data_2HAV # _model_server_result.job_id XPeglXq7PCWiO-BfcMMIpg _model_server_result.datetime_utc '2024-11-05 16:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":9204}' # _entry.id 2HAV # _exptl.entry_id 2HAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HAV _cell.length_a 88.324 _cell.length_b 103.258 _cell.length_c 200.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 9 1_555 A SG CYS 45 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 16 A CYS 19 1_555 A SG CYS 36 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 115 A CYS 118 1_555 A SG CYS 191 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 134 A CYS 137 1_555 A SG CYS 328 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 A SG CYS 155 A CYS 158 1_555 A SG CYS 171 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 158 A CYS 161 1_555 A SG CYS 176 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 A SG CYS 168 A CYS 171 1_555 A SG CYS 174 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 224 A CYS 227 1_555 A SG CYS 238 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 336 A CYS 339 1_555 A SG CYS 593 A CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 A SG CYS 342 A CYS 345 1_555 A SG CYS 374 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 A SG CYS 352 A CYS 355 1_555 A SG CYS 365 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf12 A SG CYS 399 A CYS 402 1_555 A SG CYS 671 A CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 A SG CYS 415 A CYS 418 1_555 A SG CYS 634 A CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 A SG CYS 447 A CYS 450 1_555 A SG CYS 520 A CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 A SG CYS 471 A CYS 474 1_555 A SG CYS 662 A CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 A SG CYS 481 A CYS 484 1_555 A SG CYS 495 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf17 A SG CYS 492 A CYS 495 1_555 A SG CYS 503 A CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf18 A SG CYS 560 A CYS 563 1_555 A SG CYS 574 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 A SG CYS 612 A CYS 615 1_555 A SG CYS 617 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 B SG CYS 6 B CYS 9 1_555 B SG CYS 45 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf21 B SG CYS 16 B CYS 19 1_555 B SG CYS 36 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf22 B SG CYS 115 B CYS 118 1_555 B SG CYS 191 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf23 B SG CYS 134 B CYS 137 1_555 B SG CYS 328 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf24 B SG CYS 155 B CYS 158 1_555 B SG CYS 171 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf25 B SG CYS 158 B CYS 161 1_555 B SG CYS 176 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf26 B SG CYS 168 B CYS 171 1_555 B SG CYS 174 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf27 B SG CYS 224 B CYS 227 1_555 B SG CYS 238 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf28 B SG CYS 336 B CYS 339 1_555 B SG CYS 593 B CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf29 B SG CYS 342 B CYS 345 1_555 B SG CYS 374 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 B SG CYS 352 B CYS 355 1_555 B SG CYS 365 B CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf31 B SG CYS 399 B CYS 402 1_555 B SG CYS 671 B CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf32 B SG CYS 415 B CYS 418 1_555 B SG CYS 634 B CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf33 B SG CYS 447 B CYS 450 1_555 B SG CYS 520 B CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf34 B SG CYS 471 B CYS 474 1_555 B SG CYS 662 B CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf35 B SG CYS 481 B CYS 484 1_555 B SG CYS 495 B CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf36 B SG CYS 492 B CYS 495 1_555 B SG CYS 503 B CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf37 B SG CYS 560 B CYS 563 1_555 B SG CYS 574 B CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf38 B SG CYS 612 B CYS 615 1_555 B SG CYS 617 B CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 2HAV _atom_sites.fract_transf_matrix[1][1] 0.011322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 9202 9202 CIT CIT . D 2 CIT A 1 9203 9203 CIT CIT . E 2 CIT A 1 9207 9207 CIT CIT . F 3 GOL A 1 9101 9101 GOL GOL . G 3 GOL A 1 9103 9103 GOL GOL . H 3 GOL A 1 9104 9104 GOL GOL . I 2 CIT B 1 9201 9201 CIT CIT . J 2 CIT B 1 9204 9204 CIT CIT . K 2 CIT B 1 9205 9205 CIT CIT . L 2 CIT B 1 9206 9206 CIT CIT . M 3 GOL B 1 9102 9102 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . J 2 34.116 32.818 35.797 1 84.54 ? C1 CIT 9204 B 1 HETATM 2 O O1 CIT . . . J 2 34.269 31.71 35.215 1 86.61 ? O1 CIT 9204 B 1 HETATM 3 O O2 CIT . . . J 2 34.799 33.83 35.471 1 84.18 ? O2 CIT 9204 B 1 HETATM 4 C C2 CIT . . . J 2 33.089 32.998 36.949 1 82.41 ? C2 CIT 9204 B 1 HETATM 5 C C3 CIT . . . J 2 31.989 31.894 37.054 1 78.02 ? C3 CIT 9204 B 1 HETATM 6 O O7 CIT . . . J 2 30.684 32.509 36.667 1 73.93 ? O7 CIT 9204 B 1 HETATM 7 C C4 CIT . . . J 2 31.975 31.441 38.516 1 78.08 ? C4 CIT 9204 B 1 HETATM 8 C C5 CIT . . . J 2 30.529 31.147 38.976 1 76.65 ? C5 CIT 9204 B 1 HETATM 9 O O3 CIT . . . J 2 29.601 31.826 38.505 1 77.41 ? O3 CIT 9204 B 1 HETATM 10 O O4 CIT . . . J 2 30.336 30.237 39.811 1 76.34 ? O4 CIT 9204 B 1 HETATM 11 C C6 CIT . . . J 2 32.333 30.609 36.242 1 76.62 ? C6 CIT 9204 B 1 HETATM 12 O O5 CIT . . . J 2 33.403 30.008 36.523 1 77.65 ? O5 CIT 9204 B 1 HETATM 13 O O6 CIT . . . J 2 31.548 30.191 35.333 1 76.78 ? O6 CIT 9204 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #