data_2H0E # _model_server_result.job_id D292eNRczUyNkELzk0arug _model_server_result.datetime_utc '2024-11-14 03:52:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 2H0E # _exptl.entry_id 2H0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H0E _cell.length_a 73.17 _cell.length_b 73.17 _cell.length_c 145.02 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3,4 B,D,F 2 1,5,6,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 146.34 0 3 'crystal symmetry operation' 7_465 y-1,x+1,-z+1/2 0 1 0 1 0 0 0 0 -1 -73.17 73.17 72.51 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 73.17 73.17 72.51 5 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 73.17 0 6 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 145.02 7 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 73.17 145.02 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 8 A MSE 8 1_555 A N GLY 9 A GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ILE 38 A ILE 38 1_555 A N MSE 39 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 39 A MSE 39 1_555 A N LYS 40 A LYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C LEU 60 A LEU 60 1_555 A N MSE 61 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 61 A MSE 61 1_555 A N SER 62 A SER 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C VAL 66 A VAL 66 1_555 A N MSE 67 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 67 A MSE 67 1_555 A N GLU 68 A GLU 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C MSE 8 B MSE 8 1_555 B N GLY 9 B GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B C ILE 38 B ILE 38 1_555 B N MSE 39 B MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 39 B MSE 39 1_555 B N LYS 40 B LYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C LEU 60 B LEU 60 1_555 B N MSE 61 B MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 B C MSE 61 B MSE 61 1_555 B N SER 62 B SER 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C VAL 66 B VAL 66 1_555 B N MSE 67 B MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 67 B MSE 67 1_555 B N GLU 68 B GLU 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 B C ASN 79 B ASN 79 1_555 B N MSE 80 B MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 B C MSE 80 B MSE 80 1_555 B N ASN 81 B ASN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2H0E _atom_sites.fract_transf_matrix[1][1] 0.01367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 200 200 GOL GOL . D 2 GOL B 1 201 201 GOL GOL . E 3 HOH A 1 203 203 HOH HOH . E 3 HOH A 2 205 205 HOH HOH . E 3 HOH A 3 206 206 HOH HOH . E 3 HOH A 4 208 208 HOH HOH . E 3 HOH A 5 212 212 HOH HOH . E 3 HOH A 6 214 214 HOH HOH . E 3 HOH A 7 215 215 HOH HOH . E 3 HOH A 8 216 216 HOH HOH . E 3 HOH A 9 217 217 HOH HOH . E 3 HOH A 10 218 218 HOH HOH . E 3 HOH A 11 221 221 HOH HOH . E 3 HOH A 12 222 222 HOH HOH . E 3 HOH A 13 224 224 HOH HOH . E 3 HOH A 14 227 227 HOH HOH . E 3 HOH A 15 228 228 HOH HOH . E 3 HOH A 16 233 233 HOH HOH . E 3 HOH A 17 241 241 HOH HOH . E 3 HOH A 18 242 242 HOH HOH . E 3 HOH A 19 245 245 HOH HOH . E 3 HOH A 20 246 246 HOH HOH . E 3 HOH A 21 248 248 HOH HOH . E 3 HOH A 22 249 249 HOH HOH . E 3 HOH A 23 251 251 HOH HOH . E 3 HOH A 24 252 252 HOH HOH . E 3 HOH A 25 253 253 HOH HOH . E 3 HOH A 26 254 254 HOH HOH . E 3 HOH A 27 256 256 HOH HOH . E 3 HOH A 28 259 259 HOH HOH . E 3 HOH A 29 262 262 HOH HOH . E 3 HOH A 30 264 264 HOH HOH . E 3 HOH A 31 265 265 HOH HOH . E 3 HOH A 32 266 266 HOH HOH . E 3 HOH A 33 267 267 HOH HOH . E 3 HOH A 34 268 268 HOH HOH . F 3 HOH B 1 204 204 HOH HOH . F 3 HOH B 2 207 207 HOH HOH . F 3 HOH B 3 209 209 HOH HOH . F 3 HOH B 4 210 210 HOH HOH . F 3 HOH B 5 211 211 HOH HOH . F 3 HOH B 6 213 213 HOH HOH . F 3 HOH B 7 219 219 HOH HOH . F 3 HOH B 8 220 220 HOH HOH . F 3 HOH B 9 223 223 HOH HOH . F 3 HOH B 10 225 225 HOH HOH . F 3 HOH B 11 226 226 HOH HOH . F 3 HOH B 12 231 231 HOH HOH . F 3 HOH B 13 232 232 HOH HOH . F 3 HOH B 14 234 234 HOH HOH . F 3 HOH B 15 236 236 HOH HOH . F 3 HOH B 16 237 237 HOH HOH . F 3 HOH B 17 238 238 HOH HOH . F 3 HOH B 18 239 239 HOH HOH . F 3 HOH B 19 240 240 HOH HOH . F 3 HOH B 20 243 243 HOH HOH . F 3 HOH B 21 247 247 HOH HOH . F 3 HOH B 22 250 250 HOH HOH . F 3 HOH B 23 255 255 HOH HOH . F 3 HOH B 24 257 257 HOH HOH . F 3 HOH B 25 258 258 HOH HOH . F 3 HOH B 26 260 260 HOH HOH . F 3 HOH B 27 261 261 HOH HOH . F 3 HOH B 28 263 263 HOH HOH . F 3 HOH B 29 269 269 HOH HOH . F 3 HOH B 30 270 270 HOH HOH . F 3 HOH B 31 271 271 HOH HOH . F 3 HOH B 32 272 272 HOH HOH . F 3 HOH B 33 273 273 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 12.626 34.536 74.577 0.5 50.51 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . D 2 13.935 34.21 74.107 0.5 49.92 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . D 2 12.326 36.005 74.282 0.5 50.98 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . D 2 10.941 36.267 74.526 0.5 51.7 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . D 2 13.179 36.895 75.188 0.5 50.44 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . D 2 12.932 38.268 74.88 0.5 51.07 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #