data_2H9I # _model_server_result.job_id k7LHlR5IIGvwXDaexI0QFg _model_server_result.datetime_utc '2024-11-23 11:49:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2H9I # _exptl.entry_id 2H9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 798.588 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(2R,3S,4R,5R)-5-[(4S)-3-(AMINOCARBONYL)-4-(2-ETHYLISONICOTINOYL)PYRIDIN-1(4H)-YL]-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL}METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2H9I _cell.length_a 97.934 _cell.length_b 97.934 _cell.length_c 140.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -48.967 84.813332 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.806667 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -48.967 84.813332 46.806667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H36 N8 O15 P2' _chem_comp.formula_weight 798.588 _chem_comp.id EAD _chem_comp.mon_nstd_flag . _chem_comp.name '{(2R,3S,4R,5R)-5-[(4S)-3-(AMINOCARBONYL)-4-(2-ETHYLISONICOTINOYL)PYRIDIN-1(4H)-YL]-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL}METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-ETHYL-ISONICOTINIC-ACYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 EAD doub 83 n n P1 O2 EAD sing 84 n n P1 O3 EAD sing 85 n n P1 O7 EAD sing 86 n n O2 HO2 EAD sing 87 n n O3 C1 EAD sing 88 n n C1 C2 EAD sing 89 n n C1 H11 EAD sing 90 n n C1 H12A EAD sing 91 n n C2 O4 EAD sing 92 n n C2 C3 EAD sing 93 n n C2 H2 EAD sing 94 n n O4 C5 EAD sing 95 n n C3 O5 EAD sing 96 n n C3 C4 EAD sing 97 n n C3 H3 EAD sing 98 n n O5 HO5 EAD sing 99 n n C4 O6 EAD sing 100 n n C4 C5 EAD sing 101 n n C4 H4 EAD sing 102 n n O6 HO6 EAD sing 103 n n C5 N1 EAD sing 104 n n C5 H5 EAD sing 105 n n N1 C6 EAD sing 106 n y N1 C10 EAD sing 107 n y C6 N2 EAD doub 108 n y C6 H6 EAD sing 109 n n N2 C7 EAD sing 110 n y C7 C8 EAD sing 111 n y C7 C10 EAD doub 112 n y C8 N3 EAD sing 113 n n C8 N4 EAD doub 114 n y N3 HN31 EAD sing 115 n n N3 HN32 EAD sing 116 n n N4 C9 EAD sing 117 n y C9 N5 EAD doub 118 n y C9 H9 EAD sing 119 n n N5 C10 EAD sing 120 n y O7 P2 EAD sing 121 n n P2 O8 EAD doub 122 n n P2 O9 EAD sing 123 n n P2 O10 EAD sing 124 n n O9 HO9 EAD sing 125 n n O10 C11 EAD sing 126 n n C11 C12 EAD sing 127 n n C11 H111 EAD sing 128 n n C11 H112 EAD sing 129 n n C12 O11 EAD sing 130 n n C12 C13 EAD sing 131 n n C12 H12 EAD sing 132 n n O11 C15 EAD sing 133 n n C13 O12 EAD sing 134 n n C13 C14 EAD sing 135 n n C13 H1 EAD sing 136 n n O12 H7 EAD sing 137 n n C14 O13 EAD sing 138 n n C14 C15 EAD sing 139 n n C14 H14 EAD sing 140 n n O13 H13 EAD sing 141 n n C15 N6 EAD sing 142 n n C15 H15 EAD sing 143 n n N6 C16 EAD sing 144 n n N6 C21 EAD sing 145 n n C16 C17 EAD doub 146 n n C16 H16 EAD sing 147 n n C17 C18 EAD sing 148 n n C17 C19 EAD sing 149 n n C18 O14 EAD doub 150 n n C18 N7 EAD sing 151 n n N7 HN71 EAD sing 152 n n N7 HN72 EAD sing 153 n n C19 C20 EAD sing 154 n n C19 C22 EAD sing 155 n n C19 H19 EAD sing 156 n n C20 C21 EAD doub 157 n n C20 H20 EAD sing 158 n n C21 H21 EAD sing 159 n n C22 O15 EAD doub 160 n n C22 C25 EAD sing 161 n n N8 C23 EAD sing 162 n y N8 C27 EAD doub 163 n y C23 C24 EAD doub 164 n y C23 H23 EAD sing 165 n n C24 C25 EAD sing 166 n y C24 H24 EAD sing 167 n n C25 C26 EAD doub 168 n y C26 C27 EAD sing 169 n y C26 H26 EAD sing 170 n n C27 C28 EAD sing 171 n n C28 C29 EAD sing 172 n n C28 H281 EAD sing 173 n n C28 H282 EAD sing 174 n n C29 H291 EAD sing 175 n n C29 H292 EAD sing 176 n n C29 H293 EAD sing 177 n n # _atom_sites.entry_id 2H9I _atom_sites.fract_transf_matrix[1][1] 0.010211 _atom_sites.fract_transf_matrix[1][2] 0.005895 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EAD A 1 300 300 EAD EAD . C 3 HOH A 1 301 1 HOH TIP . C 3 HOH A 2 302 2 HOH TIP . C 3 HOH A 3 303 3 HOH TIP . C 3 HOH A 4 304 4 HOH TIP . C 3 HOH A 5 305 5 HOH TIP . C 3 HOH A 6 306 6 HOH TIP . C 3 HOH A 7 307 7 HOH TIP . C 3 HOH A 8 308 8 HOH TIP . C 3 HOH A 9 309 9 HOH TIP . C 3 HOH A 10 310 10 HOH TIP . C 3 HOH A 11 311 11 HOH TIP . C 3 HOH A 12 312 12 HOH TIP . C 3 HOH A 13 313 13 HOH TIP . C 3 HOH A 14 314 14 HOH TIP . C 3 HOH A 15 315 15 HOH TIP . C 3 HOH A 16 316 16 HOH TIP . C 3 HOH A 17 317 17 HOH TIP . C 3 HOH A 18 318 18 HOH TIP . C 3 HOH A 19 319 19 HOH TIP . C 3 HOH A 20 320 20 HOH TIP . C 3 HOH A 21 321 21 HOH TIP . C 3 HOH A 22 322 22 HOH TIP . C 3 HOH A 23 323 23 HOH TIP . C 3 HOH A 24 324 24 HOH TIP . C 3 HOH A 25 325 25 HOH TIP . C 3 HOH A 26 326 26 HOH TIP . C 3 HOH A 27 327 27 HOH TIP . C 3 HOH A 28 328 28 HOH TIP . C 3 HOH A 29 329 29 HOH TIP . C 3 HOH A 30 330 30 HOH TIP . C 3 HOH A 31 331 31 HOH TIP . C 3 HOH A 32 332 32 HOH TIP . C 3 HOH A 33 333 33 HOH TIP . C 3 HOH A 34 334 34 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 EAD . . . B 2 -0.6 33.515 11.15 0.98 49.9 ? P1 EAD 300 A 1 HETATM 2 O O1 EAD . . . B 2 -0.936 32.137 10.624 0.98 47.93 ? O1 EAD 300 A 1 HETATM 3 O O2 EAD . . . B 2 0.348 34.339 10.373 0.98 48.91 ? O2 EAD 300 A 1 HETATM 4 O O3 EAD . . . B 2 0.052 33.541 12.668 0.98 50.52 ? O3 EAD 300 A 1 HETATM 5 C C1 EAD . . . B 2 -0.415 32.922 13.926 0.98 50.71 ? C1 EAD 300 A 1 HETATM 6 C C2 EAD . . . B 2 0.295 31.742 14.578 0.98 49.41 ? C2 EAD 300 A 1 HETATM 7 O O4 EAD . . . B 2 -0.522 30.502 14.637 0.98 50.67 ? O4 EAD 300 A 1 HETATM 8 C C3 EAD . . . B 2 1.496 31.241 13.807 0.98 48.26 ? C3 EAD 300 A 1 HETATM 9 O O5 EAD . . . B 2 2.627 31.992 14.203 0.98 44.73 ? O5 EAD 300 A 1 HETATM 10 C C4 EAD . . . B 2 1.593 29.82 14.188 0.98 48.36 ? C4 EAD 300 A 1 HETATM 11 O O6 EAD . . . B 2 2.885 29.311 14.513 0.98 52.02 ? O6 EAD 300 A 1 HETATM 12 C C5 EAD . . . B 2 0.482 29.777 15.253 0.98 48.42 ? C5 EAD 300 A 1 HETATM 13 N N1 EAD . . . B 2 0.466 28.254 15.61 0.98 48.36 ? N1 EAD 300 A 1 HETATM 14 C C6 EAD . . . B 2 -0.372 27.202 15.471 0.98 46.3 ? C6 EAD 300 A 1 HETATM 15 N N2 EAD . . . B 2 -0.379 26.337 16.487 0.98 48.26 ? N2 EAD 300 A 1 HETATM 16 C C7 EAD . . . B 2 0.449 26.838 17.324 0.98 46.28 ? C7 EAD 300 A 1 HETATM 17 C C8 EAD . . . B 2 0.837 26.297 18.619 