data_2H57 # _model_server_result.job_id ZpZ7T_K8S6uZJmrUJ2t9yQ _model_server_result.datetime_utc '2024-11-27 18:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 2H57 # _exptl.entry_id 2H57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H57 _cell.length_a 80.058 _cell.length_b 134.885 _cell.length_c 63.884 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,S 1 1 B,J,K,L,M,N,T 2 1 C,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 J N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 35 A THR 31 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A OG1 THR 54 A THR 50 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc3 E O2B GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc4 E O2G GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc5 D MG MG . A MG 202 1_555 S O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc6 D MG MG . A MG 202 1_555 S O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc7 B OG1 THR 35 B THR 31 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc8 B OG1 THR 54 B THR 50 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc9 K O2G GTP . B GTP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc10 K O2B GTP . B GTP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc11 J MG MG . B MG 202 1_555 T O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc12 J MG MG . B MG 202 1_555 T O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc13 C OG1 THR 35 C THR 31 1_555 O MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc14 C OG1 THR 54 C THR 50 1_555 O MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc15 P O2G GTP . C GTP 201 1_555 O MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc16 P O2B GTP . C GTP 201 1_555 O MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc17 O MG MG . C MG 202 1_555 U O HOH . C HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc18 O MG MG . C MG 202 1_555 U O HOH . C HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2H57 _atom_sites.fract_transf_matrix[1][1] 0.01249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 202 202 MG MG . E 3 GTP A 1 201 201 GTP GTP . F 4 UNX A 1 503 503 UNX UNX . G 4 UNX A 1 504 504 UNX UNX . H 4 UNX A 1 505 505 UNX UNX . I 4 UNX A 1 508 508 UNX UNX . J 2 MG B 1 202 202 MG MG . K 3 GTP B 1 201 201 GTP GTP . L 4 UNX B 1 502 502 UNX UNX . M 4 UNX B 1 506 506 UNX UNX . N 4 UNX B 1 507 507 UNX UNX . O 2 MG C 1 202 202 MG MG . P 3 GTP C 1 201 201 GTP GTP . Q 4 UNX C 1 501 501 UNX UNX . R 4 UNX C 1 509 509 UNX UNX . S 5 HOH A 1 301 301 HOH HOH . S 5 HOH A 2 302 302 HOH HOH . S 5 HOH A 3 303 303 HOH HOH . S 5 HOH A 4 305 305 HOH HOH . S 5 HOH A 5 307 307 HOH HOH . S 5 HOH A 6 308 308 HOH HOH . S 5 HOH A 7 309 309 HOH HOH . S 5 HOH A 8 315 315 HOH HOH . S 5 HOH A 9 317 317 HOH HOH . S 5 HOH A 10 318 318 HOH HOH . S 5 HOH A 11 321 321 HOH HOH . S 5 HOH A 12 324 324 HOH HOH . S 5 HOH A 13 325 325 HOH HOH . S 5 HOH A 14 328 328 HOH HOH . S 5 HOH A 15 329 329 HOH HOH . S 5 HOH A 16 330 330 HOH HOH . S 5 HOH A 17 331 331 HOH HOH . S 5 HOH A 18 337 337 HOH HOH . S 5 HOH A 19 340 340 HOH HOH . S 5 HOH A 20 341 341 HOH HOH . S 5 HOH A 21 342 342 HOH HOH . S 5 HOH A 22 343 343 HOH HOH . S 5 HOH A 23 347 347 HOH HOH . S 5 HOH A 24 348 348 HOH HOH . S 5 HOH A 25 351 351 HOH HOH . S 5 HOH A 26 352 352 HOH HOH . S 5 HOH A 27 356 356 HOH HOH . S 5 HOH A 28 362 362 HOH HOH . S 5 HOH A 29 365 365 HOH HOH . S 5 HOH A 30 366 366 HOH HOH . S 5 HOH A 31 367 367 HOH HOH . S 5 HOH A 32 368 368 HOH HOH . S 5 HOH A 33 369 369 HOH HOH . S 5 HOH A 34 371 371 HOH HOH . S 5 HOH A 35 373 373 HOH HOH . S 5 HOH A 36 375 375 HOH HOH . S 5 HOH A 37 376 376 HOH HOH . S 5 HOH A 38 378 378 HOH HOH . S 5 HOH A 39 379 379 HOH HOH . S 5 HOH A 40 382 382 HOH HOH . S 5 HOH A 41 386 386 HOH HOH . S 5 HOH A 42 390 390 HOH HOH . S 5 HOH A 43 393 393 HOH HOH . S 5 HOH A 44 394 394 HOH HOH . S 5 HOH A 45 395 395 HOH HOH . S 5 HOH A 46 401 401 HOH HOH . S 5 HOH A 47 402 402 HOH HOH . S 5 HOH A 48 403 403 HOH HOH . S 5 HOH A 49 404 404 HOH HOH . S 5 HOH A 50 405 405 HOH HOH . S 5 HOH A 51 413 413 HOH HOH . S 5 HOH A 52 419 419 HOH HOH . S 5 HOH A 53 420 420 HOH HOH . S 5 HOH A 54 421 421 HOH HOH . S 5 HOH A 55 422 422 HOH HOH . S 5 HOH A 56 423 423 HOH HOH . S 5 HOH A 57 424 424 HOH HOH . T 5 HOH B 1 306 306 HOH HOH . T 5 HOH B 2 313 313 HOH HOH . T 5 HOH B 3 322 322 HOH HOH . T 5 HOH B 4 327 327 HOH HOH . T 5 HOH B 5 332 332 HOH HOH . T 5 HOH B 6 333 333 HOH HOH . T 5 HOH B 7 335 335 HOH HOH . T 5 HOH B 8 336 336 HOH HOH . T 5 HOH B 9 338 338 HOH HOH . T 5 HOH B 10 339 339 HOH HOH . T 5 HOH B 11 344 344 HOH HOH . T 5 HOH B 12 345 345 HOH HOH . T 5 HOH B 13 346 346 HOH HOH . T 5 HOH B 14 349 349 HOH HOH . T 5 HOH B 15 353 353 HOH HOH . T 5 HOH B 16 354 354 HOH HOH . T 5 HOH B 17 355 355 HOH HOH . T 5 HOH B 18 357 357 HOH HOH . T 5 HOH B 19 359 359 HOH HOH . T 5 HOH B 20 360 360 HOH HOH . T 5 HOH B 21 361 361 HOH HOH . T 5 HOH B 22 370 370 HOH HOH . T 5 HOH B 23 372 372 HOH HOH . T 5 HOH B 24 383 383 HOH HOH . T 5 HOH B 25 385 385 HOH HOH . T 5 HOH B 26 387 387 HOH HOH . T 5 HOH B 27 391 391 HOH HOH . T 5 HOH B 28 397 397 HOH HOH . T 5 HOH B 29 398 398 HOH HOH . T 5 HOH B 30 399 399 HOH HOH . T 5 HOH B 31 406 406 HOH HOH . T 5 HOH B 32 407 407 HOH HOH . T 5 HOH B 33 408 408 HOH HOH . T 5 HOH B 34 409 409 HOH HOH . T 5 HOH B 35 425 425 HOH HOH . T 5 HOH B 36 426 426 HOH HOH . T 5 HOH B 37 427 427 HOH HOH . T 5 HOH B 38 428 428 HOH HOH . T 5 HOH B 39 430 430 HOH HOH . T 5 HOH B 40 431 431 HOH HOH . T 5 HOH B 41 433 433 HOH HOH . U 5 HOH C 1 304 304 HOH HOH . U 5 HOH C 2 310 310 HOH HOH . U 5 HOH C 3 311 311 HOH HOH . U 5 HOH C 4 312 312 HOH HOH . U 5 HOH C 5 314 314 HOH HOH . U 5 HOH C 6 316 316 HOH HOH . U 5 HOH C 7 319 319 HOH HOH . U 5 HOH C 8 320 320 HOH HOH . U 5 HOH C 9 323 323 HOH HOH . U 5 HOH C 10 326 326 HOH HOH . U 5 HOH C 11 334 334 HOH HOH . U 5 HOH C 12 350 350 HOH HOH . U 5 HOH C 13 358 358 HOH HOH . U 5 HOH C 14 363 363 HOH HOH . U 5 HOH C 15 364 364 HOH HOH . U 5 HOH C 16 374 374 HOH HOH . U 5 HOH C 17 377 377 HOH HOH . U 5 HOH C 18 380 380 HOH HOH . U 5 HOH C 19 381 381 HOH HOH . U 5 HOH C 20 384 384 HOH HOH . U 5 HOH C 21 388 388 HOH HOH . U 5 HOH C 22 389 389 HOH HOH . U 5 HOH C 23 392 392 HOH HOH . U 5 HOH C 24 396 396 HOH HOH . U 5 HOH C 25 400 400 HOH HOH . U 5 HOH C 26 410 410 HOH HOH . U 5 HOH C 27 411 411 HOH HOH . U 5 HOH C 28 412 412 HOH HOH . U 5 HOH C 29 414 414 HOH HOH . U 5 HOH C 30 415 415 HOH HOH . U 5 HOH C 31 416 416 HOH HOH . U 5 HOH C 32 417 417 HOH HOH . U 5 HOH C 33 418 418 HOH HOH . U 5 HOH C 34 429 429 HOH HOH . U 5 HOH C 35 432 432 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.148 _atom_site.Cartn_y 40.049 _atom_site.Cartn_z 22.97 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #