data_2H6I # _model_server_result.job_id JByjUBKMVmaeGLlszXdtZQ _model_server_result.datetime_utc '2024-11-05 23:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2010}' # _entry.id 2H6I # _exptl.entry_id 2H6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.484 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERAN-8-YL GERAN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2H6I _cell.length_a 178.126 _cell.length_b 178.126 _cell.length_c 64.904 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 C 1 GLC S 3010 SUC 4 n D FRU 2 C 2 FRU S 3010 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG CYS 8 P CYS 2006 1_555 F C1 GER . P GER 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale2 D C1 GLC . C GLC 1 1_555 D O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 sing metalc ? metalc1 B OD2 ASP 297 B ASP 797 1_555 E ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 B SG CYS 299 B CYS 799 1_555 E ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 B NE2 HIS 362 B HIS 862 1_555 E ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 E ZN ZN . B ZN 1001 1_555 C SG CYS 8 P CYS 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'C20 H34' _chem_comp.formula_weight 274.484 _chem_comp.id GER _chem_comp.mon_nstd_flag . _chem_comp.name 'GERAN-8-YL GERAN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GER sing 107 n n C1 H11 GER sing 108 n n C1 H12 GER sing 109 n n C1 H13 GER sing 110 n n C2 C3 GER doub 111 e n C2 H21 GER sing 112 n n C3 C4 GER sing 113 n n C3 C5 GER sing 114 n n C4 H41 GER sing 115 n n C4 H42 GER sing 116 n n C4 H43 GER sing 117 n n C5 C6 GER sing 118 n n C5 H51 GER sing 119 n n C5 H52 GER sing 120 n n C6 C7 GER sing 121 n n C6 H61 GER sing 122 n n C6 H62 GER sing 123 n n C7 C8 GER doub 124 e n C7 H71 GER sing 125 n n C8 C9 GER sing 126 n n C8 C10 GER sing 127 n n C9 H91 GER sing 128 n n C9 H92 GER sing 129 n n C9 H93 GER sing 130 n n C10 C11 GER sing 131 n n C10 H101 GER sing 132 n n C10 H102 GER sing 133 n n C11 C12 GER sing 134 n n C11 H111 GER sing 135 n n C11 H112 GER sing 136 n n C12 C13 GER doub 137 e n C12 H121 GER sing 138 n n C13 C14 GER sing 139 n n C13 C15 GER sing 140 n n C14 H141 GER sing 141 n n C14 H142 GER sing 142 n n C14 H143 GER sing 143 n n C15 C16 GER sing 144 n n C15 H151 GER sing 145 n n C15 H152 GER sing 146 n n C16 C17 GER sing 147 n n C16 H161 GER sing 148 n n C16 H162 GER sing 149 n n C17 C18 GER doub 150 n n C17 H171 GER sing 151 n n C18 C19 GER sing 152 n n C18 C20 GER sing 153 n n C19 H191 GER sing 154 n n C19 H192 GER sing 155 n n C19 H193 GER sing 156 n n C20 H201 GER sing 157 n n C20 H202 GER sing 158 n n C20 H203 GER sing 159 n n # _atom_sites.entry_id 2H6I _atom_sites.fract_transf_matrix[1][1] 0.005614 _atom_sites.fract_transf_matrix[1][2] 0.003241 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN B 1 1001 1001 ZN ZN2 . F 6 GER P 1 2010 2006 GER GCS . G 7 HOH A 1 1028 1028 HOH WAT . G 7 HOH A 2 1112 1112 HOH WAT . G 7 HOH A 3 1171 1171 HOH WAT . G 7 HOH A 4 1196 1196 HOH WAT . G 7 HOH A 5 1211 1211 HOH WAT . G 7 HOH A 6 1272 1272 HOH WAT . G 7 HOH A 7 1360 1360 HOH WAT . G 7 HOH A 8 1374 1374 HOH WAT . G 7 HOH A 9 1475 1475 HOH WAT . G 7 HOH A 10 1482 1482 HOH WAT . G 7 HOH A 11 1675 1675 HOH WAT . G 7 HOH A 12 1678 1678 HOH WAT . G 7 HOH A 13 1704 1704 HOH WAT . G 7 HOH A 14 1883 1883 HOH WAT . G 7 HOH A 15 1908 1908 HOH WAT . G 7 HOH A 16 1918 1918 HOH WAT . G 7 HOH A 17 1920 1920 HOH WAT . H 7 HOH B 1 1006 1006 HOH WAT . H 7 HOH B 2 1014 1014 HOH WAT . H 7 HOH B 3 1024 1024 HOH WAT . H 7 HOH B 4 1059 1059 HOH WAT . H 7 HOH B 5 1168 1168 HOH WAT . H 7 HOH B 6 1220 1220 HOH WAT . H 7 HOH B 7 1309 1309 HOH WAT . H 7 HOH B 8 1373 1373 HOH WAT . H 7 HOH B 9 1401 1401 HOH WAT . H 7 HOH B 10 1452 1452 HOH WAT . H 7 HOH B 11 1492 1492 HOH WAT . H 7 HOH B 12 1528 1528 HOH WAT . H 7 HOH B 13 1589 1589 HOH WAT . H 7 HOH B 14 1693 1693 HOH WAT . H 7 HOH B 15 1804 1804 HOH WAT . H 7 HOH B 16 1817 1817 HOH WAT . H 7 HOH B 17 1822 1822 HOH WAT . H 7 HOH B 18 1864 1864 HOH WAT . H 7 HOH B 19 1872 1872 HOH WAT . H 7 HOH B 20 1876 1876 HOH WAT . H 7 HOH B 21 1880 1880 HOH WAT . H 7 HOH B 22 1888 1888 HOH WAT . H 7 HOH B 23 1894 1894 HOH WAT . H 7 HOH B 24 1943 1943 HOH WAT . I 7 HOH P 1 1163 1163 HOH WAT . I 7 HOH P 2 1697 1697 HOH WAT . I 7 HOH P 3 1885 1885 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GER . . . F 6 20.519 132.581 2.751 1 55.49 ? C1 GER 2010 P 1 HETATM 2 C C2 GER . . . F 6 19.752 131.936 1.606 1 54.54 ? C2 GER 2010 P 1 HETATM 3 C C3 GER . . . F 6 20.233 131.79 0.329 1 53.79 ? C3 GER 2010 P 1 HETATM 4 C C4 GER . . . F 6 21.604 132.273 -0.106 1 54.49 ? C4 GER 2010 P 1 HETATM 5 C C5 GER . . . F 6 19.43 131.155 -0.79 1 52.66 ? C5 GER 2010 P 1 HETATM 6 C C6 GER . . . F 6 19.557 129.622 -0.981 1 75.82 ? C6 GER 2010 P 1 HETATM 7 C C7 GER . . . F 6 18.286 129.038 -1.581 1 74.77 ? C7 GER 2010 P 1 HETATM 8 C C8 GER . . . F 6 18.064 128.735 -2.883 1 74.55 ? C8 GER 2010 P 1 HETATM 9 C C9 GER . . . F 6 19.098 128.93 -3.984 1 72.99 ? C9 GER 2010 P 1 HETATM 10 C C10 GER . . . F 6 16.72 128.19 -3.323 1 73.42 ? C10 GER 2010 P 1 HETATM 11 C C11 GER . . . F 6 16.242 128.675 -4.7 1 71.91 ? C11 GER 2010 P 1 HETATM 12 C C12 GER . . . F 6 14.882 128.149 -5.057 1 72.23 ? C12 GER 2010 P 1 HETATM 13 C C13 GER . . . F 6 14.2 128.409 -6.212 1 72.25 ? C13 GER 2010 P 1 HETATM 14 C C14 GER . . . F 6 14.696 129.269 -7.338 1 71.06 ? C14 GER 2010 P 1 HETATM 15 C C15 GER . . . F 6 12.819 127.88 -6.457 1 69.13 ? C15 GER 2010 P 1 HETATM 16 C C16 GER . . . F 6 11.897 128.478 -5.444 1 69.7 ? C16 GER 2010 P 1 HETATM 17 C C17 GER . . . F 6 11.355 129.811 -5.878 1 72.09 ? C17 GER 2010 P 1 HETATM 18 C C18 GER . . . F 6 10.542 130.602 -5.138 1 72.72 ? C18 GER 2010 P 1 HETATM 19 C C19 GER . . . F 6 10.08 130.287 -3.736 1 73.59 ? C19 GER 2010 P 1 HETATM 20 C C20 GER . . . F 6 9.968 131.871 -5.679 1 74.1 ? C20 GER 2010 P 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #