data_2H43 # _model_server_result.job_id bfwNs9pHP0nVRM2wvDaXvw _model_server_result.datetime_utc '2024-12-26 14:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1}' # _entry.id 2H43 # _exptl.entry_id 2H43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.41 _cell.angle_gamma 90 _cell.entry_id 2H43 _cell.length_a 105 _cell.length_b 47.9 _cell.length_c 171.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,K,L,M 1 1 D,E,F,H,J,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NDG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 G 1 NAG B 470 NAG 5 n I NAG 2 G 2 NAG B 471 NAG 6 n J NAG 1 H 1 NAG E 470 NAG 6 n J NDG 2 H 2 NDG E 471 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 161 1_555 C SG CYS 47 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 55 A CYS 165 1_555 B SG CYS 60 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 64 B CYS 197 1_555 C SG CYS 51 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 68 B CYS 201 1_555 B SG CYS 153 B CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 78 B CYS 211 1_555 B SG CYS 107 B CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 B SG CYS 261 B CYS 394 1_555 B SG CYS 274 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 65 C CYS 153 1_555 C SG CYS 94 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 C SG CYS 238 C CYS 326 1_555 C SG CYS 251 C CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 D SG CYS 51 D CYS 161 1_555 F SG CYS 47 F CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 D SG CYS 55 D CYS 165 1_555 E SG CYS 60 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 E SG CYS 64 E CYS 197 1_555 F SG CYS 51 F CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 E SG CYS 68 E CYS 201 1_555 E SG CYS 153 E CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 E SG CYS 78 E CYS 211 1_555 E SG CYS 107 E CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 E SG CYS 261 E CYS 394 1_555 E SG CYS 274 E CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 F SG CYS 65 F CYS 153 1_555 F SG CYS 94 F CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 F SG CYS 238 F CYS 326 1_555 F SG CYS 251 F CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 231 B ASN 364 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 E ND2 ASN 231 E ASN 364 1_555 J C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 G C PRO 4 I PRO 4 1_555 G N NH2 5 I NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.249 ? covale ? covale4 H C PRO 4 J PRO 4 1_555 H N NH2 5 J NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.25 ? covale ? covale5 I O4 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale6 J O4 NAG . H NAG 1 1_555 J C1 NDG . H NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? metalc ? metalc1 K CA CA . B CA 2 1_555 B OD1 ASP 248 B ASP 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc2 K CA CA . B CA 2 1_555 B OD2 ASP 248 B ASP 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc3 K CA CA . B CA 2 1_555 B OD1 ASP 250 B ASP 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc4 K CA CA . B CA 2 1_555 B O TRP 252 B TRP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc5 L CA CA . B CA 3 1_555 B OD2 ASP 128 B ASP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc6 L CA CA . B CA 3 1_555 B O GLY 130 B GLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc7 L CA CA . B CA 3 1_555 C OE1 GLU 44 C GLU 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.343 ? metalc ? metalc8 M CA CA . C CA 1 1_555 C OD2 ASP 230 C ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc9 M CA CA . C CA 1 1_555 C OD1 ASP 230 C ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc10 M CA CA . C CA 1 1_555 C OD2 ASP 232 C ASP 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc11 M CA CA . C CA 1 1_555 C O PHE 234 C PHE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc12 M CA CA . C CA 1 1_555 C O GLY 236 C GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc13 N CA CA . E CA 2 1_555 E OD2 ASP 248 E ASP 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc14 N CA CA . E CA 2 1_555 E OD1 ASP 248 E ASP 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc15 N CA CA . E CA 2 1_555 E OD1 ASP 250 E ASP 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc16 N CA CA . E CA 2 1_555 E O TRP 252 E TRP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc17 O CA CA . E CA 3 1_555 E O GLY 130 E GLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc18 O CA CA . E CA 3 1_555 F OE1 GLU 44 F GLU 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? metalc ? metalc19 P CA CA . F CA 1 1_555 F OD1 ASP 230 F ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc20 P CA CA . F CA 1 1_555 F OD2 ASP 230 F ASP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc21 P CA CA . F CA 1 1_555 F OD2 ASP 232 F ASP 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc22 P CA CA . F CA 1 1_555 F O PHE 234 F PHE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc23 P CA CA . F CA 1 1_555 F O GLU 235 F GLU 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.372 ? metalc ? metalc24 P CA CA . F CA 1 1_555 F O GLY 236 F GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2H43 _atom_sites.fract_transf_matrix[1][1] 0.009524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002625 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 CA B 1 2 2 CA CA . L 7 CA B 1 3 3 CA CA . M 7 CA C 1 1 1 CA CA . N 7 CA E 1 2 2 CA CA . O 7 CA E 1 3 3 CA CA . P 7 CA F 1 1 1 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 7 _atom_site.Cartn_x -5.078 _atom_site.Cartn_y 5.319 _atom_site.Cartn_z 98.261 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #