data_2H63
#
_model_server_result.job_id            M7L8e_TGPitSz8LHSHyARA 
_model_server_result.datetime_utc      '2024-11-05 15:27:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2h63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    2H63 
#
_exptl.entry_id    2H63 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2H63 
_cell.length_a            90.787 
_cell.length_b            92.747 
_cell.length_c            147.755 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2H63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     2H63 
_atom_sites.fract_transf_matrix[1][1]    0.011015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010782 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 501 501 NAP NAP . 
F 2 NAP B 1 501 501 NAP NAP . 
G 2 NAP C 1 501 501 NAP NAP . 
H 2 NAP D 1 501 501 NAP NAP . 
I 3 HOH A 1 502 1 HOH HOH . 
I 3 HOH A 2 503 2 HOH HOH . 
I 3 HOH A 3 504 7 HOH HOH . 
I 3 HOH A 4 505 12 HOH HOH . 
I 3 HOH A 5 506 17 HOH HOH . 
I 3 HOH A 6 507 18 HOH HOH . 
I 3 HOH A 7 508 19 HOH HOH . 
I 3 HOH A 8 509 22 HOH HOH . 
J 3 HOH B 1 502 8 HOH HOH . 
J 3 HOH B 2 503 13 HOH HOH . 
J 3 HOH B 3 504 20 HOH HOH . 
J 3 HOH B 4 505 21 HOH HOH . 
K 3 HOH C 1 502 6 HOH HOH . 
K 3 HOH C 2 503 9 HOH HOH . 
K 3 HOH C 3 504 11 HOH HOH . 
K 3 HOH C 4 505 14 HOH HOH . 
K 3 HOH C 5 506 16 HOH HOH . 
L 3 HOH D 1 502 3 HOH HOH . 
L 3 HOH D 2 503 4 HOH HOH . 
L 3 HOH D 3 504 5 HOH HOH . 
L 3 HOH D 4 505 10 HOH HOH . 
L 3 HOH D 5 506 15 HOH HOH . 
L 3 HOH D 6 507 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . F 2 -23.478 -20.561 -12.959 1 64.88 ? PA NAP 501 B 1 
HETATM 2 O O1A NAP . . . F 2 -24.218 -21.012 -11.774 1 65.88 ? O1A NAP 501 B 1 
HETATM 3 O O2A NAP . . . F 2 -23.176 -21.5 -14.06 1 61.5 ? O2A NAP 501 B 1 
HETATM 4 O O5B NAP . . . F 2 -22.098 -19.827 -12.4 1 68.4 ? O5B NAP 501 B 1 
HETATM 5 C C5B NAP . . . F 2 -22.106 -19.042 -11.145 1 71.12 ? C5B NAP 501 B 1 
HETATM 6 C C4B NAP . . . F 2 -20.786 -19.158 -10.366 1 74.69 ? C4B NAP 501 B 1 
HETATM 7 O O4B NAP . . . F 2 -20.89 -20.437 -9.735 1 77.92 ? O4B NAP 501 B 1 
HETATM 8 C C3B NAP . . . F 2 -19.51 -19.319 -11.214 1 75.47 ? C3B NAP 501 B 1 
HETATM 9 O O3B NAP . . . F 2 -18.902 -18.024 -11.419 1 72.66 ? O3B NAP 501 B 1 
HETATM 10 C C2B NAP . . . F 2 -18.63 -20.23 -10.316 1 77.19 ? C2B NAP 501 B 1 
HETATM 11 O O2B NAP . . . F 2 -17.678 -19.428 -9.587 1 75.18 ? O2B NAP 501 B 1 
HETATM 12 C C1B NAP . . . F 2 -19.591 -20.777 -9.266 1 79.43 ? C1B NAP 501 B 1 
HETATM 13 N N9A NAP . . . F 2 -19.628 -22.236 -9.075 1 81.07 ? N9A NAP 501 B 1 
HETATM 14 C C8A NAP . . . F 2 -19.765 -22.816 -7.877 1 82.24 ? C8A NAP 501 B 1 
HETATM 15 N N7A NAP . . . F 2 -19.795 -24.141 -8.007 1 81.42 ? N7A NAP 501 B 1 
HETATM 16 C C5A NAP . . . F 2 -19.684 -24.408 -9.29 1 80.45 ? C5A NAP 501 B 1 
HETATM 17 C C6A NAP . . . F 2 -19.649 -25.601 -9.977 1 80.56 ? C6A NAP 501 B 1 
HETATM 18 N N6A NAP . . . F 2 -19.728 -26.737 -9.301 1 81.65 ? N6A NAP 501 B 1 
HETATM 19 N N1A NAP . . . F 2 -19.525 -25.593 -11.31 1 81.05 ? N1A NAP 501 B 1 
HETATM 20 C C2A NAP . . . F 2 -19.431 -24.421 -11.935 1 82.08 ? C2A NAP 501 B 1 
HETATM 21 N N3A NAP . . . F 2 -19.456 -23.241 -11.293 1 82.06 ? N3A NAP 501 B 1 
HETATM 22 C C4A NAP . . . F 2 -19.587 -23.206 -9.971 1 80.65 ? C4A NAP 501 B 1 
HETATM 23 O O3 NAP . . . F 2 -24.311 -19.273 -13.491 1 66.36 ? O3 NAP 501 B 1 
HETATM 24 P PN NAP . . . F 2 -24.161 -18.676 -15.004 1 62.46 ? PN NAP 501 B 1 
HETATM 25 O O1N NAP . . . F 2 -25.156 -19.467 -15.771 1 63.56 ? O1N NAP 501 B 1 
HETATM 26 O O2N NAP . . . F 2 -22.765 -18.616 -15.457 1 63.41 ? O2N NAP 501 B 1 
HETATM 27 O O5D NAP . . . F 2 -24.639 -17.2 -14.732 1 64.36 ? O5D NAP 501 B 1 
HETATM 28 C C5D NAP . . . F 2 -23.931 -16.398 -13.842 1 66.01 ? C5D NAP 501 B 1 
HETATM 29 C C4D NAP . . . F 2 -24.181 -14.905 -14.131 1 67.48 ? C4D NAP 501 B 1 
HETATM 30 O O4D NAP . . . F 2 -24.304 -14.63 -15.546 1 66.66 ? O4D NAP 501 B 1 
HETATM 31 C C3D NAP . . . F 2 -25.508 -14.509 -13.462 1 67.27 ? C3D NAP 501 B 1 
HETATM 32 O O3D NAP . . . F 2 -25.396 -13.18 -12.995 1 67.97 ? O3D NAP 501 B 1 
HETATM 33 C C2D NAP . . . F 2 -26.488 -14.517 -14.595 1 67.77 ? C2D NAP 501 B 1 
HETATM 34 O O2D NAP . . . F 2 -27.535 -13.588 -14.297 1 66.58 ? O2D NAP 501 B 1 
HETATM 35 C C1D NAP . . . F 2 -25.581 -13.97 -15.693 1 68.6 ? C1D NAP 501 B 1 
HETATM 36 N N1N NAP . . . F 2 -26.176 -14.386 -16.966 1 69.3 ? N1N NAP 501 B 1 
HETATM 37 C C2N NAP . . . F 2 -25.949 -15.652 -17.509 1 69.41 ? C2N NAP 501 B 1 
HETATM 38 C C3N NAP . . . F 2 -26.557 -15.954 -18.719 1 69.46 ? C3N NAP 501 B 1 
HETATM 39 C C7N NAP . . . F 2 -26.366 -17.267 -19.359 1 68.08 ? C7N NAP 501 B 1 
HETATM 40 O O7N NAP . . . F 2 -26.264 -17.326 -20.581 1 66.59 ? O7N NAP 501 B 1 
HETATM 41 N N7N NAP . . . F 2 -26.355 -18.289 -18.524 1 67.84 ? N7N NAP 501 B 1 
HETATM 42 C C4N NAP . . . F 2 -27.364 -15.058 -19.399 1 69.85 ? C4N NAP 501 B 1 
HETATM 43 C C5N NAP . . . F 2 -27.589 -13.813 -18.856 1 70.03 ? C5N NAP 501 B 1 
HETATM 44 C C6N NAP . . . F 2 -26.996 -13.478 -17.644 1 70.29 ? C6N NAP 501 B 1 
HETATM 45 P P2B NAP . . . F 2 -16.393 -20.053 -8.915 1 70.61 ? P2B NAP 501 B 1 
HETATM 46 O O1X NAP . . . F 2 -16.949 -21.285 -7.983 1 68.74 ? O1X NAP 501 B 1 
HETATM 47 O O2X NAP . . . F 2 -15.613 -20.666 -10.159 1 71.44 ? O2X NAP 501 B 1 
HETATM 48 O O3X NAP . . . F 2 -15.596 -18.977 -8.342 1 69.62 ? O3X NAP 501 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#