data_2GZS
#
_model_server_result.job_id            ADuBIz5WWigdblMtfbNPmQ 
_model_server_result.datetime_utc      '2024-11-07 02:57:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gzs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1189}' 
#
_entry.id    2GZS 
#
_exptl.entry_id    2GZS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              166.155 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIISOPROPYL PHOSPHONATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         113.1 
_cell.angle_beta          93.99 
_cell.angle_gamma         98.08 
_cell.entry_id            2GZS 
_cell.length_a            36.295 
_cell.length_b            38.361 
_cell.length_c            44.631 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GZS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 47 A TYR 87 1_555 A N MSE 48 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale2 A C MSE 48 A MSE 88 1_555 A N LEU 49 A LEU 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale3 A C VAL 54 A VAL 94 1_555 A N MSE 55 A MSE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale4 A C MSE 55 A MSE 95 1_555 A N ASP 56 A ASP 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale5 A OG SER 149 A SER 189 1_555 B P DFP . A DFP 1189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.551 ? 
covale ? covale6 A C ILE 201 A ILE 241 1_555 A N MSE 202 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale7 A C MSE 202 A MSE 242 1_555 A N GLU 203 A GLU 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 A C PRO 249 A PRO 289 1_555 A N MSE 250 A MSE 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale9 A C MSE 250 A MSE 290 1_555 A N PHE 251 A PHE 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
#
_chem_comp.formula           'C6 H15 O3 P' 
_chem_comp.formula_weight    166.155 
_chem_comp.id                DFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIISOPROPYL PHOSPHONATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DFP sing 83 n n 
C1 C3 DFP sing 84 n n 
C1 O1P DFP sing 85 n n 
C1 H1 DFP sing 86 n n 
C2 H21 DFP sing 87 n n 
C2 H22 DFP sing 88 n n 
C2 H23 DFP sing 89 n n 
C3 H31 DFP sing 90 n n 
C3 H32 DFP sing 91 n n 
C3 H33 DFP sing 92 n n 
C1' C2' DFP sing 93 n n 
C1' C3' DFP sing 94 n n 
C1' O2P DFP sing 95 n n 
C1' H1' DFP sing 96 n n 
C2' "H2'1" DFP sing 97 n n 
C2' "H2'2" DFP sing 98 n n 
C2' "H2'3" DFP sing 99 n n 
C3' "H3'1" DFP sing 100 n n 
C3' "H3'2" DFP sing 101 n n 
C3' "H3'3" DFP sing 102 n n 
P O1P DFP sing 103 n n 
P O2P DFP sing 104 n n 
P O3P DFP doub 105 n n 
HP1 P DFP sing 106 n n 
#
_atom_sites.entry_id                     2GZS 
_atom_sites.fract_transf_matrix[1][1]    0.027552 
_atom_sites.fract_transf_matrix[1][2]    0.003911 
_atom_sites.fract_transf_matrix[1][3]    0.003848 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02633 
_atom_sites.fract_transf_matrix[2][3]    0.011736 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024591 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DFP A 1 1189 189 DFP DFP . 
C 3 HOH A 1 1190 1001 HOH HOH . 
C 3 HOH A 2 1191 1002 HOH HOH . 
C 3 HOH A 3 1192 1003 HOH HOH . 
C 3 HOH A 4 1193 1004 HOH HOH . 
C 3 HOH A 5 1194 1005 HOH HOH . 
C 3 HOH A 6 1195 1006 HOH HOH . 
C 3 HOH A 7 1196 1007 HOH HOH . 
C 3 HOH A 8 1197 1008 HOH HOH . 
C 3 HOH A 9 1198 1009 HOH HOH . 
C 3 HOH A 10 1199 1010 HOH HOH . 
C 3 HOH A 11 1200 1011 HOH HOH . 
C 3 HOH A 12 1201 1012 HOH HOH . 
C 3 HOH A 13 1202 1013 HOH HOH . 
C 3 HOH A 14 1203 1014 HOH HOH . 
C 3 HOH A 15 1204 1015 HOH HOH . 
C 3 HOH A 16 1205 1016 HOH HOH . 
C 3 HOH A 17 1206 1017 HOH HOH . 
C 3 HOH A 18 1207 1018 HOH HOH . 
C 3 HOH A 19 1208 1019 HOH HOH . 
C 3 HOH A 20 1209 1020 HOH HOH . 
C 3 HOH A 21 1210 1021 HOH HOH . 
C 3 HOH A 22 1211 1022 HOH HOH . 
C 3 HOH A 23 1212 1023 HOH HOH . 
C 3 HOH A 24 1213 1024 HOH HOH . 
C 3 HOH A 25 1214 1025 HOH HOH . 
C 3 HOH A 26 1215 1026 HOH HOH . 
C 3 HOH A 27 1216 1027 HOH HOH . 
C 3 HOH A 28 1217 1028 HOH HOH . 
C 3 HOH A 29 1218 1029 HOH HOH . 
C 3 HOH A 30 1219 1030 HOH HOH . 
C 3 HOH A 31 1220 1031 HOH HOH . 
C 3 HOH A 32 1221 1032 HOH HOH . 
C 3 HOH A 33 1222 1033 HOH HOH . 
C 3 HOH A 34 1223 1034 HOH HOH . 
C 3 HOH A 35 1224 1035 HOH HOH . 
C 3 HOH A 36 1225 1036 HOH HOH . 
C 3 HOH A 37 1226 1037 HOH HOH . 
C 3 HOH A 38 1227 1038 HOH HOH . 
C 3 HOH A 39 1228 1039 HOH HOH . 
C 3 HOH A 40 1229 1040 HOH HOH . 
C 3 HOH A 41 1230 1041 HOH HOH . 
C 3 HOH A 42 1231 1042 HOH HOH . 
C 3 HOH A 43 1232 1043 HOH HOH . 
C 3 HOH A 44 1233 1044 HOH HOH . 
C 3 HOH A 45 1234 1045 HOH HOH . 
C 3 HOH A 46 1235 1046 HOH HOH . 
C 3 HOH A 47 1236 1047 HOH HOH . 
C 3 HOH A 48 1237 1048 HOH HOH . 
C 3 HOH A 49 1238 1049 HOH HOH . 
C 3 HOH A 50 1239 1050 HOH HOH . 
C 3 HOH A 51 1240 1051 HOH HOH . 
C 3 HOH A 52 1241 1052 HOH HOH . 
C 3 HOH A 53 1242 1053 HOH HOH . 
C 3 HOH A 54 1243 1054 HOH HOH . 
C 3 HOH A 55 1244 1055 HOH HOH . 
C 3 HOH A 56 1245 1056 HOH HOH . 
C 3 HOH A 57 1246 1057 HOH HOH . 
C 3 HOH A 58 1247 1058 HOH HOH . 
C 3 HOH A 59 1248 1059 HOH HOH . 
C 3 HOH A 60 1249 1060 HOH HOH . 
C 3 HOH A 61 1250 1061 HOH HOH . 
C 3 HOH A 62 1251 1062 HOH HOH . 
C 3 HOH A 63 1252 1063 HOH HOH . 
C 3 HOH A 64 1253 1064 HOH HOH . 
C 3 HOH A 65 1254 1065 HOH HOH . 
C 3 HOH A 66 1255 1066 HOH HOH . 
C 3 HOH A 67 1256 1067 HOH HOH . 
C 3 HOH A 68 1257 1068 HOH HOH . 
C 3 HOH A 69 1258 1069 HOH HOH . 
C 3 HOH A 70 1259 1070 HOH HOH . 
C 3 HOH A 71 1260 1071 HOH HOH . 
C 3 HOH A 72 1261 1072 HOH HOH . 
C 3 HOH A 73 1262 1073 HOH HOH . 
C 3 HOH A 74 1263 1074 HOH HOH . 
C 3 HOH A 75 1264 1075 HOH HOH . 
C 3 HOH A 76 1265 1076 HOH HOH . 
C 3 HOH A 77 1266 1077 HOH HOH . 
C 3 HOH A 78 1267 1078 HOH HOH . 
C 3 HOH A 79 1268 1079 HOH HOH . 
C 3 HOH A 80 1269 1080 HOH HOH . 
C 3 HOH A 81 1270 1081 HOH HOH . 
C 3 HOH A 82 1271 1082 HOH HOH . 
C 3 HOH A 83 1272 1083 HOH HOH . 
C 3 HOH A 84 1273 1084 HOH HOH . 
C 3 HOH A 85 1274 1085 HOH HOH . 
C 3 HOH A 86 1275 1086 HOH HOH . 
C 3 HOH A 87 1276 1087 HOH HOH . 
C 3 HOH A 88 1277 1088 HOH HOH . 
C 3 HOH A 89 1278 1089 HOH HOH . 
C 3 HOH A 90 1279 1090 HOH HOH . 
C 3 HOH A 91 1280 1091 HOH HOH . 
C 3 HOH A 92 1281 1092 HOH HOH . 
C 3 HOH A 93 1282 1093 HOH HOH . 
C 3 HOH A 94 1283 1094 HOH HOH . 
C 3 HOH A 95 1284 1095 HOH HOH . 
C 3 HOH A 96 1285 1096 HOH HOH . 
C 3 HOH A 97 1286 1097 HOH HOH . 
C 3 HOH A 98 1287 1098 HOH HOH . 
C 3 HOH A 99 1288 1099 HOH HOH . 
C 3 HOH A 100 1289 1100 HOH HOH . 
C 3 HOH A 101 1290 1101 HOH HOH . 
C 3 HOH A 102 1291 1102 HOH HOH . 
C 3 HOH A 103 1292 1103 HOH HOH . 
C 3 HOH A 104 1293 1104 HOH HOH . 
C 3 HOH A 105 1294 1105 HOH HOH . 
C 3 HOH A 106 1295 1106 HOH HOH . 
C 3 HOH A 107 1296 1107 HOH HOH . 
C 3 HOH A 108 1297 1108 HOH HOH . 
C 3 HOH A 109 1298 1109 HOH HOH . 
C 3 HOH A 110 1299 1110 HOH HOH . 
C 3 HOH A 111 1300 1111 HOH HOH . 
C 3 HOH A 112 1301 1112 HOH HOH . 
C 3 HOH A 113 1302 1113 HOH HOH . 
C 3 HOH A 114 1303 1114 HOH HOH . 
C 3 HOH A 115 1304 1115 HOH HOH . 
C 3 HOH A 116 1305 1116 HOH HOH . 
C 3 HOH A 117 1306 1117 HOH HOH . 
C 3 HOH A 118 1307 1118 HOH HOH . 
C 3 HOH A 119 1308 1119 HOH HOH . 
C 3 HOH A 120 1309 1120 HOH HOH . 
C 3 HOH A 121 1310 1121 HOH HOH . 
C 3 HOH A 122 1311 1122 HOH HOH . 
C 3 HOH A 123 1312 1123 HOH HOH . 
C 3 HOH A 124 1313 1124 HOH HOH . 
C 3 HOH A 125 1314 1125 HOH HOH . 
C 3 HOH A 126 1315 1126 HOH HOH . 
C 3 HOH A 127 1316 1127 HOH HOH . 
C 3 HOH A 128 1317 1128 HOH HOH . 
C 3 HOH A 129 1318 1129 HOH HOH . 
C 3 HOH A 130 1319 1130 HOH HOH . 
C 3 HOH A 131 1320 1131 HOH HOH . 
C 3 HOH A 132 1321 1132 HOH HOH . 
C 3 HOH A 133 1322 1133 HOH HOH . 
C 3 HOH A 134 1323 1134 HOH HOH . 
C 3 HOH A 135 1324 1135 HOH HOH . 
C 3 HOH A 136 1325 1136 HOH HOH . 
C 3 HOH A 137 1326 1137 HOH HOH . 
C 3 HOH A 138 1327 1138 HOH HOH . 
C 3 HOH A 139 1328 1139 HOH HOH . 
C 3 HOH A 140 1329 1140 HOH HOH . 
C 3 HOH A 141 1330 1141 HOH HOH . 
C 3 HOH A 142 1331 1142 HOH HOH . 
C 3 HOH A 143 1332 1143 HOH HOH . 
C 3 HOH A 144 1333 1144 HOH HOH . 
C 3 HOH A 145 1334 1145 HOH HOH . 
C 3 HOH A 146 1335 1146 HOH HOH . 
C 3 HOH A 147 1336 1147 HOH HOH . 
C 3 HOH A 148 1337 1148 HOH HOH . 
C 3 HOH A 149 1338 1149 HOH HOH . 
C 3 HOH A 150 1339 1150 HOH HOH . 
C 3 HOH A 151 1340 1151 HOH HOH . 
C 3 HOH A 152 1341 1152 HOH HOH . 
C 3 HOH A 153 1342 1153 HOH HOH . 
C 3 HOH A 154 1343 1154 HOH HOH . 
C 3 HOH A 155 1344 1155 HOH HOH . 
C 3 HOH A 156 1345 1156 HOH HOH . 
C 3 HOH A 157 1346 1157 HOH HOH . 
C 3 HOH A 158 1347 1158 HOH HOH . 
C 3 HOH A 159 1348 1159 HOH HOH . 
C 3 HOH A 160 1349 1160 HOH HOH . 
C 3 HOH A 161 1350 1161 HOH HOH . 
C 3 HOH A 162 1351 1162 HOH HOH . 
C 3 HOH A 163 1352 1163 HOH HOH . 
C 3 HOH A 164 1353 1164 HOH HOH . 
C 3 HOH A 165 1354 1165 HOH HOH . 
C 3 HOH A 166 1355 1166 HOH HOH . 
C 3 HOH A 167 1356 1167 HOH HOH . 
C 3 HOH A 168 1357 1168 HOH HOH . 
C 3 HOH A 169 1358 1169 HOH HOH . 
C 3 HOH A 170 1359 1170 HOH HOH . 
C 3 HOH A 171 1360 1171 HOH HOH . 
C 3 HOH A 172 1361 1172 HOH HOH . 
C 3 HOH A 173 1362 1173 HOH HOH . 
C 3 HOH A 174 1363 1174 HOH HOH . 
C 3 HOH A 175 1364 1175 HOH HOH . 
C 3 HOH A 176 1365 1176 HOH HOH . 
C 3 HOH A 177 1366 1177 HOH HOH . 
C 3 HOH A 178 1367 1178 HOH HOH . 
C 3 HOH A 179 1368 1179 HOH HOH . 
C 3 HOH A 180 1369 1180 HOH HOH . 
C 3 HOH A 181 1370 1181 HOH HOH . 
C 3 HOH A 182 1371 1182 HOH HOH . 
C 3 HOH A 183 1372 1183 HOH HOH . 
C 3 HOH A 184 1373 1184 HOH HOH . 
C 3 HOH A 185 1374 1185 HOH HOH . 
C 3 HOH A 186 1375 1186 HOH HOH . 
C 3 HOH A 187 1376 1187 HOH HOH . 
C 3 HOH A 188 1377 1188 HOH HOH . 
C 3 HOH A 189 1378 1189 HOH HOH . 
C 3 HOH A 190 1379 1190 HOH HOH . 
C 3 HOH A 191 1380 1191 HOH HOH . 
C 3 HOH A 192 1381 1192 HOH HOH . 
C 3 HOH A 193 1382 1193 HOH HOH . 
C 3 HOH A 194 1383 1194 HOH HOH . 
C 3 HOH A 195 1384 1195 HOH HOH . 
C 3 HOH A 196 1385 1196 HOH HOH . 
C 3 HOH A 197 1386 1197 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DFP . . . B 2 2.863 42.107 -3.415 1 23.69 ? C1 DFP 1189 A 1 
HETATM 2 C C2 DFP . . . B 2 3.231 43.356 -4.22 1 27.12 ? C2 DFP 1189 A 1 
HETATM 3 C C3 DFP . . . B 2 1.779 42.376 -2.382 1 29.44 ? C3 DFP 1189 A 1 
HETATM 4 C C1' DFP . . . B 2 6.562 40.219 -5.201 1 18.54 ? C1' DFP 1189 A 1 
HETATM 5 C C2' DFP . . . B 2 6.209 38.828 -5.64 1 26.22 ? C2' DFP 1189 A 1 
HETATM 6 C C3' DFP . . . B 2 6.758 41.086 -6.49 1 29.73 ? C3' DFP 1189 A 1 
HETATM 7 P P DFP . . . B 2 5.06 40.59 -3.035 1 13.37 ? P DFP 1189 A 1 
HETATM 8 O O1P DFP . . . B 2 4.09 41.766 -2.695 1 17.13 ? O1P DFP 1189 A 1 
HETATM 9 O O2P DFP . . . B 2 5.457 40.797 -4.549 1 14.24 ? O2P DFP 1189 A 1 
HETATM 10 O O3P DFP . . . B 2 6.27 40.533 -2.116 1 12.17 ? O3P DFP 1189 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           10 
#