data_2H77 # _model_server_result.job_id ueFsCURWLHMef9jfcsVCCQ _model_server_result.datetime_utc '2024-11-13 09:50:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2H77 # _exptl.entry_id 2H77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.973 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3'TRIIODOTHYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.09 _cell.angle_gamma 90 _cell.entry_id 2H77 _cell.length_a 117.569 _cell.length_b 80.626 _cell.length_c 62.614 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 45 A LYS 186 4_555 A CA CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale2 A C LYS 45 A LYS 186 4_555 A CB CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale3 A O LYS 45 A LYS 186 4_555 A CB CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale4 A C LYS 45 A LYS 186 4_555 A SG CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? covale ? covale5 A O LYS 45 A LYS 186 4_555 A SG CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 A N GLN 46 A GLN 187 4_555 A N CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale7 A N GLN 46 A GLN 187 4_555 A C CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale8 A CA GLN 46 A GLN 187 4_555 A C CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.544 ? covale ? covale9 A C GLN 46 A GLN 187 4_555 A O CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.994 ? covale ? covale10 A CA GLN 46 A GLN 187 4_555 A CB CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale11 A CA GLN 46 A GLN 187 4_555 A O CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.109 ? covale ? covale12 A N GLN 46 A GLN 187 4_555 A CB CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.275 ? covale ? covale13 A CB GLN 46 A GLN 187 4_555 A O CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.723 ? covale ? covale14 A N ARG 47 A ARG 188 4_555 A O CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale15 A CG ARG 48 A ARG 189 4_555 A CE2 CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? covale ? covale16 A CD ARG 48 A ARG 189 4_555 A CE2 CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale17 A C LEU 192 A LEU 333 1_555 A N CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 A C CAS 193 A CAS 334 1_555 A N VAL 194 A VAL 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale19 A C ALA 238 A ALA 379 1_555 A N CAS 239 A CAS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 A C CAS 239 A CAS 380 1_555 A N HIS 240 A HIS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale21 A C HIS 246 A HIS 387 1_555 A N CAS 247 A CAS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 A C CAS 247 A CAS 388 1_555 A N LYS 248 A LYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale23 A C GLU 250 A GLU 391 1_555 A N CAS 251 A CAS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale24 A C CAS 251 A CAS 392 1_555 A N PRO 252 A PRO 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? metalc ? metalc1 A O LYS 45 A LYS 186 4_555 A AS CAS 193 A CAS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? # _chem_comp.formula 'C15 H12 I3 N O4' _chem_comp.formula_weight 650.973 _chem_comp.id T3 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3'TRIIODOTHYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'T3;THYROID HORMONE;LIOTHYRONINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 T3 doub 311 n y C1 C11 T3 sing 312 n y C1 C13 T3 sing 313 n n C2 C4 T3 doub 314 n y C2 C12 T3 sing 315 n y C2 O2 T3 sing 316 n n C3 C5 T3 sing 317 n y C3 HC3 T3 sing 318 n n C4 C6 T3 sing 319 n y C4 HC4 T3 sing 320 n n C5 C7 T3 doub 321 n y C5 I1 T3 sing 322 n n C6 C8 T3 doub 323 n y C6 I2 T3 sing 324 n n C7 C9 T3 sing 325 n y C7 O2 T3 sing 326 n n C8 C10 T3 sing 327 n y C8 O1 T3 sing 328 n n C9 C11 T3 doub 329 n y C9 I3 T3 sing 330 n n C10 C12 T3 doub 331 n y C10 HC10 T3 sing 332 n n C11 HC11 T3 sing 333 n n C12 HC12 T3 sing 334 n n C13 CA T3 sing 335 n n C13 H131 T3 sing 336 n n C13 H132 T3 sing 337 n n CA C T3 sing 338 n n CA N T3 sing 339 n n CA HA T3 sing 340 n n C OXT T3 sing 341 n n C O T3 doub 342 n n N H2 T3 sing 343 n n N H T3 sing 344 n n O1 HO1 T3 sing 345 n n OXT HXT T3 sing 346 n n # _atom_sites.entry_id 2H77 _atom_sites.fract_transf_matrix[1][1] 0.008506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005128 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T3 A 1 1 1 T3 T3 . C 3 HOH A 1 411 1 HOH HOH . C 3 HOH A 2 412 2 HOH HOH . C 3 HOH A 3 413 3 HOH HOH . C 3 HOH A 4 414 4 HOH HOH . C 3 HOH A 5 415 5 HOH HOH . C 3 HOH A 6 416 6 HOH HOH . C 3 HOH A 7 417 7 HOH HOH . C 3 HOH A 8 418 8 HOH HOH . C 3 HOH A 9 419 9 HOH HOH . C 3 HOH A 10 420 10 HOH HOH . C 3 HOH A 11 421 11 HOH HOH . C 3 HOH A 12 422 12 HOH HOH . C 3 HOH A 13 423 13 HOH HOH . C 3 HOH A 14 424 14 HOH HOH . C 3 HOH A 15 425 15 HOH HOH . C 3 HOH A 16 426 16 HOH HOH . C 3 HOH A 17 427 17 HOH HOH . C 3 HOH A 18 428 18 HOH HOH . C 3 HOH A 19 429 19 HOH HOH . C 3 HOH A 20 430 20 HOH HOH . C 3 HOH A 21 431 21 HOH HOH . C 3 HOH A 22 432 22 HOH HOH . C 3 HOH A 23 433 23 HOH HOH . C 3 HOH A 24 434 24 HOH HOH . C 3 HOH A 25 435 25 HOH HOH . C 3 HOH A 26 436 26 HOH HOH . C 3 HOH A 27 437 27 HOH HOH . C 3 HOH A 28 438 28 HOH HOH . C 3 HOH A 29 439 29 HOH HOH . C 3 HOH A 30 440 30 HOH HOH . C 3 HOH A 31 441 31 HOH HOH . C 3 HOH A 32 442 32 HOH HOH . C 3 HOH A 33 443 33 HOH HOH . C 3 HOH A 34 444 34 HOH HOH . C 3 HOH A 35 445 35 HOH HOH . C 3 HOH A 36 446 36 HOH HOH . C 3 HOH A 37 447 37 HOH HOH . C 3 HOH A 38 448 38 HOH HOH . C 3 HOH A 39 449 39 HOH HOH . C 3 HOH A 40 450 40 HOH HOH . C 3 HOH A 41 451 41 HOH HOH . C 3 HOH A 42 452 42 HOH HOH . C 3 HOH A 43 453 43 HOH HOH . C 3 HOH A 44 454 44 HOH HOH . C 3 HOH A 45 455 45 HOH HOH . C 3 HOH A 46 456 46 HOH HOH . C 3 HOH A 47 457 47 HOH HOH . C 3 HOH A 48 458 48 HOH HOH . C 3 HOH A 49 459 49 HOH HOH . C 3 HOH A 50 460 50 HOH HOH . C 3 HOH A 51 461 51 HOH HOH . C 3 HOH A 52 462 52 HOH HOH . C 3 HOH A 53 463 53 HOH HOH . C 3 HOH A 54 464 54 HOH HOH . C 3 HOH A 55 465 55 HOH HOH . C 3 HOH A 56 466 56 HOH HOH . C 3 HOH A 57 467 57 HOH HOH . C 3 HOH A 58 468 58 HOH HOH . C 3 HOH A 59 469 59 HOH HOH . C 3 HOH A 60 470 60 HOH HOH . C 3 HOH A 61 471 61 HOH HOH . C 3 HOH A 62 472 62 HOH HOH . C 3 HOH A 63 473 63 HOH HOH . C 3 HOH A 64 474 64 HOH HOH . C 3 HOH A 65 475 65 HOH HOH . C 3 HOH A 66 476 66 HOH HOH . C 3 HOH A 67 477 67 HOH HOH . C 3 HOH A 68 478 68 HOH HOH . C 3 HOH A 69 479 69 HOH HOH . C 3 HOH A 70 480 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T3 . . . B 2 21.311 4.072 5.543 1 52.81 ? C1 T3 1 A 1 HETATM 2 C C2 T3 . . . B 2 17.344 6.064 8.054 1 43.91 ? C2 T3 1 A 1 HETATM 3 C C3 T3 . . . B 2 20.783 3.905 6.673 1 53.5 ? C3 T3 1 A 1 HETATM 4 C C4 T3 . . . B 2 16.533 6.25 8.959 1 40.96 ? C4 T3 1 A 1 HETATM 5 C C5 T3 . . . B 2 19.781 4.009 7.424 1 52.4 ? C5 T3 1 A 1 HETATM 6 C C6 T3 . . . B 2 16.098 7.066 9.816 1 46.33 ? C6 T3 1 A 1 HETATM 7 C C7 T3 . . . B 2 18.736 4.583 6.685 1 51.52 ? C7 T3 1 A 1 HETATM 8 C C8 T3 . . . B 2 16.706 8.313 9.621 1 49.35 ? C8 T3 1 A 1 HETATM 9 C C9 T3 . . . B 2 18.988 4.926 5.307 1 53.87 ? C9 T3 1 A 1 HETATM 10 C C10 T3 . . . B 2 17.561 8.051 8.696 1 46.75 ? C10 T3 1 A 1 HETATM 11 C C11 T3 . . . B 2 20.306 4.642 4.77 1 52.69 ? C11 T3 1 A 1 HETATM 12 C C12 T3 . . . B 2 18.054 7.225 7.882 1 44.35 ? C12 T3 1 A 1 HETATM 13 C C13 T3 . . . B 2 22.687 3.698 5.078 1 48.08 ? C13 T3 1 A 1 HETATM 14 C CA T3 . . . B 2 22.757 3.421 3.584 1 44.34 ? CA T3 1 A 1 HETATM 15 C C T3 . . . B 2 24.163 3.014 3.224 1 43.53 ? C T3 1 A 1 HETATM 16 I I1 T3 . . . B 2 19.604 3.521 9.441 1 48.6 ? I1 T3 1 A 1 HETATM 17 I I2 T3 . . . B 2 14.653 6.812 11.273 1 48.77 ? I2 T3 1 A 1 HETATM 18 I I3 T3 . . . B 2 17.518 5.847 3.966 1 58.43 ? I3 T3 1 A 1 HETATM 19 N N T3 . . . B 2 21.771 2.499 3.028 1 41.57 ? N T3 1 A 1 HETATM 20 O O1 T3 . . . B 2 16.352 9.49 10.263 1 43.23 ? O1 T3 1 A 1 HETATM 21 O O2 T3 . . . B 2 17.531 4.821 7.328 1 50.96 ? O2 T3 1 A 1 HETATM 22 O OXT T3 . . . B 2 24.437 2.05 2.495 1 43.66 ? OXT T3 1 A 1 HETATM 23 O O T3 . . . B 2 25.057 3.683 3.704 1 44.34 ? O T3 1 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 23 #