH HOH . F 5 HOH B 59 462 100 HOH HOH . F 5 HOH B 60 463 102 HOH HOH . F 5 HOH B 61 464 106 HOH HOH . F 5 HOH B 62 465 107 HOH HOH . F 5 HOH B 63 466 108 HOH HOH . F 5 HOH B 64 467 109 HOH HOH . F 5 HOH B 65 468 112 HOH HOH . F 5 HOH B 66 469 114 HOH HOH . F 5 HOH B 67 470 115 HOH HOH . F 5 HOH B 68 471 116 HOH HOH . F 5 HOH B 69 472 118 HOH HOH . F 5 HOH B 70 473 119 HOH HOH . F 5 HOH B 71 474 122 HOH HOH . F 5 HOH B 72 475 123 HOH HOH . F 5 HOH B 73 476 124 HOH HOH . F 5 HOH B 74 477 128 HOH HOH . F 5 HOH B 75 478 129 HOH HOH . F 5 HOH B 76 479 133 HOH HOH . F 5 HOH B 77 480 135 HOH HOH . F 5 HOH B 78 481 138 HOH HOH . F 5 HOH B 79 482 139 HOH HOH . F 5 HOH B 80 483 142 HOH HOH . F 5 HOH B 81 484 144 HOH HOH . F 5 HOH B 82 485 146 HOH HOH . F 5 HOH B 83 486 147 HOH HOH . F 5 HOH B 84 487 148 HOH HOH . F 5 HOH B 85 488 150 HOH HOH . F 5 HOH B 86 489 153 HOH HOH . F 5 HOH B 87 490 154 HOH HOH . F 5 HOH B 88 491 155 HOH HOH . F 5 HOH B 89 492 156 HOH HOH . F 5 HOH B 90 493 160 HOH HOH . F 5 HOH B 91 494 163 HOH HOH . F 5 HOH B 92 495 164 HOH HOH . F 5 HOH B 93 496 166 HOH HOH . F 5 HOH B 94 497 169 HOH HOH . F 5 HOH B 95 498 170 HOH HOH . F 5 HOH B 96 499 171 HOH HOH . F 5 HOH B 97 500 175 HOH HOH . F 5 HOH B 98 501 176 HOH HOH . F 5 HOH B 99 502 180 HOH HOH . F 5 HOH B 100 503 182 HOH HOH . F 5 HOH B 101 504 184 HOH HOH . F 5 HOH B 102 505 188 HOH HOH . F 5 HOH B 103 506 190 HOH HOH . F 5 HOH B 104 507 192 HOH HOH . F 5 HOH B 105 508 193 HOH HOH . F 5 HOH B 106 509 195 HOH HOH . F 5 HOH B 107 510 196 HOH HOH . F 5 HOH B 108 511 197 HOH HOH . F 5 HOH B 109 512 198 HOH HOH . F 5 HOH B 110 513 201 HOH HOH . F 5 HOH B 111 514 204 HOH HOH . F 5 HOH B 112 515 205 HOH HOH . F 5 HOH B 113 516 210 HOH HOH . F 5 HOH B 114 517 211 HOH HOH . F 5 HOH B 115 518 212 HOH HOH . F 5 HOH B 116 519 213 HOH HOH . F 5 HOH B 117 520 214 HOH HOH . F 5 HOH B 118 521 215 HOH HOH . F 5 HOH B 119 522 217 HOH HOH . F 5 HOH B 120 523 220 HOH HOH . F 5 HOH B 121 524 224 HOH HOH . F 5 HOH B 122 525 225 HOH HOH . F 5 HOH B 123 526 227 HOH HOH . F 5 HOH B 124 527 228 HOH HOH . F 5 HOH B 125 528 230 HOH HOH . F 5 HOH B 126 529 232 HOH HOH . F 5 HOH B 127 530 233 HOH HOH . F 5 HOH B 128 531 234 HOH HOH . F 5 HOH B 129 532 235 HOH HOH . F 5 HOH B 130 533 236 HOH HOH . F 5 HOH B 131 534 238 HOH HOH . F 5 HOH B 132 535 239 HOH HOH . F 5 HOH B 133 536 240 HOH HOH . F 5 HOH B 134 537 242 HOH HOH . F 5 HOH B 135 538 243 HOH HOH . F 5 HOH B 136 539 246 HOH HOH . F 5 HOH B 137 540 247 HOH HOH . F 5 HOH B 138 541 248 HOH HOH . F 5 HOH B 139 542 249 HOH HOH . F 5 HOH B 140 543 250 HOH HOH . F 5 HOH B 141 544 251 HOH HOH . F 5 HOH B 142 545 257 HOH HOH . F 5 HOH B 143 546 258 HOH HOH . F 5 HOH B 144 547 259 HOH HOH . F 5 HOH B 145 548 260 HOH HOH . F 5 HOH B 146 549 261 HOH HOH . F 5 HOH B 147 550 262 HOH HOH . F 5 HOH B 148 551 263 HOH HOH . F 5 HOH B 149 552 264 HOH HOH . F 5 HOH B 150 553 265 HOH HOH . F 5 HOH B 151 554 268 HOH HOH . F 5 HOH B 152 555 269 HOH HOH . F 5 HOH B 153 556 270 HOH HOH . F 5 HOH B 154 557 271 HOH HOH . F 5 HOH B 155 558 272 HOH HOH . F 5 HOH B 156 559 273 HOH HOH . F 5 HOH B 157 560 274 HOH HOH . F 5 HOH B 158 561 275 HOH HOH . F 5 HOH B 159 562 276 HOH HOH . F 5 HOH B 160 563 278 HOH HOH . F 5 HOH B 161 564 283 HOH HOH . F 5 HOH B 162 565 285 HOH HOH . F 5 HOH B 163 566 287 HOH HOH . F 5 HOH B 164 567 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 10.473 13.965 34.744 1 14.65 ? P PO4 403 B 1 HETATM 2 O O1 PO4 . . . D 4 11.208 14.418 35.976 1 20.03 ? O1 PO4 403 B 1 HETATM 3 O O2 PO4 . . . D 4 9.299 13.151 35.254 1 21.33 ? O2 PO4 403 B 1 HETATM 4 O O3 PO4 . . . D 4 11.365 13.036 33.922 1 11.07 ? O3 PO4 403 B 1 HETATM 5 O O4 PO4 . . . D 4 9.894 15.118 33.968 1 17.61 ? O4 PO4 403 B 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #