data_2GZH # _model_server_result.job_id h_suOWp0rY4j4fMvLxFvgg _model_server_result.datetime_utc '2024-11-29 15:21:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 2GZH # _exptl.entry_id 2GZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GZH _cell.length_a 64.74 _cell.length_b 64.74 _cell.length_c 112.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 74.933333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 119 A ILE 119 1_555 A N MSE 120 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 120 A MSE 120 1_555 A N LEU 121 A LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C VAL 83 B VAL 488 1_555 B N MSE 84 B MSE 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 B C MSE 84 B MSE 489 1_555 B N GLU 85 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A OG SER 25 A SER 25 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A OG1 THR 43 A THR 43 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 G O HOH . A HOH 648 1_555 E MG MG . A MG 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc4 G O HOH . A HOH 655 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 G O HOH . A HOH 657 1_555 E MG MG . A MG 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc6 G O HOH . A HOH 658 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc7 F O2B GTP . A GTP 900 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc8 F O2G GTP . A GTP 900 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 316 n n P O2 PO4 sing 317 n n P O3 PO4 sing 318 n n P O4 PO4 sing 319 n n # _atom_sites.entry_id 2GZH _atom_sites.fract_transf_matrix[1][1] 0.015446 _atom_sites.fract_transf_matrix[1][2] 0.008918 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 901 901 PO4 PO4 . D 4 MG A 1 950 950 MG MG . E 4 MG A 1 951 951 MG MG . F 5 GTP A 1 900 900 GTP GTP . G 6 HOH A 1 503 503 HOH HOH . G 6 HOH A 2 505 505 HOH HOH . G 6 HOH A 3 508 508 HOH HOH . G 6 HOH A 4 509 509 HOH HOH . G 6 HOH A 5 510 510 HOH HOH . G 6 HOH A 6 511 511 HOH HOH . G 6 HOH A 7 512 512 HOH HOH . G 6 HOH A 8 513 513 HOH HOH . G 6 HOH A 9 514 514 HOH HOH . G 6 HOH A 10 515 515 HOH HOH . G 6 HOH A 11 516 516 HOH HOH . G 6 HOH A 12 517 517 HOH HOH . G 6 HOH A 13 518 518 HOH HOH . G 6 HOH A 14 519 519 HOH HOH . G 6 HOH A 15 521 521 HOH HOH . G 6 HOH A 16 524 524 HOH HOH . G 6 HOH A 17 525 525 HOH HOH . G 6 HOH A 18 526 526 HOH HOH . G 6 HOH A 19 527 527 HOH HOH . G 6 HOH A 20 528 528 HOH HOH . G 6 HOH A 21 529 529 HOH HOH . G 6 HOH A 22 530 530 HOH HOH . G 6 HOH A 23 531 531 HOH HOH . G 6 HOH A 24 532 532 HOH HOH . G 6 HOH A 25 533 533 HOH HOH . G 6 HOH A 26 534 534 HOH HOH . G 6 HOH A 27 535 535 HOH HOH . G 6 HOH A 28 536 536 HOH HOH . G 6 HOH A 29 538 538 HOH HOH . G 6 HOH A 30 539 539 HOH HOH . G 6 HOH A 31 540 540 HOH HOH . G 6 HOH A 32 541 541 HOH HOH . G 6 HOH A 33 542 542 HOH HOH . G 6 HOH A 34 543 543 HOH HOH . G 6 HOH A 35 544 544 HOH HOH . G 6 HOH A 36 546 546 HOH HOH . G 6 HOH A 37 547 547 HOH HOH . G 6 HOH A 38 548 548 HOH HOH . G 6 HOH A 39 549 549 HOH HOH . G 6 HOH A 40 550 550 HOH HOH . G 6 HOH A 41 551 551 HOH HOH . G 6 HOH A 42 552 552 HOH HOH . G 6 HOH A 43 553 553 HOH HOH . G 6 HOH A 44 554 554 HOH HOH . G 6 HOH A 45 555 555 HOH HOH . G 6 HOH A 46 557 557 HOH HOH . G 6 HOH A 47 558 558 HOH HOH . G 6 HOH A 48 559 559 HOH HOH . G 6 HOH A 49 560 560 HOH HOH . G 6 HOH A 50 562 562 HOH HOH . G 6 HOH A 51 563 563 HOH HOH . G 6 HOH A 52 564 564 HOH HOH . G 6 HOH A 53 565 565 HOH HOH . G 6 HOH A 54 568 568 HOH HOH . G 6 HOH A 55 570 570 HOH HOH . G 6 HOH A 56 571 571 HOH HOH . G 6 HOH A 57 572 572 HOH HOH . G 6 HOH A 58 573 573 HOH HOH . G 6 HOH A 59 574 574 HOH HOH . G 6 HOH A 60 575 575 HOH HOH . G 6 HOH A 61 576 576 HOH HOH . G 6 HOH A 62 577 577 HOH HOH . G 6 HOH A 63 578 578 HOH HOH . G 6 HOH A 64 579 579 HOH HOH . G 6 HOH A 65 580 580 HOH HOH . G 6 HOH A 66 581 581 HOH HOH . G 6 HOH A 67 582 582 HOH HOH . G 6 HOH A 68 583 583 HOH HOH . G 6 HOH A 69 584 584 HOH HOH . G 6 HOH A 70 585 585 HOH HOH . G 6 HOH A 71 586 586 HOH HOH . G 6 HOH A 72 587 587 HOH HOH . G 6 HOH A 73 588 588 HOH HOH . G 6 HOH A 74 589 589 HOH HOH . G 6 HOH A 75 590 590 HOH HOH . G 6 HOH A 76 591 591 HOH HOH . G 6 HOH A 77 592 592 HOH HOH . G 6 HOH A 78 593 593 HOH HOH . G 6 HOH A 79 594 594 HOH HOH . G 6 HOH A 80 595 595 HOH HOH . G 6 HOH A 81 596 596 HOH HOH . G 6 HOH A 82 597 597 HOH HOH . G 6 HOH A 83 598 598 HOH HOH . G 6 HOH A 84 600 600 HOH HOH . G 6 HOH A 85 601 601 HOH HOH . G 6 HOH A 86 602 602 HOH HOH . G 6 HOH A 87 603 603 HOH HOH . G 6 HOH A 88 604 604 HOH HOH . G 6 HOH A 89 605 605 HOH HOH . G 6 HOH A 90 606 606 HOH HOH . G 6 HOH A 91 607 607 HOH HOH . G 6 HOH A 92 608 608 HOH HOH . G 6 HOH A 93 609 609 HOH HOH . G 6 HOH A 94 610 610 HOH HOH . G 6 HOH A 95 611 611 HOH HOH . G 6 HOH A 96 613 613 HOH HOH . G 6 HOH A 97 615 615 HOH HOH . G 6 HOH A 98 616 616 HOH HOH . G 6 HOH A 99 617 617 HOH HOH . G 6 HOH A 100 620 620 HOH HOH . G 6 HOH A 101 622 622 HOH HOH . G 6 HOH A 102 623 623 HOH HOH . G 6 HOH A 103 626 626 HOH HOH . G 6 HOH A 104 628 628 HOH HOH . G 6 HOH A 105 629 629 HOH HOH . G 6 HOH A 106 631 631 HOH HOH . G 6 HOH A 107 632 632 HOH HOH . G 6 HOH A 108 633 633 HOH HOH . G 6 HOH A 109 641 641 HOH HOH . G 6 HOH A 110 644 644 HOH HOH . G 6 HOH A 111 645 645 HOH HOH . G 6 HOH A 112 647 647 HOH HOH . G 6 HOH A 113 648 648 HOH HOH . G 6 HOH A 114 649 649 HOH HOH . G 6 HOH A 115 650 650 HOH HOH . G 6 HOH A 116 651 651 HOH HOH . G 6 HOH A 117 652 652 HOH HOH . G 6 HOH A 118 653 653 HOH HOH . G 6 HOH A 119 654 654 HOH HOH . G 6 HOH A 120 655 655 HOH HOH . G 6 HOH A 121 656 656 HOH HOH . G 6 HOH A 122 657 657 HOH HOH . G 6 HOH A 123 658 658 HOH HOH . G 6 HOH A 124 659 659 HOH HOH . H 6 HOH B 1 627 627 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 14.733 21.224 6.97 1 81.94 ? P PO4 901 A 1 HETATM 2 O O1 PO4 . . . C 3 14.937 22.757 6.949 1 82.21 ? O1 PO4 901 A 1 HETATM 3 O O2 PO4 . . . C 3 13.474 21.028 6.046 1 80.53 ? O2 PO4 901 A 1 HETATM 4 O O3 PO4 . . . C 3 16.107 20.501 6.423 1 75.62 ? O3 PO4 901 A 1 HETATM 5 O O4 PO4 . . . C 3 14.313 20.725 8.46 1 78.22 ? O4 PO4 901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 5 #