data_2H0J # _model_server_result.job_id 2i2FqMDQl5UnYMACxtg6FA _model_server_result.datetime_utc '2025-03-05 18:22:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":122}' # _entry.id 2H0J # _exptl.entry_id 2H0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H0J _cell.length_a 72.956 _cell.length_b 72.956 _cell.length_c 145.127 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1,2,3,4 B,E 2 1,5,6,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 145.912 0 3 'crystal symmetry operation' 7_465 y-1,x+1,-z+1/2 0 1 0 1 0 0 0 0 -1 -72.956 72.956 72.5635 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 72.956 72.956 72.5635 5 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 72.956 0 6 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 145.127 7 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 72.956 145.127 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 8 A MSE 8 1_555 A N GLY 9 A GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ILE 38 A ILE 38 1_555 A N MSE 39 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 39 A MSE 39 1_555 A N LYS 40 A LYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C LEU 60 A LEU 60 1_555 A N MSE 61 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 61 A MSE 61 1_555 A N SER 62 A SER 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C VAL 66 A VAL 66 1_555 A N MSE 67 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 67 A MSE 67 1_555 A N GLU 68 A GLU 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 B C MSE 8 B MSE 8 1_555 B N GLY 9 B GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C ILE 38 B ILE 38 1_555 B N MSE 39 B MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C MSE 39 B MSE 39 1_555 B N LYS 40 B LYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 B C LEU 60 B LEU 60 1_555 B N MSE 61 B MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 61 B MSE 61 1_555 B N SER 62 B SER 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C VAL 66 B VAL 66 1_555 B N MSE 67 B MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 B C MSE 67 B MSE 67 1_555 B N GLU 68 B GLU 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C ASN 79 B ASN 79 1_555 B N MSE 80 B MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 80 B MSE 80 1_555 B N ASN 81 B ASN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C4 H6 N4 O2' _chem_comp.formula_weight 142.116 _chem_comp.id URN _chem_comp.mon_nstd_flag . _chem_comp.name 5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5,6-DIAMINOURACIL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 URN doub 349 n n C4 N3 URN sing 350 n y C4 C5 URN sing 351 n y N3 C2 URN sing 352 n y N3 HN3 URN sing 353 n n C5 N5 URN sing 354 n n C5 C6 URN doub 355 n y N5 HN51 URN sing 356 n n N5 HN52 URN sing 357 n n C6 N6 URN sing 358 n n C6 N1 URN sing 359 n y N6 HN61 URN sing 360 n n N6 HN62 URN sing 361 n n N1 C2 URN sing 362 n y N1 HN1 URN sing 363 n n C2 O2 URN doub 364 n n # _atom_sites.entry_id 2H0J _atom_sites.fract_transf_matrix[1][1] 0.01371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 URN A 1 122 1 URN DAU . D 3 HOH A 1 301 301 HOH HOH . D 3 HOH A 2 305 305 HOH HOH . D 3 HOH A 3 308 308 HOH HOH . D 3 HOH A 4 309 309 HOH HOH . D 3 HOH A 5 310 310 HOH HOH . D 3 HOH A 6 311 311 HOH HOH . D 3 HOH A 7 314 314 HOH HOH . D 3 HOH A 8 317 317 HOH HOH . D 3 HOH A 9 318 318 HOH HOH . D 3 HOH A 10 319 319 HOH HOH . D 3 HOH A 11 321 321 HOH HOH . D 3 HOH A 12 322 322 HOH HOH . D 3 HOH A 13 324 324 HOH HOH . D 3 HOH A 14 327 327 HOH HOH . D 3 HOH A 15 330 330 HOH HOH . D 3 HOH A 16 332 332 HOH HOH . D 3 HOH A 17 333 333 HOH HOH . D 3 HOH A 18 334 334 HOH HOH . D 3 HOH A 19 339 339 HOH HOH . D 3 HOH A 20 340 340 HOH HOH . D 3 HOH A 21 342 342 HOH HOH . D 3 HOH A 22 343 343 HOH HOH . D 3 HOH A 23 344 344 HOH HOH . D 3 HOH A 24 345 345 HOH HOH . D 3 HOH A 25 348 348 HOH HOH . D 3 HOH A 26 349 349 HOH HOH . D 3 HOH A 27 350 350 HOH HOH . D 3 HOH A 28 352 352 HOH HOH . D 3 HOH A 29 354 354 HOH HOH . E 3 HOH B 1 300 300 HOH HOH . E 3 HOH B 2 302 302 HOH HOH . E 3 HOH B 3 303 303 HOH HOH . E 3 HOH B 4 304 304 HOH HOH . E 3 HOH B 5 306 306 HOH HOH . E 3 HOH B 6 307 307 HOH HOH . E 3 HOH B 7 312 312 HOH HOH . E 3 HOH B 8 313 313 HOH HOH . E 3 HOH B 9 315 315 HOH HOH . E 3 HOH B 10 316 316 HOH HOH . E 3 HOH B 11 320 320 HOH HOH . E 3 HOH B 12 323 323 HOH HOH . E 3 HOH B 13 325 325 HOH HOH . E 3 HOH B 14 326 326 HOH HOH . E 3 HOH B 15 328 328 HOH HOH . E 3 HOH B 16 329 329 HOH HOH . E 3 HOH B 17 331 331 HOH HOH . E 3 HOH B 18 335 335 HOH HOH . E 3 HOH B 19 336 336 HOH HOH . E 3 HOH B 20 337 337 HOH HOH . E 3 HOH B 21 338 338 HOH HOH . E 3 HOH B 22 341 341 HOH HOH . E 3 HOH B 23 346 346 HOH HOH . E 3 HOH B 24 347 347 HOH HOH . E 3 HOH B 25 351 351 HOH HOH . E 3 HOH B 26 353 353 HOH HOH . E 3 HOH B 27 355 355 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 URN . . . C 2 -8.788 63.496 38.018 0.5 50.79 ? O4 URN 122 A 1 HETATM 2 C C4 URN . . . C 2 -9.559 62.909 37.278 0.5 50.1 ? C4 URN 122 A 1 HETATM 3 N N3 URN . . . C 2 -10.193 61.717 37.667 0.5 49.93 ? N3 URN 122 A 1 HETATM 4 C C5 URN . . . C 2 -9.766 63.564 35.936 0.5 49.73 ? C5 URN 122 A 1 HETATM 5 N N5 URN . . . C 2 -9.126 64.763 35.556 0.5 49.28 ? N5 URN 122 A 1 HETATM 6 C C6 URN . . . C 2 -10.728 62.812 35.033 0.5 49.63 ? C6 URN 122 A 1 HETATM 7 N N6 URN . . . C 2 -11.019 63.273 33.787 0.5 49.57 ? N6 URN 122 A 1 HETATM 8 N N1 URN . . . C 2 -11.311 61.64 35.498 0.5 49.22 ? N1 URN 122 A 1 HETATM 9 C C2 URN . . . C 2 -11.08 61.081 36.759 0.5 49.61 ? C2 URN 122 A 1 HETATM 10 O O2 URN . . . C 2 -11.704 60.011 37.006 0.5 50.55 ? O2 URN 122 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 103 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #