data_2H3Z # _model_server_result.job_id 3dDRlBx5VL5zmtkg0aqpEg _model_server_result.datetime_utc '2024-12-29 01:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2H3Z # _exptl.entry_id 2H3Z _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 634.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H3Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H33 O19 P3' _chem_comp.formula_weight 634.354 _chem_comp.id PBU _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1 ,2-DIYL DIBUTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'di-butanoyl L-alpha-phosphatidyl-D-myo-inositol 4,5-bisphosphate;di-C4-PIP2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 PBU sing 216 n n P1 OP1 PBU sing 217 n n P1 OP2 PBU doub 218 n n P1 OP3 PBU sing 219 n n P4 O4 PBU sing 220 n n P4 O41 PBU doub 221 n n P4 O42 PBU sing 222 n n P4 O43 PBU sing 223 n n P5 O5 PBU sing 224 n n P5 O51 PBU doub 225 n n P5 O52 PBU sing 226 n n P5 O53 PBU sing 227 n n C3' C2' PBU sing 228 n n C3' OP1 PBU sing 229 n n C3' "H3'1" PBU sing 230 n n C3' "H3'2" PBU sing 231 n n C2' O2' PBU sing 232 n n C2' C1' PBU sing 233 n n C2' H2' PBU sing 234 n n O2' C7 PBU sing 235 n n C1' O1' PBU sing 236 n n C1' "H1'1" PBU sing 237 n n C1' "H1'2" PBU sing 238 n n O1' C11 PBU sing 239 n n C1 O1 PBU sing 240 n n C1 C2 PBU sing 241 n n C1 C6 PBU sing 242 n n C1 H1 PBU sing 243 n n C2 O2 PBU sing 244 n n C2 C3 PBU sing 245 n n C2 H2 PBU sing 246 n n O2 H02 PBU sing 247 n n C3 O3 PBU sing 248 n n C3 C4 PBU sing 249 n n C3 H3 PBU sing 250 n n O3 H03 PBU sing 251 n n C4 O4 PBU sing 252 n n C4 C5 PBU sing 253 n n C4 H4 PBU sing 254 n n C5 O5 PBU sing 255 n n C5 C6 PBU sing 256 n n C5 H5 PBU sing 257 n n C6 O6 PBU sing 258 n n C6 H6 PBU sing 259 n n O6 H06 PBU sing 260 n n C7 O7 PBU doub 261 n n C7 C8 PBU sing 262 n n C8 C9 PBU sing 263 n n C8 H81 PBU sing 264 n n C8 H82 PBU sing 265 n n C9 C10 PBU sing 266 n n C9 H91 PBU sing 267 n n C9 H92 PBU sing 268 n n C10 H11 PBU sing 269 n n C10 H12 PBU sing 270 n n C10 H13 PBU sing 271 n n C11 O11 PBU doub 272 n n C11 C12 PBU sing 273 n n C12 C13 PBU sing 274 n n C12 H121 PBU sing 275 n n C12 H122 PBU sing 276 n n C13 C14 PBU sing 277 n n C13 H131 PBU sing 278 n n C13 H132 PBU sing 279 n n C14 H141 PBU sing 280 n n C14 H142 PBU sing 281 n n C14 H143 PBU sing 282 n n O42 H42 PBU sing 283 n n O43 H43 PBU sing 284 n n O52 H52 PBU sing 285 n n O53 H53 PBU sing 286 n n OP3 HP3 PBU sing 287 n n # _atom_sites.entry_id 2H3Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PBU _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id PBU _pdbx_nonpoly_scheme.auth_mon_id PBU _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 PBU . . . B 2 -16.481 18.381 10.015 1 31.52 ? P1 PBU 300 A 1 HETATM 2 P P4 PBU . . . B 2 -19.346 25.715 6.178 1 33.31 ? P4 PBU 300 A 1 HETATM 3 P P5 PBU . . . B 2 -20.199 21.516 4.291 1 71.54 ? P5 PBU 300 A 1 HETATM 4 C C3' PBU . . . B 2 -17.095 16.437 8.55 1 13.1 ? C3' PBU 300 A 1 HETATM 5 C C2' PBU . . . B 2 -15.837 16.472 7.648 1 21.2 ? C2' PBU 300 A 1 HETATM 6 O O2' PBU . . . B 2 -16.173 15.927 6.383 1 14.1 ? O2' PBU 300 A 1 HETATM 7 C C1' PBU . . . B 2 -14.668 15.656 8.253 1 51.33 ? C1' PBU 300 A 1 HETATM 8 O O1' PBU . . . B 2 -15.168 14.441 8.771 1 32.1 ? O1' PBU 300 A 1 HETATM 9 C C1 PBU . . . B 2 -17.386 20.589 8.31 1 1.34 ? C1 PBU 300 A 1 HETATM 10 O O1 PBU . . . B 2 -17.525 19.246 9.039 1 72.45 ? O1 PBU 300 A 1 HETATM 11 C C2 PBU . . . B 2 -17.209 21.84 9.237 1 44.1 ? C2 PBU 300 A 1 HETATM 12 O O2 PBU . . . B 2 -18.255 21.98 10.194 1 63.44 ? O2 PBU 300 A 1 HETATM 13 C C3 PBU . . . B 2 -17.121 23.133 8.394 1 33.51 ? C3 PBU 300 A 1 HETATM 14 O O3 PBU . . . B 2 -16.967 24.236 9.298 1 25.23 ? O3 PBU 300 A 1 HETATM 15 C C4 PBU . . . B 2 -18.388 23.301 7.469 1 33.24 ? C4 PBU 300 A 1 HETATM 16 O O4 PBU . . . B 2 -18.236 24.555 6.626 1 33.31 ? O4 PBU 300 A 1 HETATM 17 C C5 PBU . . . B 2 -18.521 22.02 6.552 1 4.35 ? C5 PBU 300 A 1 HETATM 18 O O5 PBU . . . B 2 -19.731 22.15 5.739 1 53.33 ? O5 PBU 300 A 1 HETATM 19 C C6 PBU . . . B 2 -18.601 20.708 7.372 1 14.11 ? C6 PBU 300 A 1 HETATM 20 O O6 PBU . . . B 2 -18.604 19.542 6.535 1 23.25 ? O6 PBU 300 A 1 HETATM 21 C C7 PBU . . . B 2 -16.355 16.833 5.309 1 2.14 ? C7 PBU 300 A 1 HETATM 22 O O7 PBU . . . B 2 -17.369 16.806 4.648 1 60.12 ? O7 PBU 300 A 1 HETATM 23 C C8 PBU . . . B 2 -15.263 17.87 4.993 1 70.22 ? C8 PBU 300 A 1 HETATM 24 C C9 PBU . . . B 2 -15.409 18.372 3.544 1 73.22 ? C9 PBU 300 A 1 HETATM 25 C C10 PBU . . . B 2 -14.488 19.585 3.326 1 5.43 ? C10 PBU 300 A 1 HETATM 26 C C11 PBU . . . B 2 -14.36 13.557 9.513 1 23.24 ? C11 PBU 300 A 1 HETATM 27 O O11 PBU . . . B 2 -13.157 13.674 9.652 1 11.13 ? O11 PBU 300 A 1 HETATM 28 C C12 PBU . . . B 2 -15.098 12.335 10.128 1 72 ? C12 PBU 300 A 1 HETATM 29 C C13 PBU . . . B 2 -15.473 12.528 11.607 1 74.41 ? C13 PBU 300 A 1 HETATM 30 C C14 PBU . . . B 2 -14.263 12.279 12.524 1 44.31 ? C14 PBU 300 A 1 HETATM 31 O O41 PBU . . . B 2 -19.502 25.331 4.709 1 30.4 ? O41 PBU 300 A 1 HETATM 32 O O42 PBU . . . B 2 -20.563 25.456 7.025 1 42.3 ? O42 PBU 300 A 1 HETATM 33 O O43 PBU . . . B 2 -18.779 27.101 6.438 1 62.5 ? O43 PBU 300 A 1 HETATM 34 O O51 PBU . . . B 2 -20.792 22.746 3.633 1 22.21 ? O51 PBU 300 A 1 HETATM 35 O O52 PBU . . . B 2 -18.905 20.964 3.714 1 11.32 ? O52 PBU 300 A 1 HETATM 36 O O53 PBU . . . B 2 -21.217 20.47 4.684 1 24.13 ? O53 PBU 300 A 1 HETATM 37 O OP1 PBU . . . B 2 -16.82 16.929 9.845 1 44.01 ? OP1 PBU 300 A 1 HETATM 38 O OP2 PBU . . . B 2 -15.11 18.764 9.454 1 5.44 ? OP2 PBU 300 A 1 HETATM 39 O OP3 PBU . . . B 2 -16.805 18.835 11.414 1 21.03 ? OP3 PBU 300 A 1 HETATM 40 H "H3'1" PBU . . . B 2 -17.428 15.441 8.624 1 43.12 ? "H3'1" PBU 300 A 1 HETATM 41 H "H3'2" PBU . . . B 2 -17.836 17.031 8.088 1 10.04 ? "H3'2" PBU 300 A 1 HETATM 42 H H2' PBU . . . B 2 -15.497 17.465 7.565 1 4.13 ? H2' PBU 300 A 1 HETATM 43 H "H1'1" PBU . . . B 2 -13.972 15.409 7.498 1 20.03 ? "H1'1" PBU 300 A 1 HETATM 44 H "H1'2" PBU . . . B 2 -14.159 16.217 8.98 1 4.1 ? "H1'2" PBU 300 A 1 HETATM 45 H H1 PBU . . . B 2 -16.454 20.586 7.74 1 33.21 ? H1 PBU 300 A 1 HETATM 46 H H2 PBU . . . B 2 -16.27 21.699 9.774 1 64.02 ? H2 PBU 300 A 1 HETATM 47 H H02 PBU . . . B 2 -19.122 21.974 9.865 1 74.12 ? H02 PBU 300 A 1 HETATM 48 H H3 PBU . . . B 2 -16.254 23.088 7.733 1 50.35 ? H3 PBU 300 A 1 HETATM 49 H H03 PBU . . . B 2 -17.758 24.35 9.831 1 54.13 ? H03 PBU 300 A 1 HETATM 50 H H4 PBU . . . B 2 -19.31 23.4 8.028 1 33.44 ? H4 PBU 300 A 1 HETATM 51 H H5 PBU . . . B 2 -17.626 22.014 5.931 1 63.41 ? H5 PBU 300 A 1 HETATM 52 H H6 PBU . . . B 2 -19.523 20.722 7.937 1 34.21 ? H6 PBU 300 A 1 HETATM 53 H H06 PBU . . . B 2 -19.449 19.383 6.154 1 44.25 ? H06 PBU 300 A 1 HETATM 54 H H81 PBU . . . B 2 -14.317 17.429 5.113 1 51.34 ? H81 PBU 300 A 1 HETATM 55 H H82 PBU . . . B 2 -15.361 18.682 5.651 1 13.25 ? H82 PBU 300 A 1 HETATM 56 H H91 PBU . . . B 2 -16.406 18.649 3.369 1 54.41 ? H91 PBU 300 A 1 HETATM 57 H H92 PBU . . . B 2 -15.133 17.613 2.873 1 34.2 ? H92 PBU 300 A 1 HETATM 58 H H11 PBU . . . B 2 -13.492 19.307 3.513 1 71.52 ? H11 PBU 300 A 1 HETATM 59 H H12 PBU . . . B 2 -14.764 20.358 3.981 1 11.14 ? H12 PBU 300 A 1 HETATM 60 H H13 PBU . . . B 2 -14.577 19.919 2.334 1 20.35 ? H13 PBU 300 A 1 HETATM 61 H H121 PBU . . . B 2 -15.977 12.168 9.576 1 52.32 ? H121 PBU 300 A 1 HETATM 62 H H122 PBU . . . B 2 -14.46 11.503 10.05 1 35.1 ? H122 PBU 300 A 1 HETATM 63 H H131 PBU . . . B 2 -15.808 13.515 11.747 1 74.34 ? H131 PBU 300 A 1 HETATM 64 H H132 PBU . . . B 2 -16.241 11.855 11.858 1 2 ? H132 PBU 300 A 1 HETATM 65 H H141 PBU . . . B 2 -13.478 12.918 12.244 1 43.43 ? H141 PBU 300 A 1 HETATM 66 H H142 PBU . . . B 2 -13.942 11.283 12.46 1 53.12 ? H142 PBU 300 A 1 HETATM 67 H H143 PBU . . . B 2 -14.54 12.479 13.52 1 63.31 ? H143 PBU 300 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 6324 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 67 #