data_2H7R # _model_server_result.job_id sMuUHT4PblxddigdOp7kiQ _model_server_result.datetime_utc '2024-10-16 10:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":416}' # _entry.id 2H7R # _exptl.entry_id 2H7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 83.112 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHYLIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.29 _cell.angle_gamma 90 _cell.entry_id 2H7R _cell.length_a 56.599 _cell.length_b 58.784 _cell.length_c 57.441 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 357 A CYS 357 1_555 B FE HEM . A HEM 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 B FE HEM . A HEM 415 1_555 C N3 1MZ . A 1MZ 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? # _chem_comp.formula 'C4 H7 N2 1' _chem_comp.formula_weight 83.112 _chem_comp.id 1MZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHYLIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 1MZ sing 1 n y N1 C5 1MZ sing 2 n y N1 CM1 1MZ sing 3 n n C2 N3 1MZ doub 4 n y C2 H2 1MZ sing 5 n n N3 C4 1MZ sing 6 n y N3 HN3 1MZ sing 7 n n C4 C5 1MZ doub 8 n y C4 H4 1MZ sing 9 n n C5 H5 1MZ sing 10 n n CM1 HM11 1MZ sing 11 n n CM1 HM12 1MZ sing 12 n n CM1 HM13 1MZ sing 13 n n # _atom_sites.entry_id 2H7R _atom_sites.fract_transf_matrix[1][1] 0.017668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00483 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 415 1 HEM HEM . C 3 1MZ A 1 416 293 1MZ 1MZ . D 4 HOH A 1 417 2 HOH TIP . D 4 HOH A 2 418 3 HOH TIP . D 4 HOH A 3 419 5 HOH TIP . D 4 HOH A 4 420 7 HOH TIP . D 4 HOH A 5 421 8 HOH TIP . D 4 HOH A 6 422 9 HOH TIP . D 4 HOH A 7 423 11 HOH TIP . D 4 HOH A 8 424 12 HOH TIP . D 4 HOH A 9 425 13 HOH TIP . D 4 HOH A 10 426 14 HOH TIP . D 4 HOH A 11 427 15 HOH TIP . D 4 HOH A 12 428 16 HOH TIP . D 4 HOH A 13 429 17 HOH TIP . D 4 HOH A 14 430 18 HOH TIP . D 4 HOH A 15 431 19 HOH TIP . D 4 HOH A 16 432 21 HOH TIP . D 4 HOH A 17 433 22 HOH TIP . D 4 HOH A 18 434 23 HOH TIP . D 4 HOH A 19 435 24 HOH TIP . D 4 HOH A 20 436 25 HOH TIP . D 4 HOH A 21 437 26 HOH TIP . D 4 HOH A 22 438 27 HOH TIP . D 4 HOH A 23 439 28 HOH TIP . D 4 HOH A 24 440 29 HOH TIP . D 4 HOH A 25 441 30 HOH TIP . D 4 HOH A 26 442 31 HOH TIP . D 4 HOH A 27 443 32 HOH TIP . D 4 HOH A 28 444 33 HOH TIP . D 4 HOH A 29 445 37 HOH TIP . D 4 HOH A 30 446 38 HOH TIP . D 4 HOH A 31 447 39 HOH TIP . D 4 HOH A 32 448 40 HOH TIP . D 4 HOH A 33 449 41 HOH TIP . D 4 HOH A 34 450 42 HOH TIP . D 4 HOH A 35 451 43 HOH TIP . D 4 HOH A 36 452 44 HOH TIP . D 4 HOH A 37 453 45 HOH TIP . D 4 HOH A 38 454 47 HOH TIP . D 4 HOH A 39 455 48 HOH TIP . D 4 HOH A 40 456 49 HOH TIP . D 4 HOH A 41 457 51 HOH TIP . D 4 HOH A 42 458 54 HOH TIP . D 4 HOH A 43 459 55 HOH TIP . D 4 HOH A 44 460 56 HOH TIP . D 4 HOH A 45 461 58 HOH TIP . D 4 HOH A 46 462 59 HOH TIP . D 4 HOH A 47 463 60 HOH TIP . D 4 HOH A 48 464 62 HOH TIP . D 4 HOH A 49 465 63 HOH TIP . D 4 HOH A 50 466 64 HOH TIP . D 4 HOH A 51 467 67 HOH TIP . D 4 HOH A 52 468 68 HOH TIP . D 4 HOH A 53 469 69 HOH TIP . D 4 HOH A 54 470 70 HOH TIP . D 4 HOH A 55 471 71 HOH TIP . D 4 HOH A 56 472 74 HOH TIP . D 4 HOH A 57 473 79 HOH TIP . D 4 HOH A 58 474 81 HOH TIP . D 4 HOH A 59 475 84 HOH TIP . D 4 HOH A 60 476 85 HOH TIP . D 4 HOH A 61 477 86 HOH TIP . D 4 HOH A 62 478 87 HOH TIP . D 4 HOH A 63 479 88 HOH TIP . D 4 HOH A 64 480 89 HOH TIP . D 4 HOH A 65 481 90 HOH TIP . D 4 HOH A 66 482 91 HOH TIP . D 4 HOH A 67 483 92 HOH TIP . D 4 HOH A 68 484 93 HOH TIP . D 4 HOH A 69 485 94 HOH TIP . D 4 HOH A 70 486 97 HOH TIP . D 4 HOH A 71 487 98 HOH TIP . D 4 HOH A 72 488 101 HOH TIP . D 4 HOH A 73 489 102 HOH TIP . D 4 HOH A 74 490 103 HOH TIP . D 4 HOH A 75 491 104 HOH TIP . D 4 HOH A 76 492 108 HOH TIP . D 4 HOH A 77 493 109 HOH TIP . D 4 HOH A 78 494 113 HOH TIP . D 4 HOH A 79 495 114 HOH TIP . D 4 HOH A 80 496 115 HOH TIP . D 4 HOH A 81 497 117 HOH TIP . D 4 HOH A 82 498 122 HOH TIP . D 4 HOH A 83 499 123 HOH TIP . D 4 HOH A 84 500 124 HOH TIP . D 4 HOH A 85 501 125 HOH TIP . D 4 HOH A 86 502 127 HOH TIP . D 4 HOH A 87 503 128 HOH TIP . D 4 HOH A 88 504 131 HOH TIP . D 4 HOH A 89 505 132 HOH TIP . D 4 HOH A 90 506 134 HOH TIP . D 4 HOH A 91 507 139 HOH TIP . D 4 HOH A 92 508 147 HOH TIP . D 4 HOH A 93 509 151 HOH TIP . D 4 HOH A 94 510 153 HOH TIP . D 4 HOH A 95 511 154 HOH TIP . D 4 HOH A 96 512 155 HOH TIP . D 4 HOH A 97 513 158 HOH TIP . D 4 HOH A 98 514 159 HOH TIP . D 4 HOH A 99 515 160 HOH TIP . D 4 HOH A 100 516 162 HOH TIP . D 4 HOH A 101 517 163 HOH TIP . D 4 HOH A 102 518 164 HOH TIP . D 4 HOH A 103 519 165 HOH TIP . D 4 HOH A 104 520 166 HOH TIP . D 4 HOH A 105 521 167 HOH TIP . D 4 HOH A 106 522 168 HOH TIP . D 4 HOH A 107 523 172 HOH TIP . D 4 HOH A 108 524 177 HOH TIP . D 4 HOH A 109 525 179 HOH TIP . D 4 HOH A 110 526 188 HOH TIP . D 4 HOH A 111 527 189 HOH TIP . D 4 HOH A 112 528 191 HOH TIP . D 4 HOH A 113 529 192 HOH TIP . D 4 HOH A 114 530 195 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1MZ . . . C 3 -36.284 -25.089 64.054 1 39.9 ? N1 1MZ 416 A 1 HETATM 2 C C2 1MZ . . . C 3 -37.54 -25.184 63.536 1 40.89 ? C2 1MZ 416 A 1 HETATM 3 N N3 1MZ . . . C 3 -38.421 -24.939 64.489 1 37.33 ? N3 1MZ 416 A 1 HETATM 4 C C4 1MZ . . . C 3 -37.769 -24.692 65.623 1 36.27 ? C4 1MZ 416 A 1 HETATM 5 C C5 1MZ . . . C 3 -36.437 -24.781 65.377 1 39.5 ? C5 1MZ 416 A 1 HETATM 6 C CM1 1MZ . . . C 3 -35.018 -25.282 63.331 1 37.89 ? CM1 1MZ 416 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #