data_2H5X # _model_server_result.job_id mCDx4KencGOszFw5lglVog _model_server_result.datetime_utc '2025-03-04 04:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2H5X # _exptl.entry_id 2H5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H5X _cell.length_a 137.642 _cell.length_b 137.642 _cell.length_c 88.97 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 88.97 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2H5X _atom_sites.fract_transf_matrix[1][1] 0.007265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 501 501 GOL GOL . F 2 GOL B 1 502 502 GOL GOL . G 2 GOL C 1 503 503 GOL GOL . H 2 GOL D 1 504 504 GOL GOL . I 3 HOH A 1 601 601 HOH HOH . I 3 HOH A 2 602 602 HOH HOH . I 3 HOH A 3 605 605 HOH HOH . I 3 HOH A 4 608 608 HOH HOH . I 3 HOH A 5 613 613 HOH HOH . I 3 HOH A 6 616 616 HOH HOH . I 3 HOH A 7 623 623 HOH HOH . I 3 HOH A 8 630 630 HOH HOH . I 3 HOH A 9 631 631 HOH HOH . I 3 HOH A 10 632 632 HOH HOH . I 3 HOH A 11 634 634 HOH HOH . I 3 HOH A 12 637 637 HOH HOH . I 3 HOH A 13 639 639 HOH HOH . I 3 HOH A 14 645 645 HOH HOH . I 3 HOH A 15 648 648 HOH HOH . I 3 HOH A 16 653 653 HOH HOH . I 3 HOH A 17 654 654 HOH HOH . I 3 HOH A 18 664 664 HOH HOH . I 3 HOH A 19 668 668 HOH HOH . I 3 HOH A 20 673 673 HOH HOH . I 3 HOH A 21 676 676 HOH HOH . I 3 HOH A 22 677 677 HOH HOH . I 3 HOH A 23 678 678 HOH HOH . I 3 HOH A 24 680 680 HOH HOH . I 3 HOH A 25 690 690 HOH HOH . I 3 HOH A 26 691 691 HOH HOH . I 3 HOH A 27 692 692 HOH HOH . I 3 HOH A 28 693 693 HOH HOH . I 3 HOH A 29 697 697 HOH HOH . I 3 HOH A 30 698 698 HOH HOH . I 3 HOH A 31 701 701 HOH HOH . I 3 HOH A 32 704 704 HOH HOH . I 3 HOH A 33 723 723 HOH HOH . I 3 HOH A 34 727 727 HOH HOH . I 3 HOH A 35 730 730 HOH HOH . I 3 HOH A 36 731 731 HOH HOH . I 3 HOH A 37 732 732 HOH HOH . I 3 HOH A 38 745 745 HOH HOH . I 3 HOH A 39 748 748 HOH HOH . I 3 HOH A 40 766 766 HOH HOH . I 3 HOH A 41 770 770 HOH HOH . I 3 HOH A 42 771 771 HOH HOH . I 3 HOH A 43 772 772 HOH HOH . I 3 HOH A 44 773 773 HOH HOH . I 3 HOH A 45 774 774 HOH HOH . I 3 HOH A 46 782 782 HOH HOH . I 3 HOH A 47 783 783 HOH HOH . I 3 HOH A 48 784 784 HOH HOH . I 3 HOH A 49 794 794 HOH HOH . I 3 HOH A 50 796 796 HOH HOH . I 3 HOH A 51 797 797 HOH HOH . I 3 HOH A 52 800 800 HOH HOH . I 3 HOH A 53 801 801 HOH HOH . I 3 HOH A 54 810 810 HOH HOH . I 3 HOH A 55 811 811 HOH HOH . I 3 HOH A 56 812 812 HOH HOH . I 3 HOH A 57 813 813 HOH HOH . I 3 HOH A 58 816 816 HOH HOH . I 3 HOH A 59 820 820 HOH HOH . I 3 HOH A 60 827 827 HOH HOH . I 3 HOH A 61 842 842 HOH HOH . I 3 HOH A 62 867 867 HOH HOH . I 3 HOH A 63 868 868 HOH HOH . I 3 HOH A 64 870 870 HOH HOH . J 3 HOH B 1 603 603 HOH HOH . J 3 HOH B 2 604 604 HOH HOH . J 3 HOH B 3 609 609 HOH HOH . J 3 HOH B 4 611 611 HOH HOH . J 3 HOH B 5 617 617 HOH HOH . J 3 HOH B 6 619 619 HOH HOH . J 3 HOH B 7 622 622 HOH HOH . J 3 HOH B 8 635 635 HOH HOH . J 3 HOH B 9 636 636 HOH HOH . J 3 HOH B 10 640 640 HOH HOH . J 3 HOH B 11 641 641 HOH HOH . J 3 HOH B 12 642 642 HOH HOH . J 3 HOH B 13 658 658 HOH HOH . J 3 HOH B 14 660 660 HOH HOH . J 3 HOH B 15 661 661 HOH HOH . J 3 HOH B 16 665 665 HOH HOH . J 3 HOH B 17 666 666 HOH HOH . J 3 HOH B 18 671 671 HOH HOH . J 3 HOH B 19 672 672 HOH HOH . J 3 HOH B 20 682 682 HOH HOH . J 3 HOH B 21 683 683 HOH HOH . J 3 HOH B 22 684 684 HOH HOH . J 3 HOH B 23 685 685 HOH HOH . J 3 HOH B 24 686 686 HOH HOH . J 3 HOH B 25 687 687 HOH HOH . J 3 HOH B 26 688 688 HOH HOH . J 3 HOH B 27 689 689 HOH HOH . J 3 HOH B 28 695 695 HOH HOH . J 3 HOH B 29 700 700 HOH HOH . J 3 HOH B 30 706 706 HOH HOH . J 3 HOH B 31 707 707 HOH HOH . J 3 HOH B 32 708 708 HOH HOH . J 3 HOH B 33 714 714 HOH HOH . J 3 HOH B 34 719 719 HOH HOH . J 3 HOH B 35 722 722 HOH HOH . J 3 HOH B 36 728 728 HOH HOH . J 3 HOH B 37 729 729 HOH HOH . J 3 HOH B 38 733 733 HOH HOH . J 3 HOH B 39 734 734 HOH HOH . J 3 HOH B 40 750 750 HOH HOH . J 3 HOH B 41 775 775 HOH HOH . J 3 HOH B 42 776 776 HOH HOH . J 3 HOH B 43 777 777 HOH HOH . J 3 HOH B 44 780 780 HOH HOH . J 3 HOH B 45 781 781 HOH HOH . J 3 HOH B 46 786 786 HOH HOH . J 3 HOH B 47 787 787 HOH HOH . J 3 HOH B 48 795 795 HOH HOH . J 3 HOH B 49 802 802 HOH HOH . J 3 HOH B 50 804 804 HOH HOH . J 3 HOH B 51 805 805 HOH HOH . J 3 HOH B 52 809 809 HOH HOH . J 3 HOH B 53 814 814 HOH HOH . J 3 HOH B 54 815 815 HOH HOH . J 3 HOH B 55 818 818 HOH HOH . J 3 HOH B 56 819 819 HOH HOH . J 3 HOH B 57 826 826 HOH HOH . J 3 HOH B 58 828 828 HOH HOH . J 3 HOH B 59 829 829 HOH HOH . J 3 HOH B 60 830 830 HOH HOH . J 3 HOH B 61 831 831 HOH HOH . J 3 HOH B 62 832 832 HOH HOH . J 3 HOH B 63 833 833 HOH HOH . J 3 HOH B 64 834 834 HOH HOH . J 3 HOH B 65 838 838 HOH HOH . J 3 HOH B 66 841 841 HOH HOH . J 3 HOH B 67 844 844 HOH HOH . J 3 HOH B 68 850 850 HOH HOH . J 3 HOH B 69 861 861 HOH HOH . J 3 HOH B 70 862 862 HOH HOH . J 3 HOH B 71 863 863 HOH HOH . J 3 HOH B 72 864 864 HOH HOH . J 3 HOH B 73 865 865 HOH HOH . J 3 HOH B 74 866 866 HOH HOH . K 3 HOH C 1 612 612 HOH HOH . K 3 HOH C 2 614 614 HOH HOH . K 3 HOH C 3 615 615 HOH HOH . K 3 HOH C 4 618 618 HOH HOH . K 3 HOH C 5 624 624 HOH HOH . K 3 HOH C 6 626 626 HOH HOH . K 3 HOH C 7 628 628 HOH HOH . K 3 HOH C 8 638 638 HOH HOH . K 3 HOH C 9 643 643 HOH HOH . K 3 HOH C 10 646 646 HOH HOH . K 3 HOH C 11 649 649 HOH HOH . K 3 HOH C 12 651 651 HOH HOH . K 3 HOH C 13 655 655 HOH HOH . K 3 HOH C 14 657 657 HOH HOH . K 3 HOH C 15 662 662 HOH HOH . K 3 HOH C 16 663 663 HOH HOH . K 3 HOH C 17 667 667 HOH HOH . K 3 HOH C 18 670 670 HOH HOH . K 3 HOH C 19 674 674 HOH HOH . K 3 HOH C 20 694 694 HOH HOH . K 3 HOH C 21 696 696 HOH HOH . K 3 HOH C 22 705 705 HOH HOH . K 3 HOH C 23 709 709 HOH HOH . K 3 HOH C 24 711 711 HOH HOH . K 3 HOH C 25 712 712 HOH HOH . K 3 HOH C 26 716 716 HOH HOH . K 3 HOH C 27 717 717 HOH HOH . K 3 HOH C 28 718 718 HOH HOH . K 3 HOH C 29 720 720 HOH HOH . K 3 HOH C 30 721 721 HOH HOH . K 3 HOH C 31 726 726 HOH HOH . K 3 HOH C 32 735 735 HOH HOH . K 3 HOH C 33 736 736 HOH HOH . K 3 HOH C 34 737 737 HOH HOH . K 3 HOH C 35 741 741 HOH HOH . K 3 HOH C 36 742 742 HOH HOH . K 3 HOH C 37 751 751 HOH HOH . K 3 HOH C 38 752 752 HOH HOH . K 3 HOH C 39 753 753 HOH HOH . K 3 HOH C 40 754 754 HOH HOH . K 3 HOH C 41 755 755 HOH HOH . K 3 HOH C 42 756 756 HOH HOH . K 3 HOH C 43 762 762 HOH HOH . K 3 HOH C 44 778 778 HOH HOH . K 3 HOH C 45 779 779 HOH HOH . K 3 HOH C 46 788 788 HOH HOH . K 3 HOH C 47 789 789 HOH HOH . K 3 HOH C 48 790 790 HOH HOH . K 3 HOH C 49 791 791 HOH HOH . K 3 HOH C 50 792 792 HOH HOH . K 3 HOH C 51 793 793 HOH HOH . K 3 HOH C 52 798 798 HOH HOH . K 3 HOH C 53 799 799 HOH HOH . K 3 HOH C 54 806 806 HOH HOH . K 3 HOH C 55 807 807 HOH HOH . K 3 HOH C 56 821 821 HOH HOH . K 3 HOH C 57 822 822 HOH HOH . K 3 HOH C 58 823 823 HOH HOH . K 3 HOH C 59 824 824 HOH HOH . K 3 HOH C 60 845 845 HOH HOH . K 3 HOH C 61 848 848 HOH HOH . L 3 HOH D 1 606 606 HOH HOH . L 3 HOH D 2 607 607 HOH HOH . L 3 HOH D 3 610 610 HOH HOH . L 3 HOH D 4 620 620 HOH HOH . L 3 HOH D 5 621 621 HOH HOH . L 3 HOH D 6 625 625 HOH HOH . L 3 HOH D 7 627 627 HOH HOH . L 3 HOH D 8 629 629 HOH HOH . L 3 HOH D 9 633 633 HOH HOH . L 3 HOH D 10 644 644 HOH HOH . L 3 HOH D 11 647 647 HOH HOH . L 3 HOH D 12 650 650 HOH HOH . L 3 HOH D 13 652 652 HOH HOH . L 3 HOH D 14 656 656 HOH HOH . L 3 HOH D 15 659 659 HOH HOH . L 3 HOH D 16 669 669 HOH HOH . L 3 HOH D 17 675 675 HOH HOH . L 3 HOH D 18 679 679 HOH HOH . L 3 HOH D 19 681 681 HOH HOH . L 3 HOH D 20 699 699 HOH HOH . L 3 HOH D 21 702 702 HOH HOH . L 3 HOH D 22 703 703 HOH HOH . L 3 HOH D 23 710 710 HOH HOH . L 3 HOH D 24 713 713 HOH HOH . L 3 HOH D 25 715 715 HOH HOH . L 3 HOH D 26 724 724 HOH HOH . L 3 HOH D 27 725 725 HOH HOH . L 3 HOH D 28 738 738 HOH HOH . L 3 HOH D 29 739 739 HOH HOH . L 3 HOH D 30 740 740 HOH HOH . L 3 HOH D 31 743 743 HOH HOH . L 3 HOH D 32 744 744 HOH HOH . L 3 HOH D 33 746 746 HOH HOH . L 3 HOH D 34 747 747 HOH HOH . L 3 HOH D 35 749 749 HOH HOH . L 3 HOH D 36 757 757 HOH HOH . L 3 HOH D 37 758 758 HOH HOH . L 3 HOH D 38 759 759 HOH HOH . L 3 HOH D 39 760 760 HOH HOH . L 3 HOH D 40 761 761 HOH HOH . L 3 HOH D 41 763 763 HOH HOH . L 3 HOH D 42 764 764 HOH HOH . L 3 HOH D 43 765 765 HOH HOH . L 3 HOH D 44 767 767 HOH HOH . L 3 HOH D 45 768 768 HOH HOH . L 3 HOH D 46 769 769 HOH HOH . L 3 HOH D 47 785 785 HOH HOH . L 3 HOH D 48 803 803 HOH HOH . L 3 HOH D 49 808 808 HOH HOH . L 3 HOH D 50 817 817 HOH HOH . L 3 HOH D 51 825 825 HOH HOH . L 3 HOH D 52 835 835 HOH HOH . L 3 HOH D 53 836 836 HOH HOH . L 3 HOH D 54 837 837 HOH HOH . L 3 HOH D 55 839 839 HOH HOH . L 3 HOH D 56 840 840 HOH HOH . L 3 HOH D 57 843 843 HOH HOH . L 3 HOH D 58 846 846 HOH HOH . L 3 HOH D 59 847 847 HOH HOH . L 3 HOH D 60 849 849 HOH HOH . L 3 HOH D 61 851 851 HOH HOH . L 3 HOH D 62 852 852 HOH HOH . L 3 HOH D 63 853 853 HOH HOH . L 3 HOH D 64 854 854 HOH HOH . L 3 HOH D 65 855 855 HOH HOH . L 3 HOH D 66 856 856 HOH HOH . L 3 HOH D 67 857 857 HOH HOH . L 3 HOH D 68 858 858 HOH HOH . L 3 HOH D 69 859 859 HOH HOH . L 3 HOH D 70 860 860 HOH HOH . L 3 HOH D 71 869 869 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 26.296 49.707 35.036 1 49.28 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . E 2 26.539 48.174 34.61 1 49.28 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . E 2 25.411 50.146 36.014 1 49.28 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . E 2 24.523 49.202 36.35 1 49.28 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . E 2 25.683 51.285 36.312 1 49.28 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . E 2 26.412 52.657 36.324 1 49.28 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #