data_2H63 # _model_server_result.job_id DvqAJRYN8Z0QBC8u0zDi4g _model_server_result.datetime_utc '2024-11-22 19:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2H63 # _exptl.entry_id 2H63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2H63 _cell.length_a 90.787 _cell.length_b 92.747 _cell.length_c 147.755 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K 1 1 B,D,F,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 2H63 _atom_sites.fract_transf_matrix[1][1] 0.011015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 501 501 NAP NAP . F 2 NAP B 1 501 501 NAP NAP . G 2 NAP C 1 501 501 NAP NAP . H 2 NAP D 1 501 501 NAP NAP . I 3 HOH A 1 502 1 HOH HOH . I 3 HOH A 2 503 2 HOH HOH . I 3 HOH A 3 504 7 HOH HOH . I 3 HOH A 4 505 12 HOH HOH . I 3 HOH A 5 506 17 HOH HOH . I 3 HOH A 6 507 18 HOH HOH . I 3 HOH A 7 508 19 HOH HOH . I 3 HOH A 8 509 22 HOH HOH . J 3 HOH B 1 502 8 HOH HOH . J 3 HOH B 2 503 13 HOH HOH . J 3 HOH B 3 504 20 HOH HOH . J 3 HOH B 4 505 21 HOH HOH . K 3 HOH C 1 502 6 HOH HOH . K 3 HOH C 2 503 9 HOH HOH . K 3 HOH C 3 504 11 HOH HOH . K 3 HOH C 4 505 14 HOH HOH . K 3 HOH C 5 506 16 HOH HOH . L 3 HOH D 1 502 3 HOH HOH . L 3 HOH D 2 503 4 HOH HOH . L 3 HOH D 3 504 5 HOH HOH . L 3 HOH D 4 505 10 HOH HOH . L 3 HOH D 5 506 15 HOH HOH . L 3 HOH D 6 507 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 5.086 1.74 -24.484 1 53.91 ? PA NAP 501 A 1 HETATM 2 O O1A NAP . . . E 2 4.818 0.647 -25.44 1 55.36 ? O1A NAP 501 A 1 HETATM 3 O O2A NAP . . . E 2 4.199 1.901 -23.343 1 51.96 ? O2A NAP 501 A 1 HETATM 4 O O5B NAP . . . E 2 5.167 3.159 -25.19 1 53.12 ? O5B NAP 501 A 1 HETATM 5 C C5B NAP . . . E 2 6.254 3.367 -26.057 1 53.88 ? C5B NAP 501 A 1 HETATM 6 C C4B NAP . . . E 2 5.91 4.484 -27.031 1 56.55 ? C4B NAP 501 A 1 HETATM 7 O O4B NAP . . . E 2 4.67 4.212 -27.693 1 58.56 ? O4B NAP 501 A 1 HETATM 8 C C3B NAP . . . E 2 5.658 5.845 -26.389 1 56.5 ? C3B NAP 501 A 1 HETATM 9 O O3B NAP . . . E 2 6.882 6.511 -26.083 1 54.02 ? O3B NAP 501 A 1 HETATM 10 C C2B NAP . . . E 2 4.873 6.572 -27.51 1 57.21 ? C2B NAP 501 A 1 HETATM 11 O O2B NAP . . . E 2 5.708 7.351 -28.322 1 52.39 ? O2B NAP 501 A 1 HETATM 12 C C1B NAP . . . E 2 4.34 5.45 -28.375 1 61.3 ? C1B NAP 501 A 1 HETATM 13 N N9A NAP . . . E 2 2.887 5.195 -28.444 1 63.53 ? N9A NAP 501 A 1 HETATM 14 C C8A NAP . . . E 2 2.216 4.952 -29.583 1 64.17 ? C8A NAP 501 A 1 HETATM 15 N N7A NAP . . . E 2 0.929 4.717 -29.318 1 65.12 ? N7A NAP 501 A 1 HETATM 16 C C5A NAP . . . E 2 0.788 4.791 -28 1 64.15 ? C5A NAP 501 A 1 HETATM 17 C C6A NAP . . . E 2 -0.309 4.635 -27.187 1 62.66 ? C6A NAP 501 A 1 HETATM 18 N N6A NAP . . . E 2 -1.473 4.361 -27.732 1 62.81 ? N6A NAP 501 A 1 HETATM 19 N N1A NAP . . . E 2 -0.147 4.777 -25.859 1 63.97 ? N1A NAP 501 A 1 HETATM 20 C C2A NAP . . . E 2 1.067 5.078 -25.365 1 63.73 ? C2A NAP 501 A 1 HETATM 21 N N3A NAP . . . E 2 2.153 5.249 -26.123 1 62.03 ? N3A NAP 501 A 1 HETATM 22 C C4A NAP . . . E 2 2.034 5.091 -27.438 1 63.39 ? C4A NAP 501 A 1 HETATM 23 O O3 NAP . . . E 2 6.634 1.461 -23.986 1 54.35 ? O3 NAP 501 A 1 HETATM 24 P PN NAP . . . E 2 7.03 1.369 -22.398 1 52.87 ? PN NAP 501 A 1 HETATM 25 O O1N NAP . . . E 2 6.458 0.127 -21.766 1 51.4 ? O1N NAP 501 A 1 HETATM 26 O O2N NAP . . . E 2 6.725 2.727 -21.856 1 48.19 ? O2N NAP 501 A 1 HETATM 27 O O5D NAP . . . E 2 8.579 1.122 -22.661 1 52.49 ? O5D NAP 501 A 1 HETATM 28 C C5D NAP . . . E 2 9.308 2.202 -23.2 1 53.25 ? C5D NAP 501 A 1 HETATM 29 C C4D NAP . . . E 2 10.798 2.048 -22.953 1 53.59 ? C4D NAP 501 A 1 HETATM 30 O O4D NAP . . . E 2 11.01 1.826 -21.551 1 54.25 ? O4D NAP 501 A 1 HETATM 31 C C3D NAP . . . E 2 11.252 0.811 -23.707 1 53.69 ? C3D NAP 501 A 1 HETATM 32 O O3D NAP . . . E 2 12.586 1.019 -24.21 1 55.16 ? O3D NAP 501 A 1 HETATM 33 C C2D NAP . . . E 2 11.269 -0.259 -22.637 1 54.79 ? C2D NAP 501 A 1 HETATM 34 O O2D NAP . . . E 2 12.314 -1.212 -22.914 1 52.43 ? O2D NAP 501 A 1 HETATM 35 C C1D NAP . . . E 2 11.669 0.564 -21.426 1 56.35 ? C1D NAP 501 A 1 HETATM 36 N N1N NAP . . . E 2 11.156 0.062 -20.147 1 57.22 ? N1N NAP 501 A 1 HETATM 37 C C2N NAP . . . E 2 9.82 0.217 -19.795 1 57.03 ? C2N NAP 501 A 1 HETATM 38 C C3N NAP . . . E 2 9.428 -0.265 -18.552 1 59.4 ? C3N NAP 501 A 1 HETATM 39 C C7N NAP . . . E 2 7.994 -0.137 -18.086 1 59.6 ? C7N NAP 501 A 1 HETATM 40 O O7N NAP . . . E 2 7.573 -0.855 -17.185 1 61.56 ? O7N NAP 501 A 1 HETATM 41 N N7N NAP . . . E 2 7.278 0.803 -18.687 1 62.42 ? N7N NAP 501 A 1 HETATM 42 C C4N NAP . . . E 2 10.322 -0.887 -17.676 1 58.18 ? C4N NAP 501 A 1 HETATM 43 C C5N NAP . . . E 2 11.642 -1.029 -18.041 1 58.46 ? C5N NAP 501 A 1 HETATM 44 C C6N NAP . . . E 2 12.063 -0.557 -19.277 1 58.35 ? C6N NAP 501 A 1 HETATM 45 P P2B NAP . . . E 2 5.079 8.804 -28.66 1 57.13 ? P2B NAP 501 A 1 HETATM 46 O O1X NAP . . . E 2 3.918 8.276 -29.634 1 58.86 ? O1X NAP 501 A 1 HETATM 47 O O2X NAP . . . E 2 4.38 9.363 -27.303 1 52.44 ? O2X NAP 501 A 1 HETATM 48 O O3X NAP . . . E 2 5.939 9.824 -29.327 1 52.02 ? O3X NAP 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #