data_2H3D
#
_model_server_result.job_id            6jIANG-nHWoXbqX4p6YE3w 
_model_server_result.datetime_utc      '2024-11-26 17:03:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2h3d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3819}' 
#
_entry.id    2H3D 
#
_exptl.entry_id    2H3D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.227 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.98 
_cell.angle_gamma         90 
_cell.entry_id            2H3D 
_cell.length_a            60.46 
_cell.length_b            107.96 
_cell.length_c            83.65 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2H3D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 370 A GLY 367 1_555 A N MSE 371 A MSE 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 371 A MSE 368 1_555 A N LYS 372 A LYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C GLY 370 B GLY 367 1_555 B N MSE 371 B MSE 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C MSE 371 B MSE 368 1_555 B N LYS 372 B LYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C11 H16 N2 O8 P 1' 
_chem_comp.formula_weight    335.227 
_chem_comp.id                NMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'NICOTINAMIDE MONONUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P NMN doub 256 n n 
P O1P NMN sing 257 n n 
P O2P NMN sing 258 n n 
P O5R NMN sing 259 n n 
O1P H1PO NMN sing 260 n n 
O2P H2PO NMN sing 261 n n 
O5R C5R NMN sing 262 n n 
C5R C4R NMN sing 263 n n 
C5R H5R1 NMN sing 264 n n 
C5R H5R2 NMN sing 265 n n 
C4R O4R NMN sing 266 n n 
C4R C3R NMN sing 267 n n 
C4R H4RC NMN sing 268 n n 
O4R C1R NMN sing 269 n n 
C3R O3R NMN sing 270 n n 
C3R C2R NMN sing 271 n n 
C3R H3RC NMN sing 272 n n 
O3R H3RO NMN sing 273 n n 
C2R O2R NMN sing 274 n n 
C2R C1R NMN sing 275 n n 
C2R H2RC NMN sing 276 n n 
O2R H2RO NMN sing 277 n n 
C1R N1 NMN sing 278 n n 
C1R H1RC NMN sing 279 n n 
N1 C2 NMN doub 280 n y 
N1 C6 NMN sing 281 n y 
C2 C3 NMN sing 282 n y 
C2 HC2 NMN sing 283 n n 
C3 C7 NMN sing 284 n n 
C3 C4 NMN doub 285 n y 
C7 O7 NMN doub 286 n n 
C7 N7 NMN sing 287 n n 
N7 HN71 NMN sing 288 n n 
N7 HN72 NMN sing 289 n n 
C4 C5 NMN sing 290 n y 
C4 HC4 NMN sing 291 n n 
C5 C6 NMN doub 292 n y 
C5 HC5 NMN sing 293 n n 
C6 HC6 NMN sing 294 n n 
#
_atom_sites.entry_id                     2H3D 
_atom_sites.fract_transf_matrix[1][1]    0.01654 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002025 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NMN A 1 3819 3819 NMN NMN . 
D 2 NMN B 1 4819 4819 NMN NMN . 
E 3 HOH A 1 3820 1 HOH WAT . 
E 3 HOH A 2 3821 4 HOH WAT . 
E 3 HOH A 3 3822 5 HOH WAT . 
E 3 HOH A 4 3823 6 HOH WAT . 
E 3 HOH A 5 3824 7 HOH WAT . 
E 3 HOH A 6 3825 10 HOH WAT . 
E 3 HOH A 7 3826 11 HOH WAT . 
E 3 HOH A 8 3827 12 HOH WAT . 
E 3 HOH A 9 3828 13 HOH WAT . 
E 3 HOH A 10 3829 14 HOH WAT . 
E 3 HOH A 11 3830 23 HOH WAT . 
E 3 HOH A 12 3831 24 HOH WAT . 
E 3 HOH A 13 3832 26 HOH WAT . 
E 3 HOH A 14 3833 27 HOH WAT . 
E 3 HOH A 15 3834 28 HOH WAT . 
E 3 HOH A 16 3835 29 HOH WAT . 
E 3 HOH A 17 3836 31 HOH WAT . 
E 3 HOH A 18 3837 37 HOH WAT . 
E 3 HOH A 19 3838 40 HOH WAT . 
E 3 HOH A 20 3839 41 HOH WAT . 
E 3 HOH A 21 3840 43 HOH WAT . 
E 3 HOH A 22 3841 44 HOH WAT . 
E 3 HOH A 23 3842 45 HOH WAT . 
E 3 HOH A 24 3843 46 HOH WAT . 
E 3 HOH A 25 3844 49 HOH WAT . 
E 3 HOH A 26 3845 50 HOH WAT . 
E 3 HOH A 27 3846 51 HOH WAT . 
E 3 HOH A 28 3847 52 HOH WAT . 
E 3 HOH A 29 3848 60 HOH WAT . 
E 3 HOH A 30 3849 61 HOH WAT . 
E 3 HOH A 31 3850 64 HOH WAT . 
E 3 HOH A 32 3851 65 HOH WAT . 
E 3 HOH A 33 3852 66 HOH WAT . 
E 3 HOH A 34 3853 67 HOH WAT . 
E 3 HOH A 35 3854 71 HOH WAT . 
E 3 HOH A 36 3855 72 HOH WAT . 
E 3 HOH A 37 3856 74 HOH WAT . 
E 3 HOH A 38 3857 75 HOH WAT . 
E 3 HOH A 39 3858 78 HOH WAT . 
E 3 HOH A 40 3859 79 HOH WAT . 
E 3 HOH A 41 3860 82 HOH WAT . 
E 3 HOH A 42 3861 84 HOH WAT . 
E 3 HOH A 43 3862 90 HOH WAT . 
E 3 HOH A 44 3863 92 HOH WAT . 
E 3 HOH A 45 3864 93 HOH WAT . 
E 3 HOH A 46 3865 95 HOH WAT . 
E 3 HOH A 47 3866 100 HOH WAT . 
E 3 HOH A 48 3867 102 HOH WAT . 
E 3 HOH A 49 3868 105 HOH WAT . 
E 3 HOH A 50 3869 109 HOH WAT . 
E 3 HOH A 51 3870 114 HOH WAT . 
E 3 HOH A 52 3871 115 HOH WAT . 
E 3 HOH A 53 3872 117 HOH WAT . 
E 3 HOH A 54 3873 118 HOH WAT . 
E 3 HOH A 55 3874 119 HOH WAT . 
E 3 HOH A 56 3875 120 HOH WAT . 
E 3 HOH A 57 3876 122 HOH WAT . 
E 3 HOH A 58 3877 123 HOH WAT . 
E 3 HOH A 59 3878 124 HOH WAT . 
E 3 HOH A 60 3879 129 HOH WAT . 
E 3 HOH A 61 3880 133 HOH WAT . 
E 3 HOH A 62 3881 136 HOH WAT . 
E 3 HOH A 63 3882 140 HOH WAT . 
E 3 HOH A 64 3883 144 HOH WAT . 
E 3 HOH A 65 3884 145 HOH WAT . 
E 3 HOH A 66 3885 147 HOH WAT . 
E 3 HOH A 67 3886 148 HOH WAT . 
E 3 HOH A 68 3887 150 HOH WAT . 
E 3 HOH A 69 3888 153 HOH WAT . 
E 3 HOH A 70 3889 156 HOH WAT . 
E 3 HOH A 71 3890 159 HOH WAT . 
E 3 HOH A 72 3891 161 HOH WAT . 
E 3 HOH A 73 3892 162 HOH WAT . 
E 3 HOH A 74 3893 166 HOH WAT . 
E 3 HOH A 75 3894 169 HOH WAT . 
E 3 HOH A 76 3895 171 HOH WAT . 
E 3 HOH A 77 3896 174 HOH WAT . 
E 3 HOH A 78 3897 176 HOH WAT . 
E 3 HOH A 79 3898 179 HOH WAT . 
E 3 HOH A 80 3899 185 HOH WAT . 
E 3 HOH A 81 3900 199 HOH WAT . 
E 3 HOH A 82 3901 203 HOH WAT . 
F 3 HOH B 1 4820 2 HOH WAT . 
F 3 HOH B 2 4821 3 HOH WAT . 
F 3 HOH B 3 4822 8 HOH WAT . 
F 3 HOH B 4 4823 9 HOH WAT . 
F 3 HOH B 5 4824 15 HOH WAT . 
F 3 HOH B 6 4825 16 HOH WAT . 
F 3 HOH B 7 4826 17 HOH WAT . 
F 3 HOH B 8 4827 18 HOH WAT . 
F 3 HOH B 9 4828 19 HOH WAT . 
F 3 HOH B 10 4829 20 HOH WAT . 
F 3 HOH B 11 4830 21 HOH WAT . 
F 3 HOH B 12 4831 22 HOH WAT . 
F 3 HOH B 13 4832 25 HOH WAT . 
F 3 HOH B 14 4833 30 HOH WAT . 
F 3 HOH B 15 4834 32 HOH WAT . 
F 3 HOH B 16 4835 33 HOH WAT . 
F 3 HOH B 17 4836 34 HOH WAT . 
F 3 HOH B 18 4837 35 HOH WAT . 
F 3 HOH B 19 4838 36 HOH WAT . 
F 3 HOH B 20 4839 38 HOH WAT . 
F 3 HOH B 21 4840 39 HOH WAT . 
F 3 HOH B 22 4841 42 HOH WAT . 
F 3 HOH B 23 4842 47 HOH WAT . 
F 3 HOH B 24 4843 48 HOH WAT . 
F 3 HOH B 25 4844 53 HOH WAT . 
F 3 HOH B 26 4845 54 HOH WAT . 
F 3 HOH B 27 4846 55 HOH WAT . 
F 3 HOH B 28 4847 56 HOH WAT . 
F 3 HOH B 29 4848 58 HOH WAT . 
F 3 HOH B 30 4849 59 HOH WAT . 
F 3 HOH B 31 4850 63 HOH WAT . 
F 3 HOH B 32 4851 69 HOH WAT . 
F 3 HOH B 33 4852 73 HOH WAT . 
F 3 HOH B 34 4853 76 HOH WAT . 
F 3 HOH B 35 4854 77 HOH WAT . 
F 3 HOH B 36 4855 81 HOH WAT . 
F 3 HOH B 37 4856 83 HOH WAT . 
F 3 HOH B 38 4857 85 HOH WAT . 
F 3 HOH B 39 4858 86 HOH WAT . 
F 3 HOH B 40 4859 87 HOH WAT . 
F 3 HOH B 41 4860 88 HOH WAT . 
F 3 HOH B 42 4861 94 HOH WAT . 
F 3 HOH B 43 4862 96 HOH WAT . 
F 3 HOH B 44 4863 99 HOH WAT . 
F 3 HOH B 45 4864 101 HOH WAT . 
F 3 HOH B 46 4865 103 HOH WAT . 
F 3 HOH B 47 4866 104 HOH WAT . 
F 3 HOH B 48 4867 106 HOH WAT . 
F 3 HOH B 49 4868 107 HOH WAT . 
F 3 HOH B 50 4869 108 HOH WAT . 
F 3 HOH B 51 4870 111 HOH WAT . 
F 3 HOH B 52 4871 112 HOH WAT . 
F 3 HOH B 53 4872 113 HOH WAT . 
F 3 HOH B 54 4873 116 HOH WAT . 
F 3 HOH B 55 4874 125 HOH WAT . 
F 3 HOH B 56 4875 126 HOH WAT . 
F 3 HOH B 57 4876 127 HOH WAT . 
F 3 HOH B 58 4877 128 HOH WAT . 
F 3 HOH B 59 4878 132 HOH WAT . 
F 3 HOH B 60 4879 134 HOH WAT . 
F 3 HOH B 61 4880 137 HOH WAT . 
F 3 HOH B 62 4881 138 HOH WAT . 
F 3 HOH B 63 4882 139 HOH WAT . 
F 3 HOH B 64 4883 141 HOH WAT . 
F 3 HOH B 65 4884 143 HOH WAT . 
F 3 HOH B 66 4885 146 HOH WAT . 
F 3 HOH B 67 4886 149 HOH WAT . 
F 3 HOH B 68 4887 151 HOH WAT . 
F 3 HOH B 69 4888 152 HOH WAT . 
F 3 HOH B 70 4889 160 HOH WAT . 
F 3 HOH B 71 4890 163 HOH WAT . 
F 3 HOH B 72 4891 164 HOH WAT . 
F 3 HOH B 73 4892 172 HOH WAT . 
F 3 HOH B 74 4893 177 HOH WAT . 
F 3 HOH B 75 4894 184 HOH WAT . 
F 3 HOH B 76 4895 189 HOH WAT . 
F 3 HOH B 77 4896 191 HOH WAT . 
F 3 HOH B 78 4897 192 HOH WAT . 
F 3 HOH B 79 4898 200 HOH WAT . 
F 3 HOH B 80 4899 202 HOH WAT . 
F 3 HOH B 81 4900 204 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P NMN . . . C 2 18.881 -8.895 8.601 1 43.13 ? O3P NMN 3819 A 1 
HETATM 2 P P NMN . . . C 2 18.8 -9.615 9.997 1 39.22 ? P NMN 3819 A 1 
HETATM 3 O O1P NMN . . . C 2 17.822 -8.942 10.857 1 40.71 ? O1P NMN 3819 A 1 
HETATM 4 O O2P NMN . . . C 2 20.194 -9.632 10.506 1 43.72 ? O2P NMN 3819 A 1 
HETATM 5 O O5R NMN . . . C 2 18.257 -11.071 9.659 1 42.23 ? O5R NMN 3819 A 1 
HETATM 6 C C5R NMN . . . C 2 17.145 -11.27 8.706 1 37.76 ? C5R NMN 3819 A 1 
HETATM 7 C C4R NMN . . . C 2 17.541 -12.326 7.682 1 37.06 ? C4R NMN 3819 A 1 
HETATM 8 O O4R NMN . . . C 2 16.421 -12.591 6.796 1 36.87 ? O4R NMN 3819 A 1 
HETATM 9 C C3R NMN . . . C 2 18.73 -11.94 6.721 1 36.78 ? C3R NMN 3819 A 1 
HETATM 10 O O3R NMN . . . C 2 19.622 -13.061 6.534 1 37.14 ? O3R NMN 3819 A 1 
HETATM 11 C C2R NMN . . . C 2 18.036 -11.51 5.465 1 35.45 ? C2R NMN 3819 A 1 
HETATM 12 O O2R NMN . . . C 2 18.844 -11.59 4.287 1 35.34 ? O2R NMN 3819 A 1 
HETATM 13 C C1R NMN . . . C 2 16.845 -12.386 5.414 1 33.91 ? C1R NMN 3819 A 1 
HETATM 14 N N1 NMN . . . C 2 15.704 -11.795 4.641 1 30.54 ? N1 NMN 3819 A 1 
HETATM 15 C C2 NMN . . . C 2 15.738 -11.875 3.228 1 29.42 ? C2 NMN 3819 A 1 
HETATM 16 C C3 NMN . . . C 2 14.697 -11.334 2.488 1 29.19 ? C3 NMN 3819 A 1 
HETATM 17 C C7 NMN . . . C 2 14.782 -11.448 0.953 1 29.17 ? C7 NMN 3819 A 1 
HETATM 18 O O7 NMN . . . C 2 15.766 -12.003 0.511 1 27.71 ? O7 NMN 3819 A 1 
HETATM 19 N N7 NMN . . . C 2 13.844 -10.965 0.178 1 26.43 ? N7 NMN 3819 A 1 
HETATM 20 C C4 NMN . . . C 2 13.538 -10.674 3.161 1 31.09 ? C4 NMN 3819 A 1 
HETATM 21 C C5 NMN . . . C 2 13.526 -10.605 4.612 1 29.07 ? C5 NMN 3819 A 1 
HETATM 22 C C6 NMN . . . C 2 14.604 -11.163 5.38 1 30.73 ? C6 NMN 3819 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#