data_2H9V # _model_server_result.job_id pdWUi-z-QtuSuIlwib3x-w _model_server_result.datetime_utc '2024-11-25 10:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2h9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2H9V # _exptl.entry_id 2H9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.336 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2H9V _cell.length_a 90.781 _cell.length_b 90.781 _cell.length_c 341.279 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H21 N3 O' _chem_comp.formula_weight 247.336 _chem_comp.id Y27 _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C22 Y27 doub 376 n n C22 C31 Y27 sing 377 n n C22 N21 Y27 sing 378 n n C31 C36 Y27 sing 379 n n C31 C32 Y27 sing 380 n n C31 H31 Y27 sing 381 n n C36 C35 Y27 sing 382 n n C36 H361 Y27 sing 383 n n C36 H362 Y27 sing 384 n n C35 C34 Y27 sing 385 n n C35 H351 Y27 sing 386 n n C35 H352 Y27 sing 387 n n C34 C33 Y27 sing 388 n n C34 C41 Y27 sing 389 n n C34 H34 Y27 sing 390 n n C33 C32 Y27 sing 391 n n C33 H331 Y27 sing 392 n n C33 H332 Y27 sing 393 n n C32 H321 Y27 sing 394 n n C32 H322 Y27 sing 395 n n C41 C42 Y27 sing 396 n n C41 N43 Y27 sing 397 n n C41 H41 Y27 sing 398 n n C42 H421 Y27 sing 399 n n C42 H422 Y27 sing 400 n n C42 H423 Y27 sing 401 n n N43 H431 Y27 sing 402 n n N43 H432 Y27 sing 403 n n N21 C14 Y27 sing 404 n n N21 H21 Y27 sing 405 n n C14 C15 Y27 doub 406 n y C14 C13 Y27 sing 407 n y C15 C16 Y27 sing 408 n y C15 H15 Y27 sing 409 n n C16 N11 Y27 doub 410 n y C16 H16 Y27 sing 411 n n N11 C12 Y27 sing 412 n y C12 C13 Y27 doub 413 n y C12 H12 Y27 sing 414 n n C13 H13 Y27 sing 415 n n # _atom_sites.entry_id 2H9V _atom_sites.fract_transf_matrix[1][1] 0.011 _atom_sites.fract_transf_matrix[1][2] 0.0064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y27 A 1 500 500 Y27 Y27 . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 Y27 . . . B 2 3.725 -16.484 -30.001 1 52.73 ? O23 Y27 500 A 1 HETATM 2 C C22 Y27 . . . B 2 3.489 -16.751 -31.196 1 51.8 ? C22 Y27 500 A 1 HETATM 3 C C31 Y27 . . . B 2 4.07 -17.95 -31.867 1 50.52 ? C31 Y27 500 A 1 HETATM 4 C C36 Y27 . . . B 2 5.575 -17.956 -31.595 1 50.54 ? C36 Y27 500 A 1 HETATM 5 C C35 Y27 . . . B 2 6.165 -19.235 -32.177 1 50.41 ? C35 Y27 500 A 1 HETATM 6 C C34 Y27 . . . B 2 5.601 -20.417 -31.38 1 49.22 ? C34 Y27 500 A 1 HETATM 7 C C33 Y27 . . . B 2 4.087 -20.536 -31.654 1 50 ? C33 Y27 500 A 1 HETATM 8 C C32 Y27 . . . B 2 3.321 -19.197 -31.392 1 49.17 ? C32 Y27 500 A 1 HETATM 9 C C41 Y27 . . . B 2 6.393 -21.693 -31.751 1 48.39 ? C41 Y27 500 A 1 HETATM 10 C C42 Y27 . . . B 2 6.524 -21.799 -33.28 1 46.63 ? C42 Y27 500 A 1 HETATM 11 N N43 Y27 . . . B 2 7.75 -21.687 -31.102 1 48.8 ? N43 Y27 500 A 1 HETATM 12 N N21 Y27 . . . B 2 2.666 -16.046 -32.129 1 50.87 ? N21 Y27 500 A 1 HETATM 13 C C14 Y27 . . . B 2 2.206 -14.69 -32.141 1 50.57 ? C14 Y27 500 A 1 HETATM 14 C C15 Y27 . . . B 2 1.546 -14.31 -33.322 1 51.35 ? C15 Y27 500 A 1 HETATM 15 C C16 Y27 . . . B 2 1.076 -12.984 -33.37 1 51.7 ? C16 Y27 500 A 1 HETATM 16 N N11 Y27 . . . B 2 1.246 -12.114 -32.347 1 51.08 ? N11 Y27 500 A 1 HETATM 17 C C12 Y27 . . . B 2 1.888 -12.467 -31.221 1 51.44 ? C12 Y27 500 A 1 HETATM 18 C C13 Y27 . . . B 2 2.387 -13.764 -31.074 1 50.5 ? C13 Y27 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #