data_2H6Y
#
_model_server_result.job_id            DXK_cYhMeTDx7YO8xMaTYA 
_model_server_result.datetime_utc      '2024-10-12 14:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2h6y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    2H6Y 
#
_exptl.entry_id    2H6Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2H6Y 
_cell.length_a            101.608 
_cell.length_b            101.608 
_cell.length_c            38.658 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2H6Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 B SG CYS 32 B CYS 32 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     2H6Y 
_atom_sites.fract_transf_matrix[1][1]    0.00984 
_atom_sites.fract_transf_matrix[1][2]    0.00568 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD A 1 501 501 MPD MPD . 
D 2 MPD A 1 502 502 MPD MPD . 
E 3 HOH A 1 503 1 HOH HOH . 
E 3 HOH A 2 504 3 HOH HOH . 
E 3 HOH A 3 505 5 HOH HOH . 
E 3 HOH A 4 506 6 HOH HOH . 
E 3 HOH A 5 507 7 HOH HOH . 
E 3 HOH A 6 508 9 HOH HOH . 
E 3 HOH A 7 509 11 HOH HOH . 
E 3 HOH A 8 510 16 HOH HOH . 
E 3 HOH A 9 511 17 HOH HOH . 
E 3 HOH A 10 512 18 HOH HOH . 
E 3 HOH A 11 513 21 HOH HOH . 
E 3 HOH A 12 514 22 HOH HOH . 
E 3 HOH A 13 515 23 HOH HOH . 
E 3 HOH A 14 516 25 HOH HOH . 
E 3 HOH A 15 517 26 HOH HOH . 
E 3 HOH A 16 518 27 HOH HOH . 
E 3 HOH A 17 519 28 HOH HOH . 
E 3 HOH A 18 520 29 HOH HOH . 
E 3 HOH A 19 521 30 HOH HOH . 
E 3 HOH A 20 522 31 HOH HOH . 
E 3 HOH A 21 523 32 HOH HOH . 
E 3 HOH A 22 524 34 HOH HOH . 
E 3 HOH A 23 525 35 HOH HOH . 
E 3 HOH A 24 526 36 HOH HOH . 
E 3 HOH A 25 527 40 HOH HOH . 
E 3 HOH A 26 528 42 HOH HOH . 
E 3 HOH A 27 529 44 HOH HOH . 
E 3 HOH A 28 530 45 HOH HOH . 
E 3 HOH A 29 531 47 HOH HOH . 
E 3 HOH A 30 532 51 HOH HOH . 
E 3 HOH A 31 533 53 HOH HOH . 
E 3 HOH A 32 534 54 HOH HOH . 
E 3 HOH A 33 535 56 HOH HOH . 
E 3 HOH A 34 536 57 HOH HOH . 
E 3 HOH A 35 537 58 HOH HOH . 
E 3 HOH A 36 538 59 HOH HOH . 
E 3 HOH A 37 539 60 HOH HOH . 
E 3 HOH A 38 540 61 HOH HOH . 
E 3 HOH A 39 541 62 HOH HOH . 
E 3 HOH A 40 542 63 HOH HOH . 
E 3 HOH A 41 543 65 HOH HOH . 
E 3 HOH A 42 544 66 HOH HOH . 
E 3 HOH A 43 545 68 HOH HOH . 
E 3 HOH A 44 546 69 HOH HOH . 
E 3 HOH A 45 547 70 HOH HOH . 
E 3 HOH A 46 548 73 HOH HOH . 
E 3 HOH A 47 549 74 HOH HOH . 
E 3 HOH A 48 550 77 HOH HOH . 
E 3 HOH A 49 551 78 HOH HOH . 
E 3 HOH A 50 552 79 HOH HOH . 
E 3 HOH A 51 553 81 HOH HOH . 
E 3 HOH A 52 554 83 HOH HOH . 
E 3 HOH A 53 555 84 HOH HOH . 
E 3 HOH A 54 556 87 HOH HOH . 
F 3 HOH B 1 109 2 HOH HOH . 
F 3 HOH B 2 110 4 HOH HOH . 
F 3 HOH B 3 111 8 HOH HOH . 
F 3 HOH B 4 112 10 HOH HOH . 
F 3 HOH B 5 113 12 HOH HOH . 
F 3 HOH B 6 114 13 HOH HOH . 
F 3 HOH B 7 115 14 HOH HOH . 
F 3 HOH B 8 116 15 HOH HOH . 
F 3 HOH B 9 117 19 HOH HOH . 
F 3 HOH B 10 118 20 HOH HOH . 
F 3 HOH B 11 119 24 HOH HOH . 
F 3 HOH B 12 120 33 HOH HOH . 
F 3 HOH B 13 121 37 HOH HOH . 
F 3 HOH B 14 122 39 HOH HOH . 
F 3 HOH B 15 123 41 HOH HOH . 
F 3 HOH B 16 124 43 HOH HOH . 
F 3 HOH B 17 125 48 HOH HOH . 
F 3 HOH B 18 126 49 HOH HOH . 
F 3 HOH B 19 127 50 HOH HOH . 
F 3 HOH B 20 128 52 HOH HOH . 
F 3 HOH B 21 129 55 HOH HOH . 
F 3 HOH B 22 130 64 HOH HOH . 
F 3 HOH B 23 131 67 HOH HOH . 
F 3 HOH B 24 132 71 HOH HOH . 
F 3 HOH B 25 133 72 HOH HOH . 
F 3 HOH B 26 134 75 HOH HOH . 
F 3 HOH B 27 135 76 HOH HOH . 
F 3 HOH B 28 136 80 HOH HOH . 
F 3 HOH B 29 137 82 HOH HOH . 
F 3 HOH B 30 138 85 HOH HOH . 
F 3 HOH B 31 139 86 HOH HOH . 
F 3 HOH B 32 140 88 HOH HOH . 
F 3 HOH B 33 141 89 HOH HOH . 
F 3 HOH B 34 142 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 2 -4.975 21.053 23.841 1 32.67 ? C1 MPD 502 A 1 
HETATM 2 C C2 MPD . . . D 2 -4.671 21.419 25.29 1 33 ? C2 MPD 502 A 1 
HETATM 3 O O2 MPD . . . D 2 -3.561 22.346 25.313 1 31.93 ? O2 MPD 502 A 1 
HETATM 4 C CM MPD . . . D 2 -5.884 22.086 25.905 1 34.3 ? CM MPD 502 A 1 
HETATM 5 C C3 MPD . . . D 2 -4.322 20.197 26.135 1 34.31 ? C3 MPD 502 A 1 
HETATM 6 C C4 MPD . . . D 2 -4.664 20.413 27.611 1 35.16 ? C4 MPD 502 A 1 
HETATM 7 O O4 MPD . . . D 2 -4.95 19.17 28.201 1 36.37 ? O4 MPD 502 A 1 
HETATM 8 C C5 MPD . . . D 2 -3.535 21.095 28.374 1 35.4 ? C5 MPD 502 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#