data_2GZX
#
_model_server_result.job_id            Blp18c9UHV46XVE65TIcPA 
_model_server_result.datetime_utc      '2024-12-01 02:11:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gzx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":298}' 
#
_entry.id    2GZX 
#
_exptl.entry_id    2GZX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.01 
_cell.angle_gamma         90 
_cell.entry_id            2GZX 
_cell.length_a            46.678 
_cell.length_b            77.324 
_cell.length_c            76.129 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GZX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 32 A ARG 32 1_555 A N MSE 33 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 33 A MSE 33 1_555 A N PHE 34 A PHE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C ALA 46 A ALA 46 1_555 A N MSE 47 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C MSE 47 A MSE 47 1_555 A N LYS 48 A LYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C GLU 92 A GLU 92 1_555 A N MSE 93 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale6 A C MSE 93 A MSE 93 1_555 A N GLY 94 A GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 A C ILE 151 A ILE 151 1_555 A N MSE 152 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 A C MSE 152 A MSE 152 1_555 A N HIS 153 A HIS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C SER 195 A SER 195 1_555 A N MSE 196 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MSE 196 A MSE 196 1_555 A N GLU 197 A GLU 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale11 B C ARG 32 B ARG 32 1_555 B N MSE 33 B MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale12 B C MSE 33 B MSE 33 1_555 B N PHE 34 B PHE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale13 B C ALA 46 B ALA 46 1_555 B N MSE 47 B MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 B C MSE 47 B MSE 47 1_555 B N LYS 48 B LYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 B C GLU 92 B GLU 92 1_555 B N MSE 93 B MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 B C MSE 93 B MSE 93 1_555 B N GLY 94 B GLY 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale17 B C ILE 151 B ILE 151 1_555 B N MSE 152 B MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 B C MSE 152 B MSE 152 1_555 B N HIS 153 B HIS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale19 B C SER 195 B SER 195 1_555 B N MSE 196 B MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale20 B C MSE 196 B MSE 196 1_555 B N GLU 197 B GLU 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 A NE2 HIS 6 A HIS 6 1_555 D NI NI . A NI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc2 A NE2 HIS 8 A HIS 8 1_555 D NI NI . A NI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 A OE2 GLU 92 A GLU 92 1_555 C NI NI . A NI 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc4 A ND1 HIS 128 A HIS 128 1_555 C NI NI . A NI 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc5 A NE2 HIS 153 A HIS 153 1_555 C NI NI . A NI 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc6 A OD1 ASP 204 A ASP 204 1_555 D NI NI . A NI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc7 C NI NI . A NI 299 1_555 G O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc8 B NE2 HIS 6 B HIS 6 1_555 E NI NI . B NI 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc9 B NE2 HIS 8 B HIS 8 1_555 E NI NI . B NI 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc10 B OE1 GLU 92 B GLU 92 1_555 E NI NI . B NI 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc11 B OE2 GLU 92 B GLU 92 1_555 F NI NI . B NI 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc12 B ND1 HIS 128 B HIS 128 1_555 F NI NI . B NI 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc13 B NE2 HIS 153 B HIS 153 1_555 F NI NI . B NI 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2GZX 
_atom_sites.fract_transf_matrix[1][1]    0.021423 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003015 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 299 299 NI NI . 
D 2 NI A 1 300 300 NI NI . 
E 2 NI B 1 297 297 NI NI . 
F 2 NI B 1 298 298 NI NI . 
G 3 HOH A 1 301 301 HOH HOH . 
G 3 HOH A 2 302 302 HOH HOH . 
G 3 HOH A 3 310 310 HOH HOH . 
G 3 HOH A 4 311 311 HOH HOH . 
G 3 HOH A 5 314 314 HOH HOH . 
G 3 HOH A 6 316 316 HOH HOH . 
G 3 HOH A 7 317 317 HOH HOH . 
G 3 HOH A 8 318 318 HOH HOH . 
G 3 HOH A 9 321 321 HOH HOH . 
G 3 HOH A 10 323 323 HOH HOH . 
G 3 HOH A 11 325 325 HOH HOH . 
G 3 HOH A 12 329 329 HOH HOH . 
G 3 HOH A 13 330 330 HOH HOH . 
G 3 HOH A 14 335 335 HOH HOH . 
G 3 HOH A 15 336 336 HOH HOH . 
G 3 HOH A 16 338 338 HOH HOH . 
G 3 HOH A 17 340 340 HOH HOH . 
G 3 HOH A 18 342 342 HOH HOH . 
G 3 HOH A 19 345 345 HOH HOH . 
G 3 HOH A 20 348 348 HOH HOH . 
G 3 HOH A 21 349 349 HOH HOH . 
G 3 HOH A 22 354 354 HOH HOH . 
G 3 HOH A 23 355 355 HOH HOH . 
G 3 HOH A 24 356 356 HOH HOH . 
G 3 HOH A 25 358 358 HOH HOH . 
G 3 HOH A 26 359 359 HOH HOH . 
G 3 HOH A 27 360 360 HOH HOH . 
G 3 HOH A 28 361 361 HOH HOH . 
G 3 HOH A 29 363 363 HOH HOH . 
G 3 HOH A 30 366 366 HOH HOH . 
G 3 HOH A 31 367 367 HOH HOH . 
G 3 HOH A 32 368 368 HOH HOH . 
G 3 HOH A 33 372 372 HOH HOH . 
G 3 HOH A 34 373 373 HOH HOH . 
G 3 HOH A 35 374 374 HOH HOH . 
G 3 HOH A 36 375 375 HOH HOH . 
G 3 HOH A 37 378 378 HOH HOH . 
G 3 HOH A 38 380 380 HOH HOH . 
G 3 HOH A 39 381 381 HOH HOH . 
G 3 HOH A 40 382 382 HOH HOH . 
G 3 HOH A 41 383 383 HOH HOH . 
H 3 HOH B 1 303 303 HOH HOH . 
H 3 HOH B 2 304 304 HOH HOH . 
H 3 HOH B 3 305 305 HOH HOH . 
H 3 HOH B 4 306 306 HOH HOH . 
H 3 HOH B 5 307 307 HOH HOH . 
H 3 HOH B 6 308 308 HOH HOH . 
H 3 HOH B 7 309 309 HOH HOH . 
H 3 HOH B 8 312 312 HOH HOH . 
H 3 HOH B 9 313 313 HOH HOH . 
H 3 HOH B 10 315 315 HOH HOH . 
H 3 HOH B 11 319 319 HOH HOH . 
H 3 HOH B 12 320 320 HOH HOH . 
H 3 HOH B 13 322 322 HOH HOH . 
H 3 HOH B 14 324 324 HOH HOH . 
H 3 HOH B 15 326 326 HOH HOH . 
H 3 HOH B 16 327 327 HOH HOH . 
H 3 HOH B 17 328 328 HOH HOH . 
H 3 HOH B 18 332 332 HOH HOH . 
H 3 HOH B 19 333 333 HOH HOH . 
H 3 HOH B 20 334 334 HOH HOH . 
H 3 HOH B 21 337 337 HOH HOH . 
H 3 HOH B 22 339 339 HOH HOH . 
H 3 HOH B 23 341 341 HOH HOH . 
H 3 HOH B 24 344 344 HOH HOH . 
H 3 HOH B 25 346 346 HOH HOH . 
H 3 HOH B 26 347 347 HOH HOH . 
H 3 HOH B 27 350 350 HOH HOH . 
H 3 HOH B 28 351 351 HOH HOH . 
H 3 HOH B 29 352 352 HOH HOH . 
H 3 HOH B 30 353 353 HOH HOH . 
H 3 HOH B 31 357 357 HOH HOH . 
H 3 HOH B 32 362 362 HOH HOH . 
H 3 HOH B 33 364 364 HOH HOH . 
H 3 HOH B 34 365 365 HOH HOH . 
H 3 HOH B 35 369 369 HOH HOH . 
H 3 HOH B 36 370 370 HOH HOH . 
H 3 HOH B 37 371 371 HOH HOH . 
H 3 HOH B 38 376 376 HOH HOH . 
H 3 HOH B 39 377 377 HOH HOH . 
H 3 HOH B 40 379 379 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               11.915 
_atom_site.Cartn_y               26.663 
_atom_site.Cartn_z               24.407 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30.19 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           298 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#