0.98 47.2 ? C8 EAD 300 A 1 HETATM 18 N N3 EAD . . . B 2 0.349 25.285 18.932 0.98 47.43 ? N3 EAD 300 A 1 HETATM 19 N N4 EAD . . . B 2 1.743 26.995 19.386 0.98 47.86 ? N4 EAD 300 A 1 HETATM 20 C C9 EAD . . . B 2 2.299 28.189 18.974 0.98 48.27 ? C9 EAD 300 A 1 HETATM 21 N N5 EAD . . . B 2 1.975 28.728 17.76 0.98 49.98 ? N5 EAD 300 A 1 HETATM 22 C C10 EAD . . . B 2 1.004 28.04 16.868 0.98 46.57 ? C10 EAD 300 A 1 HETATM 23 O O7 EAD . . . B 2 -1.996 34.257 11.048 0.98 48.38 ? O7 EAD 300 A 1 HETATM 24 P P2 EAD . . . B 2 -2.63 35.561 11.708 0.98 46.64 ? P2 EAD 300 A 1 HETATM 25 O O8 EAD . . . B 2 -3.745 36.118 10.868 0.98 48.66 ? O8 EAD 300 A 1 HETATM 26 O O9 EAD . . . B 2 -1.401 36.384 11.934 0.98 47.01 ? O9 EAD 300 A 1 HETATM 27 O O10 EAD . . . B 2 -3.201 35.025 13.1 0.98 47.53 ? O10 EAD 300 A 1 HETATM 28 C C11 EAD . . . B 2 -2.765 35.509 14.366 0.98 47.53 ? C11 EAD 300 A 1 HETATM 29 C C12 EAD . . . B 2 -3.93 35.737 15.323 0.98 47.86 ? C12 EAD 300 A 1 HETATM 30 O O11 EAD . . . B 2 -4.742 36.801 14.747 0.98 48.2 ? O11 EAD 300 A 1 HETATM 31 C C13 EAD . . . B 2 -4.924 34.551 15.598 0.98 46.53 ? C13 EAD 300 A 1 HETATM 32 O O12 EAD . . . B 2 -5.381 34.395 16.935 0.98 47.34 ? O12 EAD 300 A 1 HETATM 33 C C14 EAD . . . B 2 -6.007 34.84 14.603 0.98 47.33 ? C14 EAD 300 A 1 HETATM 34 O O13 EAD . . . B 2 -7.273 34.183 14.579 0.98 44.1 ? O13 EAD 300 A 1 HETATM 35 C C15 EAD . . . B 2 -6.095 36.343 14.724 0.98 46.89 ? C15 EAD 300 A 1 HETATM 36 N N6 EAD . . . B 2 -6.895 36.932 13.609 0.98 47.26 ? N6 EAD 300 A 1 HETATM 37 C C16 EAD . . . B 2 -6.538 36.895 12.202 0.98 49.47 ? C16 EAD 300 A 1 HETATM 38 C C17 EAD . . . B 2 -7.417 37.484 11.218 0.98 47.68 ? C17 EAD 300 A 1 HETATM 39 C C18 EAD . . . B 2 -7.052 37.47 9.698 0.98 47.14 ? C18 EAD 300 A 1 HETATM 40 O O14 EAD . . . B 2 -5.996 36.957 9.289 0.98 48.24 ? O14 EAD 300 A 1 HETATM 41 N N7 EAD . . . B 2 -7.946 38.051 8.884 0.98 46.38 ? N7 EAD 300 A 1 HETATM 42 C C19 EAD . . . B 2 -8.686 38.105 11.681 0.98 48.44 ? C19 EAD 300 A 1 HETATM 43 C C20 EAD . . . B 2 -8.947 38.129 13.115 0.98 48.06 ? C20 EAD 300 A 1 HETATM 44 C C21 EAD . . . B 2 -8.081 37.555 14.051 0.98 47.75 ? C21 EAD 300 A 1 HETATM 45 C C22 EAD . . . B 2 -9.955 37.232 11.181 0.98 47.46 ? C22 EAD 300 A 1 HETATM 46 O O15 EAD . . . B 2 -9.768 35.986 10.945 0.98 46.03 ? O15 EAD 300 A 1 HETATM 47 N N8 EAD . . . B 2 -14.049 38.595 10.674 0.98 47.4 ? N8 EAD 300 A 1 HETATM 48 C C23 EAD . . . B 2 -13.099 39.527 11.057 0.98 46.58 ? C23 EAD 300 A 1 HETATM 49 C C24 EAD . . . B 2 -11.769 39.122 11.226 0.98 44.88 ? C24 EAD 300 A 1 HETATM 50 C C25 EAD . . . B 2 -11.41 37.75 10.991 0.98 46.37 ? C25 EAD 300 A 1 HETATM 51 C C26 EAD . . . B 2 -12.435 36.801 10.581 0.98 45.88 ? C26 EAD 300 A 1 HETATM 52 C C27 EAD . . . B 2 -13.78 37.277 10.434 0.98 47.79 ? C27 EAD 300 A 1 HETATM 53 C C28 EAD . . . B 2 -14.964 36.4 10.03 0.98 46.93 ? C28 EAD 300 A 1 HETATM 54 C C29 EAD . . . B 2 -15.917 37.053 9.011 0.98 49.5 ? C29 EAD 300 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 54 #