data_2H00 # _model_server_result.job_id feSTur8D-tjsixPVwUTxtQ _model_server_result.datetime_utc '2024-11-15 15:01:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 2H00 # _exptl.entry_id 2H00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2H00 _cell.length_a 133.737 _cell.length_b 133.737 _cell.length_c 78.833 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 I N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 294 n n N HN1 SAH sing 295 n n N HN2 SAH sing 296 n n CA CB SAH sing 297 n n CA C SAH sing 298 n n CA HA SAH sing 299 n n CB CG SAH sing 300 n n CB HB1 SAH sing 301 n n CB HB2 SAH sing 302 n n CG SD SAH sing 303 n n CG HG1 SAH sing 304 n n CG HG2 SAH sing 305 n n SD C5' SAH sing 306 n n C O SAH doub 307 n n C OXT SAH sing 308 n n OXT HXT SAH sing 309 n n C5' C4' SAH sing 310 n n C5' "H5'1" SAH sing 311 n n C5' "H5'2" SAH sing 312 n n C4' O4' SAH sing 313 n n C4' C3' SAH sing 314 n n C4' H4' SAH sing 315 n n O4' C1' SAH sing 316 n n C3' O3' SAH sing 317 n n C3' C2' SAH sing 318 n n C3' H3' SAH sing 319 n n O3' HO3' SAH sing 320 n n C2' O2' SAH sing 321 n n C2' C1' SAH sing 322 n n C2' H2' SAH sing 323 n n O2' HO2' SAH sing 324 n n C1' N9 SAH sing 325 n n C1' H1' SAH sing 326 n n N9 C8 SAH sing 327 n y N9 C4 SAH sing 328 n y C8 N7 SAH doub 329 n y C8 H8 SAH sing 330 n n N7 C5 SAH sing 331 n y C5 C6 SAH sing 332 n y C5 C4 SAH doub 333 n y C6 N6 SAH sing 334 n n C6 N1 SAH doub 335 n y N6 HN61 SAH sing 336 n n N6 HN62 SAH sing 337 n n N1 C2 SAH sing 338 n y C2 N3 SAH doub 339 n y C2 H2 SAH sing 340 n n N3 C4 SAH sing 341 n y # _atom_sites.entry_id 2H00 _atom_sites.fract_transf_matrix[1][1] 0.007477 _atom_sites.fract_transf_matrix[1][2] 0.004317 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SAH A 1 300 300 SAH SAH . E 3 DTU A 1 2140 2140 DTU DTU . F 4 CL B 1 401 401 CL CL . G 2 SAH B 1 301 301 SAH SAH . H 4 CL C 1 402 402 CL CL . I 2 SAH C 1 302 302 SAH SAH . J 5 HOH A 1 2141 2 HOH HOH . J 5 HOH A 2 2142 3 HOH HOH . J 5 HOH A 3 2143 5 HOH HOH . J 5 HOH A 4 2144 6 HOH HOH . J 5 HOH A 5 2145 7 HOH HOH . J 5 HOH A 6 2146 9 HOH HOH . J 5 HOH A 7 2147 12 HOH HOH . J 5 HOH A 8 2148 13 HOH HOH . J 5 HOH A 9 2149 14 HOH HOH . J 5 HOH A 10 2150 16 HOH HOH . J 5 HOH A 11 2151 17 HOH HOH . J 5 HOH A 12 2152 18 HOH HOH . J 5 HOH A 13 2153 20 HOH HOH . J 5 HOH A 14 2154 21 HOH HOH . J 5 HOH A 15 2155 22 HOH HOH . J 5 HOH A 16 2156 23 HOH HOH . J 5 HOH A 17 2157 24 HOH HOH . J 5 HOH A 18 2158 26 HOH HOH . J 5 HOH A 19 2159 27 HOH HOH . J 5 HOH A 20 2160 29 HOH HOH . J 5 HOH A 21 2161 31 HOH HOH . J 5 HOH A 22 2162 32 HOH HOH . J 5 HOH A 23 2163 38 HOH HOH . J 5 HOH A 24 2164 41 HOH HOH . J 5 HOH A 25 2165 44 HOH HOH . J 5 HOH A 26 2166 46 HOH HOH . J 5 HOH A 27 2167 49 HOH HOH . J 5 HOH A 28 2168 50 HOH HOH . J 5 HOH A 29 2169 51 HOH HOH . J 5 HOH A 30 2170 52 HOH HOH . J 5 HOH A 31 2171 55 HOH HOH . J 5 HOH A 32 2172 57 HOH HOH . J 5 HOH A 33 2173 58 HOH HOH . J 5 HOH A 34 2174 62 HOH HOH . J 5 HOH A 35 2175 64 HOH HOH . J 5 HOH A 36 2176 71 HOH HOH . J 5 HOH A 37 2177 73 HOH HOH . J 5 HOH A 38 2178 74 HOH HOH . J 5 HOH A 39 2179 77 HOH HOH . J 5 HOH A 40 2180 81 HOH HOH . J 5 HOH A 41 2181 86 HOH HOH . J 5 HOH A 42 2182 88 HOH HOH . J 5 HOH A 43 2183 95 HOH HOH . J 5 HOH A 44 2184 96 HOH HOH . J 5 HOH A 45 2185 98 HOH HOH . J 5 HOH A 46 2186 100 HOH HOH . J 5 HOH A 47 2187 102 HOH HOH . J 5 HOH A 48 2188 103 HOH HOH . J 5 HOH A 49 2189 104 HOH HOH . J 5 HOH A 50 2190 105 HOH HOH . J 5 HOH A 51 2191 107 HOH HOH . J 5 HOH A 52 2192 108 HOH HOH . J 5 HOH A 53 2193 109 HOH HOH . J 5 HOH A 54 2194 111 HOH HOH . J 5 HOH A 55 2195 112 HOH HOH . J 5 HOH A 56 2196 113 HOH HOH . J 5 HOH A 57 2197 117 HOH HOH . J 5 HOH A 58 2198 123 HOH HOH . J 5 HOH A 59 2199 125 HOH HOH . J 5 HOH A 60 2200 128 HOH HOH . J 5 HOH A 61 2201 129 HOH HOH . J 5 HOH A 62 2202 130 HOH HOH . J 5 HOH A 63 2203 133 HOH HOH . J 5 HOH A 64 2204 135 HOH HOH . J 5 HOH A 65 2205 136 HOH HOH . J 5 HOH A 66 2206 143 HOH HOH . J 5 HOH A 67 2207 144 HOH HOH . J 5 HOH A 68 2208 146 HOH HOH . J 5 HOH A 69 2209 148 HOH HOH . J 5 HOH A 70 2210 150 HOH HOH . J 5 HOH A 71 2211 151 HOH HOH . J 5 HOH A 72 2212 152 HOH HOH . J 5 HOH A 73 2213 153 HOH HOH . J 5 HOH A 74 2214 154 HOH HOH . J 5 HOH A 75 2215 156 HOH HOH . J 5 HOH A 76 2216 160 HOH HOH . J 5 HOH A 77 2217 166 HOH HOH . J 5 HOH A 78 2218 169 HOH HOH . J 5 HOH A 79 2219 170 HOH HOH . J 5 HOH A 80 2220 172 HOH HOH . J 5 HOH A 81 2221 177 HOH HOH . J 5 HOH A 82 2222 184 HOH HOH . J 5 HOH A 83 2223 189 HOH HOH . J 5 HOH A 84 2224 193 HOH HOH . J 5 HOH A 85 2225 194 HOH HOH . J 5 HOH A 86 2226 195 HOH HOH . J 5 HOH A 87 2227 208 HOH HOH . J 5 HOH A 88 2228 213 HOH HOH . J 5 HOH A 89 2229 219 HOH HOH . J 5 HOH A 90 2230 224 HOH HOH . J 5 HOH A 91 2231 225 HOH HOH . J 5 HOH A 92 2232 227 HOH HOH . K 5 HOH B 1 402 10 HOH HOH . K 5 HOH B 2 403 11 HOH HOH . K 5 HOH B 3 404 30 HOH HOH . K 5 HOH B 4 405 33 HOH HOH . K 5 HOH B 5 406 34 HOH HOH . K 5 HOH B 6 407 35 HOH HOH . K 5 HOH B 7 408 40 HOH HOH . K 5 HOH B 8 409 47 HOH HOH . K 5 HOH B 9 410 53 HOH HOH . K 5 HOH B 10 411 54 HOH HOH . K 5 HOH B 11 412 60 HOH HOH . K 5 HOH B 12 413 63 HOH HOH . K 5 HOH B 13 414 65 HOH HOH . K 5 HOH B 14 415 66 HOH HOH . K 5 HOH B 15 416 67 HOH HOH . K 5 HOH B 16 417 68 HOH HOH . K 5 HOH B 17 418 72 HOH HOH . K 5 HOH B 18 419 78 HOH HOH . K 5 HOH B 19 420 79 HOH HOH . K 5 HOH B 20 421 80 HOH HOH . K 5 HOH B 21 422 82 HOH HOH . K 5 HOH B 22 423 87 HOH HOH . K 5 HOH B 23 424 91 HOH HOH . K 5 HOH B 24 425 92 HOH HOH . K 5 HOH B 25 426 94 HOH HOH . K 5 HOH B 26 427 99 HOH HOH . K 5 HOH B 27 428 114 HOH HOH . K 5 HOH B 28 429 115 HOH HOH . K 5 HOH B 29 430 119 HOH HOH . K 5 HOH B 30 431 121 HOH HOH . K 5 HOH B 31 432 126 HOH HOH . K 5 HOH B 32 433 138 HOH HOH . K 5 HOH B 33 434 139 HOH HOH . K 5 HOH B 34 435 147 HOH HOH . K 5 HOH B 35 436 155 HOH HOH . K 5 HOH B 36 437 161 HOH HOH . K 5 HOH B 37 438 174 HOH HOH . K 5 HOH B 38 439 175 HOH HOH . K 5 HOH B 39 440 186 HOH HOH . K 5 HOH B 40 441 196 HOH HOH . K 5 HOH B 41 442 198 HOH HOH . K 5 HOH B 42 443 201 HOH HOH . K 5 HOH B 43 444 202 HOH HOH . K 5 HOH B 44 445 215 HOH HOH . K 5 HOH B 45 446 216 HOH HOH . K 5 HOH B 46 447 229 HOH HOH . K 5 HOH B 47 448 230 HOH HOH . L 5 HOH C 1 403 1 HOH HOH . L 5 HOH C 2 404 4 HOH HOH . L 5 HOH C 3 405 8 HOH HOH . L 5 HOH C 4 406 15 HOH HOH . L 5 HOH C 5 407 19 HOH HOH . L 5 HOH C 6 408 25 HOH HOH . L 5 HOH C 7 409 28 HOH HOH . L 5 HOH C 8 410 36 HOH HOH . L 5 HOH C 9 411 37 HOH HOH . L 5 HOH C 10 412 39 HOH HOH . L 5 HOH C 11 413 42 HOH HOH . L 5 HOH C 12 414 43 HOH HOH . L 5 HOH C 13 415 45 HOH HOH . L 5 HOH C 14 416 56 HOH HOH . L 5 HOH C 15 417 59 HOH HOH . L 5 HOH C 16 418 61 HOH HOH . L 5 HOH C 17 419 69 HOH HOH . L 5 HOH C 18 420 70 HOH HOH . L 5 HOH C 19 421 75 HOH HOH . L 5 HOH C 20 422 76 HOH HOH . L 5 HOH C 21 423 83 HOH HOH . L 5 HOH C 22 424 84 HOH HOH . L 5 HOH C 23 425 85 HOH HOH . L 5 HOH C 24 426 89 HOH HOH . L 5 HOH C 25 427 90 HOH HOH . L 5 HOH C 26 428 93 HOH HOH . L 5 HOH C 27 429 97 HOH HOH . L 5 HOH C 28 430 101 HOH HOH . L 5 HOH C 29 431 106 HOH HOH . L 5 HOH C 30 432 110 HOH HOH . L 5 HOH C 31 433 118 HOH HOH . L 5 HOH C 32 434 120 HOH HOH . L 5 HOH C 33 435 122 HOH HOH . L 5 HOH C 34 436 124 HOH HOH . L 5 HOH C 35 437 127 HOH HOH . L 5 HOH C 36 438 131 HOH HOH . L 5 HOH C 37 439 132 HOH HOH . L 5 HOH C 38 440 134 HOH HOH . L 5 HOH C 39 441 137 HOH HOH . L 5 HOH C 40 442 140 HOH HOH . L 5 HOH C 41 443 141 HOH HOH . L 5 HOH C 42 444 142 HOH HOH . L 5 HOH C 43 445 145 HOH HOH . L 5 HOH C 44 446 149 HOH HOH . L 5 HOH C 45 447 157 HOH HOH . L 5 HOH C 46 448 158 HOH HOH . L 5 HOH C 47 449 159 HOH HOH . L 5 HOH C 48 450 162 HOH HOH . L 5 HOH C 49 451 163 HOH HOH . L 5 HOH C 50 452 165 HOH HOH . L 5 HOH C 51 453 179 HOH HOH . L 5 HOH C 52 454 191 HOH HOH . L 5 HOH C 53 455 197 HOH HOH . L 5 HOH C 54 456 199 HOH HOH . L 5 HOH C 55 457 200 HOH HOH . L 5 HOH C 56 458 203 HOH HOH . L 5 HOH C 57 459 204 HOH HOH . L 5 HOH C 58 460 209 HOH HOH . L 5 HOH C 59 461 218 HOH HOH . L 5 HOH C 60 462 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . G 2 62.379 19.985 5.915 1 34.57 ? N SAH 301 B 1 HETATM 2 C CA SAH . . . G 2 61.201 19.387 6.61 1 35.67 ? CA SAH 301 B 1 HETATM 3 C CB SAH . . . G 2 59.874 19.92 6.015 1 36.09 ? CB SAH 301 B 1 HETATM 4 C CG SAH . . . G 2 59.623 19.573 4.541 1 38.7 ? CG SAH 301 B 1 HETATM 5 S SD SAH . . . G 2 57.927 20.007 3.959 1 41.23 ? SD SAH 301 B 1 HETATM 6 C C SAH . . . G 2 61.343 17.863 6.5 1 35.37 ? C SAH 301 B 1 HETATM 7 O O SAH . . . G 2 62.299 17.414 5.853 1 36.3 ? O SAH 301 B 1 HETATM 8 O OXT SAH . . . G 2 60.557 17.045 7.019 1 34.62 ? OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . G 2 58.33 21.57 3.108 1 45.13 ? C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . G 2 58.064 22.798 3.991 1 47.03 ? C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . G 2 58.328 24.004 3.294 1 49.76 ? O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . G 2 56.653 22.965 4.561 1 48.52 ? C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . G 2 56.661 22.906 5.985 1 44.73 ? O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . G 2 56.199 24.35 4.103 1 50.2 ? C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . G 2 55.442 24.988 5.099 1 49.57 ? O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . G 2 57.513 25.059 3.807 1 51.38 ? C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . G 2 57.597 26.059 2.729 1 53.42 ? N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . G 2 56.911 26.105 1.536 1 53.08 ? C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . G 2 57.364 27.146 0.803 1 53.13 ? N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . G 2 58.354 27.771 1.506 1 53.68 ? C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . G 2 59.142 28.903 1.251 1 53.41 ? C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . G 2 59.012 29.581 0.111 1 52.07 ? N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . G 2 60.086 29.307 2.203 1 53.88 ? N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . G 2 60.22 28.604 3.399 1 53.12 ? C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . G 2 59.425 27.492 3.647 1 52.27 ? N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . G 2 58.511 27.091 2.721 1 53.68 ? C4 SAH 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #