data_2H4H # _model_server_result.job_id hNTUaruaIncMKJDUVPzrTQ _model_server_result.datetime_utc '2024-11-15 02:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 2H4H # _exptl.entry_id 2H4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H4H _cell.length_a 42.26 _cell.length_b 58.676 _cell.length_c 106.846 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 10 B LYS 10 1_555 B N ALY 11 B ALY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.533 ? covale ? covale2 B C ALY 11 B ALY 11 1_555 B N LEU 12 B LEU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? metalc ? metalc1 A SG CYS 124 A CYS 124 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc2 A SG CYS 127 A CYS 127 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A SG CYS 148 A CYS 148 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 A SG CYS 151 A CYS 151 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 265 n n PA O2A NAD sing 266 n n PA O5B NAD sing 267 n n PA O3 NAD sing 268 n n O2A HOA2 NAD sing 269 n n O5B C5B NAD sing 270 n n C5B C4B NAD sing 271 n n C5B H51A NAD sing 272 n n C5B H52A NAD sing 273 n n C4B O4B NAD sing 274 n n C4B C3B NAD sing 275 n n C4B H4B NAD sing 276 n n O4B C1B NAD sing 277 n n C3B O3B NAD sing 278 n n C3B C2B NAD sing 279 n n C3B H3B NAD sing 280 n n O3B HO3A NAD sing 281 n n C2B O2B NAD sing 282 n n C2B C1B NAD sing 283 n n C2B H2B NAD sing 284 n n O2B HO2A NAD sing 285 n n C1B N9A NAD sing 286 n n C1B H1B NAD sing 287 n n N9A C8A NAD sing 288 n y N9A C4A NAD sing 289 n y C8A N7A NAD doub 290 n y C8A H8A NAD sing 291 n n N7A C5A NAD sing 292 n y C5A C6A NAD sing 293 n y C5A C4A NAD doub 294 n y C6A N6A NAD sing 295 n n C6A N1A NAD doub 296 n y N6A H61A NAD sing 297 n n N6A H62A NAD sing 298 n n N1A C2A NAD sing 299 n y C2A N3A NAD doub 300 n y C2A H2A NAD sing 301 n n N3A C4A NAD sing 302 n y O3 PN NAD sing 303 n n PN O1N NAD doub 304 n n PN O2N NAD sing 305 n n PN O5D NAD sing 306 n n O5D C5D NAD sing 307 n n C5D C4D NAD sing 308 n n C5D H51N NAD sing 309 n n C5D H52N NAD sing 310 n n C4D O4D NAD sing 311 n n C4D C3D NAD sing 312 n n C4D H4D NAD sing 313 n n O4D C1D NAD sing 314 n n C3D O3D NAD sing 315 n n C3D C2D NAD sing 316 n n C3D H3D NAD sing 317 n n O3D HO3N NAD sing 318 n n C2D O2D NAD sing 319 n n C2D C1D NAD sing 320 n n C2D H2D NAD sing 321 n n O2D HO2N NAD sing 322 n n C1D N1N NAD sing 323 n n C1D H1D NAD sing 324 n n N1N C2N NAD sing 325 n y N1N C6N NAD doub 326 n y C2N C3N NAD doub 327 n y C2N H2N NAD sing 328 n n C3N C7N NAD sing 329 n n C3N C4N NAD sing 330 n y C7N O7N NAD doub 331 n n C7N N7N NAD sing 332 n n N7N H71N NAD sing 333 n n N7N H72N NAD sing 334 n n C4N C5N NAD doub 335 n y C4N H4N NAD sing 336 n n C5N C6N NAD sing 337 n y C5N H5N NAD sing 338 n n C6N H6N NAD sing 339 n n # _atom_sites.entry_id 2H4H _atom_sites.fract_transf_matrix[1][1] 0.023663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1001 1001 ZN ZN . D 4 NAD A 1 702 702 NAD NAD . E 5 HOH A 1 1002 1 HOH HOH . E 5 HOH A 2 1003 2 HOH HOH . E 5 HOH A 3 1004 3 HOH HOH . E 5 HOH A 4 1005 4 HOH HOH . E 5 HOH A 5 1006 5 HOH HOH . E 5 HOH A 6 1007 6 HOH HOH . E 5 HOH A 7 1008 7 HOH HOH . E 5 HOH A 8 1009 8 HOH HOH . E 5 HOH A 9 1010 9 HOH HOH . E 5 HOH A 10 1011 10 HOH HOH . E 5 HOH A 11 1012 11 HOH HOH . E 5 HOH A 12 1013 14 HOH HOH . E 5 HOH A 13 1014 15 HOH HOH . E 5 HOH A 14 1015 16 HOH HOH . E 5 HOH A 15 1016 17 HOH HOH . E 5 HOH A 16 1017 18 HOH HOH . E 5 HOH A 17 1018 19 HOH HOH . E 5 HOH A 18 1019 20 HOH HOH . E 5 HOH A 19 1020 21 HOH HOH . E 5 HOH A 20 1021 22 HOH HOH . E 5 HOH A 21 1022 23 HOH HOH . E 5 HOH A 22 1023 24 HOH HOH . E 5 HOH A 23 1024 26 HOH HOH . E 5 HOH A 24 1025 28 HOH HOH . E 5 HOH A 25 1026 29 HOH HOH . E 5 HOH A 26 1027 30 HOH HOH . E 5 HOH A 27 1028 32 HOH HOH . E 5 HOH A 28 1029 33 HOH HOH . E 5 HOH A 29 1030 34 HOH HOH . E 5 HOH A 30 1031 36 HOH HOH . E 5 HOH A 31 1032 37 HOH HOH . E 5 HOH A 32 1033 38 HOH HOH . E 5 HOH A 33 1034 39 HOH HOH . E 5 HOH A 34 1035 41 HOH HOH . E 5 HOH A 35 1036 42 HOH HOH . E 5 HOH A 36 1037 43 HOH HOH . E 5 HOH A 37 1038 44 HOH HOH . E 5 HOH A 38 1039 45 HOH HOH . E 5 HOH A 39 1040 46 HOH HOH . E 5 HOH A 40 1041 47 HOH HOH . E 5 HOH A 41 1042 48 HOH HOH . E 5 HOH A 42 1043 49 HOH HOH . E 5 HOH A 43 1044 50 HOH HOH . E 5 HOH A 44 1045 51 HOH HOH . E 5 HOH A 45 1046 52 HOH HOH . E 5 HOH A 46 1047 53 HOH HOH . E 5 HOH A 47 1048 54 HOH HOH . E 5 HOH A 48 1049 55 HOH HOH . E 5 HOH A 49 1050 56 HOH HOH . E 5 HOH A 50 1051 57 HOH HOH . E 5 HOH A 51 1052 58 HOH HOH . E 5 HOH A 52 1053 59 HOH HOH . E 5 HOH A 53 1054 60 HOH HOH . E 5 HOH A 54 1055 61 HOH HOH . E 5 HOH A 55 1056 62 HOH HOH . E 5 HOH A 56 1057 64 HOH HOH . E 5 HOH A 57 1058 65 HOH HOH . E 5 HOH A 58 1059 66 HOH HOH . E 5 HOH A 59 1060 68 HOH HOH . E 5 HOH A 60 1061 69 HOH HOH . E 5 HOH A 61 1062 71 HOH HOH . E 5 HOH A 62 1063 72 HOH HOH . E 5 HOH A 63 1064 73 HOH HOH . E 5 HOH A 64 1065 75 HOH HOH . E 5 HOH A 65 1066 76 HOH HOH . E 5 HOH A 66 1067 77 HOH HOH . E 5 HOH A 67 1068 80 HOH HOH . E 5 HOH A 68 1069 81 HOH HOH . E 5 HOH A 69 1070 83 HOH HOH . E 5 HOH A 70 1071 84 HOH HOH . E 5 HOH A 71 1072 85 HOH HOH . E 5 HOH A 72 1073 86 HOH HOH . E 5 HOH A 73 1074 88 HOH HOH . E 5 HOH A 74 1075 89 HOH HOH . E 5 HOH A 75 1076 90 HOH HOH . E 5 HOH A 76 1077 91 HOH HOH . E 5 HOH A 77 1078 92 HOH HOH . E 5 HOH A 78 1079 93 HOH HOH . E 5 HOH A 79 1080 95 HOH HOH . E 5 HOH A 80 1081 96 HOH HOH . E 5 HOH A 81 1082 97 HOH HOH . E 5 HOH A 82 1083 98 HOH HOH . E 5 HOH A 83 1084 99 HOH HOH . E 5 HOH A 84 1085 100 HOH HOH . E 5 HOH A 85 1086 102 HOH HOH . E 5 HOH A 86 1087 103 HOH HOH . F 5 HOH B 1 31 31 HOH HOH . F 5 HOH B 2 40 40 HOH HOH . F 5 HOH B 3 79 79 HOH HOH . F 5 HOH B 4 82 82 HOH HOH . F 5 HOH B 5 94 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 4 9.733 20.831 12.476 1 20.68 ? PA NAD 702 A 1 HETATM 2 O O1A NAD . . . D 4 10.317 20.89 13.865 1 26.11 ? O1A NAD 702 A 1 HETATM 3 O O2A NAD . . . D 4 9.947 21.904 11.42 1 20.87 ? O2A NAD 702 A 1 HETATM 4 O O5B NAD . . . D 4 10.154 19.395 11.875 1 21.59 ? O5B NAD 702 A 1 HETATM 5 C C5B NAD . . . D 4 9.763 19.067 10.53 1 17.75 ? C5B NAD 702 A 1 HETATM 6 C C4B NAD . . . D 4 10.612 17.852 10.19 1 18.54 ? C4B NAD 702 A 1 HETATM 7 O O4B NAD . . . D 4 10.26 17.439 8.887 1 17.35 ? O4B NAD 702 A 1 HETATM 8 C C3B NAD . . . D 4 12.093 18.167 10.114 1 19.59 ? C3B NAD 702 A 1 HETATM 9 O O3B NAD . . . D 4 12.722 17.05 10.738 1 20.25 ? O3B NAD 702 A 1 HETATM 10 C C2B NAD . . . D 4 12.372 18.221 8.618 1 18.33 ? C2B NAD 702 A 1 HETATM 11 O O2B NAD . . . D 4 13.701 17.868 8.281 1 24.25 ? O2B NAD 702 A 1 HETATM 12 C C1B NAD . . . D 4 11.416 17.164 8.123 1 17.88 ? C1B NAD 702 A 1 HETATM 13 N N9A NAD . . . D 4 10.986 17.337 6.728 1 16.46 ? N9A NAD 702 A 1 HETATM 14 C C8A NAD . . . D 4 10.805 18.539 6.132 1 15.01 ? C8A NAD 702 A 1 HETATM 15 N N7A NAD . . . D 4 10.392 18.334 4.872 1 16.46 ? N7A NAD 702 A 1 HETATM 16 C C5A NAD . . . D 4 10.359 16.999 4.649 1 16.58 ? C5A NAD 702 A 1 HETATM 17 C C6A NAD . . . D 4 10.017 16.129 3.528 1 17.26 ? C6A NAD 702 A 1 HETATM 18 N N6A NAD . . . D 4 9.626 16.694 2.352 1 14.32 ? N6A NAD 702 A 1 HETATM 19 N N1A NAD . . . D 4 10.091 14.778 3.735 1 16.61 ? N1A NAD 702 A 1 HETATM 20 C C2A NAD . . . D 4 10.474 14.214 4.888 1 16.57 ? C2A NAD 702 A 1 HETATM 21 N N3A NAD . . . D 4 10.787 14.962 5.934 1 16.16 ? N3A NAD 702 A 1 HETATM 22 C C4A NAD . . . D 4 10.739 16.333 5.882 1 16.4 ? C4A NAD 702 A 1 HETATM 23 O O3 NAD . . . D 4 8.208 20.563 12.51 1 18.85 ? O3 NAD 702 A 1 HETATM 24 P PN NAD . . . D 4 7.377 19.701 13.551 1 21.64 ? PN NAD 702 A 1 HETATM 25 O O1N NAD . . . D 4 8.018 18.431 13.919 1 21.61 ? O1N NAD 702 A 1 HETATM 26 O O2N NAD . . . D 4 5.967 19.71 13.005 1 24.46 ? O2N NAD 702 A 1 HETATM 27 O O5D NAD . . . D 4 7.295 20.559 14.914 1 24.79 ? O5D NAD 702 A 1 HETATM 28 C C5D NAD . . . D 4 7.495 21.949 15.009 1 27.34 ? C5D NAD 702 A 1 HETATM 29 C C4D NAD . . . D 4 6.207 22.744 14.977 1 25.99 ? C4D NAD 702 A 1 HETATM 30 O O4D NAD . . . D 4 6.162 23.253 13.665 1 31.09 ? O4D NAD 702 A 1 HETATM 31 C C3D NAD . . . D 4 4.888 22.008 15.095 1 26.06 ? C3D NAD 702 A 1 HETATM 32 O O3D NAD . . . D 4 4.338 22.335 16.381 1 27.15 ? O3D NAD 702 A 1 HETATM 33 C C2D NAD . . . D 4 4.048 22.543 13.924 1 24.91 ? C2D NAD 702 A 1 HETATM 34 O O2D NAD . . . D 4 2.759 23.065 14.275 1 22.6 ? O2D NAD 702 A 1 HETATM 35 C C1D NAD . . . D 4 4.852 23.703 13.395 1 25.57 ? C1D NAD 702 A 1 HETATM 36 N N1N NAD . . . D 4 4.776 23.95 11.957 1 23.65 ? N1N NAD 702 A 1 HETATM 37 C C2N NAD . . . D 4 3.749 23.527 11.212 1 22.1 ? C2N NAD 702 A 1 HETATM 38 C C3N NAD . . . D 4 3.75 23.818 9.853 1 20.75 ? C3N NAD 702 A 1 HETATM 39 C C7N NAD . . . D 4 2.622 23.345 9.03 1 18.69 ? C7N NAD 702 A 1 HETATM 40 O O7N NAD . . . D 4 1.572 23.302 9.61 1 17.14 ? O7N NAD 702 A 1 HETATM 41 N N7N NAD . . . D 4 2.793 22.998 7.74 1 17.38 ? N7N NAD 702 A 1 HETATM 42 C C4N NAD . . . D 4 4.771 24.551 9.275 1 18.74 ? C4N NAD 702 A 1 HETATM 43 C C5N NAD . . . D 4 5.791 24.981 10.08 1 20.95 ? C5N NAD 702 A 1 HETATM 44 C C6N NAD . . . D 4 5.77 24.66 11.434 1 21.93 ? C6N NAD 702 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #