data_2H63
#
_model_server_result.job_id            hvAHrFXVC-7FeuaMyyp3Ew 
_model_server_result.datetime_utc      '2024-11-05 15:21:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2h63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    2H63 
#
_exptl.entry_id    2H63 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2H63 
_cell.length_a            90.787 
_cell.length_b            92.747 
_cell.length_c            147.755 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2H63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     2H63 
_atom_sites.fract_transf_matrix[1][1]    0.011015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010782 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 501 501 NAP NAP . 
F 2 NAP B 1 501 501 NAP NAP . 
G 2 NAP C 1 501 501 NAP NAP . 
H 2 NAP D 1 501 501 NAP NAP . 
I 3 HOH A 1 502 1 HOH HOH . 
I 3 HOH A 2 503 2 HOH HOH . 
I 3 HOH A 3 504 7 HOH HOH . 
I 3 HOH A 4 505 12 HOH HOH . 
I 3 HOH A 5 506 17 HOH HOH . 
I 3 HOH A 6 507 18 HOH HOH . 
I 3 HOH A 7 508 19 HOH HOH . 
I 3 HOH A 8 509 22 HOH HOH . 
J 3 HOH B 1 502 8 HOH HOH . 
J 3 HOH B 2 503 13 HOH HOH . 
J 3 HOH B 3 504 20 HOH HOH . 
J 3 HOH B 4 505 21 HOH HOH . 
K 3 HOH C 1 502 6 HOH HOH . 
K 3 HOH C 2 503 9 HOH HOH . 
K 3 HOH C 3 504 11 HOH HOH . 
K 3 HOH C 4 505 14 HOH HOH . 
K 3 HOH C 5 506 16 HOH HOH . 
L 3 HOH D 1 502 3 HOH HOH . 
L 3 HOH D 2 503 4 HOH HOH . 
L 3 HOH D 3 504 5 HOH HOH . 
L 3 HOH D 4 505 10 HOH HOH . 
L 3 HOH D 5 506 15 HOH HOH . 
L 3 HOH D 6 507 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 2 -21.98 -14.113 -61.706 1 64.81 ? PA NAP 501 D 1 
HETATM 2 O O1A NAP . . . H 2 -21.127 -14.032 -62.917 1 61.92 ? O1A NAP 501 D 1 
HETATM 3 O O2A NAP . . . H 2 -22.115 -15.345 -60.88 1 61.5 ? O2A NAP 501 D 1 
HETATM 4 O O5B NAP . . . H 2 -23.531 -13.739 -62.166 1 62.92 ? O5B NAP 501 D 1 
HETATM 5 C C5B NAP . . . H 2 -23.698 -12.816 -63.246 1 65.36 ? C5B NAP 501 D 1 
HETATM 6 C C4B NAP . . . H 2 -24.787 -13.189 -64.251 1 67.81 ? C4B NAP 501 D 1 
HETATM 7 O O4B NAP . . . H 2 -24.301 -14.067 -65.227 1 69.94 ? O4B NAP 501 D 1 
HETATM 8 C C3B NAP . . . H 2 -25.839 -14.017 -63.595 1 70.23 ? C3B NAP 501 D 1 
HETATM 9 O O3B NAP . . . H 2 -26.753 -13.094 -62.983 1 72.56 ? O3B NAP 501 D 1 
HETATM 10 C C2B NAP . . . H 2 -26.456 -14.784 -64.786 1 71.01 ? C2B NAP 501 D 1 
HETATM 11 O O2B NAP . . . H 2 -27.625 -14.132 -65.23 1 69.21 ? O2B NAP 501 D 1 
HETATM 12 C C1B NAP . . . H 2 -25.438 -14.608 -65.887 1 73.02 ? C1B NAP 501 D 1 
HETATM 13 N N9A NAP . . . H 2 -24.814 -15.855 -66.303 1 74.79 ? N9A NAP 501 D 1 
HETATM 14 C C8A NAP . . . H 2 -24.396 -16.162 -67.534 1 75.36 ? C8A NAP 501 D 1 
HETATM 15 N N7A NAP . . . H 2 -23.838 -17.374 -67.527 1 75.32 ? N7A NAP 501 D 1 
HETATM 16 C C5A NAP . . . H 2 -23.894 -17.833 -66.286 1 75.79 ? C5A NAP 501 D 1 
HETATM 17 C C6A NAP . . . H 2 -23.464 -18.996 -65.659 1 74.91 ? C6A NAP 501 D 1 
HETATM 18 N N6A NAP . . . H 2 -22.894 -19.93 -66.355 1 75.48 ? N6A NAP 501 D 1 
HETATM 19 N N1A NAP . . . H 2 -23.648 -19.185 -64.348 1 74.98 ? N1A NAP 501 D 1 
HETATM 20 C C2A NAP . . . H 2 -24.246 -18.235 -63.632 1 76.19 ? C2A NAP 501 D 1 
HETATM 21 N N3A NAP . . . H 2 -24.662 -17.089 -64.189 1 76.78 ? N3A NAP 501 D 1 
HETATM 22 C C4A NAP . . . H 2 -24.5 -16.862 -65.506 1 75.79 ? C4A NAP 501 D 1 
HETATM 23 O O3 NAP . . . H 2 -21.33 -12.877 -60.819 1 63.53 ? O3 NAP 501 D 1 
HETATM 24 P PN NAP . . . H 2 -21.783 -12.597 -59.304 1 62.74 ? PN NAP 501 D 1 
HETATM 25 O O1N NAP . . . H 2 -20.659 -13.07 -58.46 1 65.24 ? O1N NAP 501 D 1 
HETATM 26 O O2N NAP . . . H 2 -23.17 -13.124 -59.038 1 58.63 ? O2N NAP 501 D 1 
HETATM 27 O O5D NAP . . . H 2 -21.72 -10.995 -59.349 1 61.84 ? O5D NAP 501 D 1 
HETATM 28 C C5D NAP . . . H 2 -22.885 -10.304 -59.797 1 64.19 ? C5D NAP 501 D 1 
HETATM 29 C C4D NAP . . . H 2 -23.01 -8.884 -59.237 1 64.74 ? C4D NAP 501 D 1 
HETATM 30 O O4D NAP . . . H 2 -22.792 -9.003 -57.838 1 66.41 ? O4D NAP 501 D 1 
HETATM 31 C C3D NAP . . . H 2 -21.845 -8.107 -59.814 1 65.15 ? C3D NAP 501 D 1 
HETATM 32 O O3D NAP . . . H 2 -22.296 -6.798 -60.045 1 62.89 ? O3D NAP 501 D 1 
HETATM 33 C C2D NAP . . . H 2 -20.823 -8.171 -58.695 1 66.53 ? C2D NAP 501 D 1 
HETATM 34 O O2D NAP . . . H 2 -20.032 -7.011 -58.698 1 65.27 ? O2D NAP 501 D 1 
HETATM 35 C C1D NAP . . . H 2 -21.736 -8.127 -57.5 1 69.92 ? C1D NAP 501 D 1 
HETATM 36 N N1N NAP . . . H 2 -21.115 -8.691 -56.292 1 72.62 ? N1N NAP 501 D 1 
HETATM 37 C C2N NAP . . . H 2 -20.788 -10.065 -56.201 1 73.11 ? C2N NAP 501 D 1 
HETATM 38 C C3N NAP . . . H 2 -20.213 -10.557 -55.025 1 73.81 ? C3N NAP 501 D 1 
HETATM 39 C C7N NAP . . . H 2 -19.838 -12.049 -54.876 1 76.5 ? C7N NAP 501 D 1 
HETATM 40 O O7N NAP . . . H 2 -18.715 -12.371 -54.436 1 81.08 ? O7N NAP 501 D 1 
HETATM 41 N N7N NAP . . . H 2 -20.791 -12.934 -55.259 1 77.54 ? N7N NAP 501 D 1 
HETATM 42 C C4N NAP . . . H 2 -19.946 -9.706 -53.968 1 71.36 ? C4N NAP 501 D 1 
HETATM 43 C C5N NAP . . . H 2 -20.265 -8.356 -54.06 1 72.54 ? C5N NAP 501 D 1 
HETATM 44 C C6N NAP . . . H 2 -20.856 -7.832 -55.206 1 73.88 ? C6N NAP 501 D 1 
HETATM 45 P P2B NAP . . . H 2 -28.851 -14.878 -65.921 1 68.15 ? P2B NAP 501 D 1 
HETATM 46 O O1X NAP . . . H 2 -28.104 -15.462 -67.293 1 69.83 ? O1X NAP 501 D 1 
HETATM 47 O O2X NAP . . . H 2 -29.427 -16.048 -64.933 1 63.2 ? O2X NAP 501 D 1 
HETATM 48 O O3X NAP . . . H 2 -29.92 -13.915 -66.22 1 69.38 ? O3X NAP 501 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           48 
#