data_2H1F
#
_model_server_result.job_id            1vToKCv4YnSCy431XTiPZw 
_model_server_result.datetime_utc      '2025-04-10 01:13:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2h1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    2H1F 
#
_exptl.entry_id    2H1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2H1F 
_cell.length_a            78.86 
_cell.length_b            88.86 
_cell.length_c            89.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2H1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2H1F 
_atom_sites.fract_transf_matrix[1][1]    0.012681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011136 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 400 400 ADP ADP . 
D 2 ADP B 1 401 401 ADP ADP . 
E 3 HOH A 1 401 1 HOH WAT . 
E 3 HOH A 2 402 2 HOH WAT . 
E 3 HOH A 3 403 4 HOH WAT . 
E 3 HOH A 4 404 6 HOH WAT . 
E 3 HOH A 5 405 8 HOH WAT . 
E 3 HOH A 6 406 10 HOH WAT . 
E 3 HOH A 7 407 11 HOH WAT . 
E 3 HOH A 8 408 12 HOH WAT . 
E 3 HOH A 9 409 13 HOH WAT . 
E 3 HOH A 10 410 14 HOH WAT . 
E 3 HOH A 11 411 16 HOH WAT . 
E 3 HOH A 12 412 18 HOH WAT . 
E 3 HOH A 13 413 19 HOH WAT . 
E 3 HOH A 14 414 20 HOH WAT . 
E 3 HOH A 15 415 23 HOH WAT . 
E 3 HOH A 16 416 24 HOH WAT . 
E 3 HOH A 17 417 25 HOH WAT . 
E 3 HOH A 18 418 26 HOH WAT . 
E 3 HOH A 19 419 29 HOH WAT . 
E 3 HOH A 20 420 30 HOH WAT . 
E 3 HOH A 21 421 31 HOH WAT . 
E 3 HOH A 22 422 35 HOH WAT . 
E 3 HOH A 23 423 36 HOH WAT . 
E 3 HOH A 24 424 37 HOH WAT . 
E 3 HOH A 25 425 39 HOH WAT . 
E 3 HOH A 26 426 44 HOH WAT . 
E 3 HOH A 27 427 46 HOH WAT . 
E 3 HOH A 28 428 47 HOH WAT . 
E 3 HOH A 29 429 48 HOH WAT . 
E 3 HOH A 30 430 50 HOH WAT . 
E 3 HOH A 31 431 52 HOH WAT . 
E 3 HOH A 32 432 53 HOH WAT . 
E 3 HOH A 33 433 55 HOH WAT . 
E 3 HOH A 34 434 56 HOH WAT . 
E 3 HOH A 35 435 57 HOH WAT . 
E 3 HOH A 36 436 58 HOH WAT . 
E 3 HOH A 37 437 59 HOH WAT . 
E 3 HOH A 38 438 60 HOH WAT . 
E 3 HOH A 39 439 61 HOH WAT . 
E 3 HOH A 40 440 62 HOH WAT . 
E 3 HOH A 41 441 69 HOH WAT . 
E 3 HOH A 42 442 70 HOH WAT . 
F 3 HOH B 1 402 3 HOH WAT . 
F 3 HOH B 2 403 5 HOH WAT . 
F 3 HOH B 3 404 7 HOH WAT . 
F 3 HOH B 4 405 9 HOH WAT . 
F 3 HOH B 5 406 15 HOH WAT . 
F 3 HOH B 6 407 17 HOH WAT . 
F 3 HOH B 7 408 21 HOH WAT . 
F 3 HOH B 8 409 22 HOH WAT . 
F 3 HOH B 9 410 27 HOH WAT . 
F 3 HOH B 10 411 28 HOH WAT . 
F 3 HOH B 11 412 32 HOH WAT . 
F 3 HOH B 12 413 33 HOH WAT . 
F 3 HOH B 13 414 34 HOH WAT . 
F 3 HOH B 14 415 38 HOH WAT . 
F 3 HOH B 15 416 40 HOH WAT . 
F 3 HOH B 16 417 41 HOH WAT . 
F 3 HOH B 17 418 42 HOH WAT . 
F 3 HOH B 18 419 43 HOH WAT . 
F 3 HOH B 19 420 45 HOH WAT . 
F 3 HOH B 20 421 49 HOH WAT . 
F 3 HOH B 21 422 51 HOH WAT . 
F 3 HOH B 22 423 54 HOH WAT . 
F 3 HOH B 23 424 63 HOH WAT . 
F 3 HOH B 24 425 64 HOH WAT . 
F 3 HOH B 25 426 65 HOH WAT . 
F 3 HOH B 26 427 66 HOH WAT . 
F 3 HOH B 27 428 67 HOH WAT . 
F 3 HOH B 28 429 68 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 2 37.42 32.492 46.203 0.8 65.76 ? PB ADP 401 B 1 
HETATM 2 O O1B ADP . . . D 2 38.409 31.45 45.825 0.8 67.14 ? O1B ADP 401 B 1 
HETATM 3 O O2B ADP . . . D 2 37.823 33.42 47.449 0.8 66.99 ? O2B ADP 401 B 1 
HETATM 4 O O3B ADP . . . D 2 37.158 33.346 45.038 0.8 67.99 ? O3B ADP 401 B 1 
HETATM 5 P PA ADP . . . D 2 34.661 32.31 47.117 0.8 68.24 ? PA ADP 401 B 1 
HETATM 6 O O1A ADP . . . D 2 34.706 32.278 48.568 0.8 70.53 ? O1A ADP 401 B 1 
HETATM 7 O O2A ADP . . . D 2 34.236 33.64 46.67 0.8 68.51 ? O2A ADP 401 B 1 
HETATM 8 O O3A ADP . . . D 2 36.082 31.852 46.62 0.8 67.4 ? O3A ADP 401 B 1 
HETATM 9 O O5' ADP . . . D 2 33.729 31.133 46.62 0.8 67.99 ? O5' ADP 401 B 1 
HETATM 10 C C5' ADP . . . D 2 33.857 29.679 46.84 0.8 63.91 ? C5' ADP 401 B 1 
HETATM 11 C C4' ADP . . . D 2 34.326 29.415 48.257 0.8 60.22 ? C4' ADP 401 B 1 
HETATM 12 O O4' ADP . . . D 2 33.512 29.961 49.325 0.8 59.38 ? O4' ADP 401 B 1 
HETATM 13 C C3' ADP . . . D 2 34.412 27.94 48.439 0.8 59.42 ? C3' ADP 401 B 1 
HETATM 14 O O3' ADP . . . D 2 35.641 27.481 49.01 0.8 59.01 ? O3' ADP 401 B 1 
HETATM 15 C C2' ADP . . . D 2 33.165 27.669 49.231 0.8 59.06 ? C2' ADP 401 B 1 
HETATM 16 O O2' ADP . . . D 2 33.1 26.417 49.931 0.8 59.6 ? O2' ADP 401 B 1 
HETATM 17 C C1' ADP . . . D 2 33.102 28.862 50.141 0.8 58.27 ? C1' ADP 401 B 1 
HETATM 18 N N9 ADP . . . D 2 31.707 28.944 50.7 0.8 57.17 ? N9 ADP 401 B 1 
HETATM 19 C C8 ADP . . . D 2 30.611 29.448 50.106 0.8 56.86 ? C8 ADP 401 B 1 
HETATM 20 N N7 ADP . . . D 2 29.574 29.356 50.927 0.8 57.35 ? N7 ADP 401 B 1 
HETATM 21 C C5 ADP . . . D 2 29.977 28.806 52.053 0.8 56.9 ? C5 ADP 401 B 1 
HETATM 22 C C6 ADP . . . D 2 29.369 28.45 53.273 0.8 55.93 ? C6 ADP 401 B 1 
HETATM 23 N N6 ADP . . . D 2 28.069 28.704 53.426 0.8 56.46 ? N6 ADP 401 B 1 
HETATM 24 N N1 ADP . . . D 2 30.103 27.862 54.294 0.8 55.49 ? N1 ADP 401 B 1 
HETATM 25 C C2 ADP . . . D 2 31.426 27.608 54.139 0.8 54.96 ? C2 ADP 401 B 1 
HETATM 26 N N3 ADP . . . D 2 32.025 27.946 52.957 0.8 56.02 ? N3 ADP 401 B 1 
HETATM 27 C C4 ADP . . . D 2 31.365 28.532 51.911 0.8 56.86 ? C4 ADP 401 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#