data_2H4F # _model_server_result.job_id Ugl_3kj1OfCTakOYGseVcw _model_server_result.datetime_utc '2024-12-12 02:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2H4F # _exptl.entry_id 2H4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H4F _cell.length_a 45.821 _cell.length_b 59.331 _cell.length_c 106.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 10 D LYS 10 1_555 B N ALY 11 D ALY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? covale ? covale2 B C ALY 11 D ALY 11 1_555 B N LEU 12 D LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 A SG CYS 124 A CYS 124 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A SG CYS 127 A CYS 127 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc3 A SG CYS 148 A CYS 148 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A SG CYS 151 A CYS 151 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2H4F _atom_sites.fract_transf_matrix[1][1] 0.021824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1001 1001 ZN ZN . D 4 NAD A 1 702 702 NAD NAD . E 5 HOH A 1 1002 1 HOH HOH . E 5 HOH A 2 1003 2 HOH HOH . E 5 HOH A 3 1004 3 HOH HOH . E 5 HOH A 4 1005 4 HOH HOH . E 5 HOH A 5 1006 5 HOH HOH . E 5 HOH A 6 1007 6 HOH HOH . E 5 HOH A 7 1008 7 HOH HOH . E 5 HOH A 8 1009 8 HOH HOH . E 5 HOH A 9 1010 9 HOH HOH . E 5 HOH A 10 1011 10 HOH HOH . E 5 HOH A 11 1012 11 HOH HOH . E 5 HOH A 12 1013 14 HOH HOH . E 5 HOH A 13 1014 15 HOH HOH . E 5 HOH A 14 1015 16 HOH HOH . E 5 HOH A 15 1016 17 HOH HOH . E 5 HOH A 16 1017 19 HOH HOH . E 5 HOH A 17 1018 21 HOH HOH . E 5 HOH A 18 1019 22 HOH HOH . E 5 HOH A 19 1020 24 HOH HOH . E 5 HOH A 20 1021 26 HOH HOH . E 5 HOH A 21 1022 28 HOH HOH . E 5 HOH A 22 1023 29 HOH HOH . E 5 HOH A 23 1024 30 HOH HOH . E 5 HOH A 24 1025 32 HOH HOH . E 5 HOH A 25 1026 33 HOH HOH . E 5 HOH A 26 1027 34 HOH HOH . E 5 HOH A 27 1028 36 HOH HOH . E 5 HOH A 28 1029 37 HOH HOH . E 5 HOH A 29 1030 38 HOH HOH . E 5 HOH A 30 1031 39 HOH HOH . E 5 HOH A 31 1032 41 HOH HOH . E 5 HOH A 32 1033 42 HOH HOH . E 5 HOH A 33 1034 44 HOH HOH . E 5 HOH A 34 1035 45 HOH HOH . E 5 HOH A 35 1036 47 HOH HOH . E 5 HOH A 36 1037 48 HOH HOH . E 5 HOH A 37 1038 49 HOH HOH . E 5 HOH A 38 1039 52 HOH HOH . E 5 HOH A 39 1040 53 HOH HOH . E 5 HOH A 40 1041 55 HOH HOH . E 5 HOH A 41 1042 56 HOH HOH . E 5 HOH A 42 1043 57 HOH HOH . E 5 HOH A 43 1044 58 HOH HOH . E 5 HOH A 44 1045 59 HOH HOH . E 5 HOH A 45 1046 60 HOH HOH . E 5 HOH A 46 1047 61 HOH HOH . E 5 HOH A 47 1048 62 HOH HOH . E 5 HOH A 48 1049 64 HOH HOH . E 5 HOH A 49 1050 65 HOH HOH . E 5 HOH A 50 1051 66 HOH HOH . E 5 HOH A 51 1052 69 HOH HOH . E 5 HOH A 52 1053 71 HOH HOH . E 5 HOH A 53 1054 72 HOH HOH . E 5 HOH A 54 1055 73 HOH HOH . E 5 HOH A 55 1056 75 HOH HOH . E 5 HOH A 56 1057 76 HOH HOH . E 5 HOH A 57 1058 77 HOH HOH . E 5 HOH A 58 1059 84 HOH HOH . E 5 HOH A 59 1060 85 HOH HOH . E 5 HOH A 60 1061 86 HOH HOH . E 5 HOH A 61 1062 89 HOH HOH . E 5 HOH A 62 1063 90 HOH HOH . E 5 HOH A 63 1064 91 HOH HOH . E 5 HOH A 64 1065 92 HOH HOH . E 5 HOH A 65 1066 93 HOH HOH . E 5 HOH A 66 1067 95 HOH HOH . E 5 HOH A 67 1068 96 HOH HOH . F 5 HOH D 1 31 31 HOH HOH . F 5 HOH D 2 40 40 HOH HOH . F 5 HOH D 3 94 94 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -15.717 _atom_site.Cartn_y 39.862 _atom_site.Cartn_z 20.834 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #