data_2HB9 # _model_server_result.job_id XivYjJcoRS2T4y9ZWUQk2A _model_server_result.datetime_utc '2024-11-07 08:55:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 2HB9 # _exptl.entry_id 2HB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HB9 _cell.length_a 104.09 _cell.length_b 104.09 _cell.length_c 98.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.045 90.144584 0 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 32.736667 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 52.045 90.144584 32.736667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 218 A CYS 256 1_555 A SG CYS 246 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A NE2 HIS 84 A HIS 116 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A ND1 HIS 86 A HIS 118 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 A OD2 ASP 88 A ASP 120 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc4 A NE2 HIS 89 A HIS 121 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 A NE2 HIS 160 A HIS 196 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 A NE2 HIS 225 A HIS 263 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc7 B ZN ZN . A ZN 401 1_555 F N2 L13 . A L13 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc8 C ZN ZN . A ZN 402 1_555 F S6 L13 . A L13 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2HB9 _atom_sites.fract_transf_matrix[1][1] 0.009607 _atom_sites.fract_transf_matrix[1][2] 0.005547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 2 ZN A 1 402 402 ZN ZN . D 3 SO4 A 1 1 1 SO4 SO4 . E 3 SO4 A 1 2 2 SO4 SO4 . F 4 L13 A 1 500 500 L13 L13 . G 4 L13 A 1 501 501 L13 L13 . H 5 HOH A 1 502 4 HOH HOH . H 5 HOH A 2 503 5 HOH HOH . H 5 HOH A 3 504 6 HOH HOH . H 5 HOH A 4 505 7 HOH HOH . H 5 HOH A 5 506 8 HOH HOH . H 5 HOH A 6 507 9 HOH HOH . H 5 HOH A 7 508 10 HOH HOH . H 5 HOH A 8 509 11 HOH HOH . H 5 HOH A 9 510 12 HOH HOH . H 5 HOH A 10 511 13 HOH HOH . H 5 HOH A 11 512 14 HOH HOH . H 5 HOH A 12 513 15 HOH HOH . H 5 HOH A 13 514 16 HOH HOH . H 5 HOH A 14 515 17 HOH HOH . H 5 HOH A 15 516 18 HOH HOH . H 5 HOH A 16 517 19 HOH HOH . H 5 HOH A 17 518 20 HOH HOH . H 5 HOH A 18 519 21 HOH HOH . H 5 HOH A 19 520 22 HOH HOH . H 5 HOH A 20 521 23 HOH HOH . H 5 HOH A 21 522 24 HOH HOH . H 5 HOH A 22 523 25 HOH HOH . H 5 HOH A 23 524 26 HOH HOH . H 5 HOH A 24 525 27 HOH HOH . H 5 HOH A 25 526 28 HOH HOH . H 5 HOH A 26 527 29 HOH HOH . H 5 HOH A 27 528 30 HOH HOH . H 5 HOH A 28 529 31 HOH HOH . H 5 HOH A 29 530 32 HOH HOH . H 5 HOH A 30 531 33 HOH HOH . H 5 HOH A 31 532 34 HOH HOH . H 5 HOH A 32 533 35 HOH HOH . H 5 HOH A 33 534 36 HOH HOH . H 5 HOH A 34 535 37 HOH HOH . H 5 HOH A 35 536 38 HOH HOH . H 5 HOH A 36 537 39 HOH HOH . H 5 HOH A 37 538 40 HOH HOH . H 5 HOH A 38 539 41 HOH HOH . H 5 HOH A 39 540 42 HOH HOH . H 5 HOH A 40 541 43 HOH HOH . H 5 HOH A 41 542 44 HOH HOH . H 5 HOH A 42 543 45 HOH HOH . H 5 HOH A 43 544 46 HOH HOH . H 5 HOH A 44 545 47 HOH HOH . H 5 HOH A 45 546 48 HOH HOH . H 5 HOH A 46 547 49 HOH HOH . H 5 HOH A 47 548 50 HOH HOH . H 5 HOH A 48 549 51 HOH HOH . H 5 HOH A 49 550 52 HOH HOH . H 5 HOH A 50 551 53 HOH HOH . H 5 HOH A 51 552 54 HOH HOH . H 5 HOH A 52 553 55 HOH HOH . H 5 HOH A 53 554 56 HOH HOH . H 5 HOH A 54 555 57 HOH HOH . H 5 HOH A 55 556 58 HOH HOH . H 5 HOH A 56 557 59 HOH HOH . H 5 HOH A 57 558 60 HOH HOH . H 5 HOH A 58 559 61 HOH HOH . H 5 HOH A 59 560 62 HOH HOH . H 5 HOH A 60 561 63 HOH HOH . H 5 HOH A 61 562 64 HOH HOH . H 5 HOH A 62 563 65 HOH HOH . H 5 HOH A 63 564 66 HOH HOH . H 5 HOH A 64 565 67 HOH HOH . H 5 HOH A 65 566 68 HOH HOH . H 5 HOH A 66 567 69 HOH HOH . H 5 HOH A 67 568 70 HOH HOH . H 5 HOH A 68 569 72 HOH HOH . H 5 HOH A 69 570 73 HOH HOH . H 5 HOH A 70 571 75 HOH HOH . H 5 HOH A 71 572 76 HOH HOH . H 5 HOH A 72 573 77 HOH HOH . H 5 HOH A 73 574 78 HOH HOH . H 5 HOH A 74 575 79 HOH HOH . H 5 HOH A 75 576 80 HOH HOH . H 5 HOH A 76 577 81 HOH HOH . H 5 HOH A 77 578 82 HOH HOH . H 5 HOH A 78 579 83 HOH HOH . H 5 HOH A 79 580 84 HOH HOH . H 5 HOH A 80 581 85 HOH HOH . H 5 HOH A 81 582 86 HOH HOH . H 5 HOH A 82 583 87 HOH HOH . H 5 HOH A 83 584 88 HOH HOH . H 5 HOH A 84 585 90 HOH HOH . H 5 HOH A 85 586 91 HOH HOH . H 5 HOH A 86 587 92 HOH HOH . H 5 HOH A 87 588 94 HOH HOH . H 5 HOH A 88 589 95 HOH HOH . H 5 HOH A 89 590 96 HOH HOH . H 5 HOH A 90 591 97 HOH HOH . H 5 HOH A 91 592 98 HOH HOH . H 5 HOH A 92 593 99 HOH HOH . H 5 HOH A 93 594 100 HOH HOH . H 5 HOH A 94 595 101 HOH HOH . H 5 HOH A 95 596 102 HOH HOH . H 5 HOH A 96 597 104 HOH HOH . H 5 HOH A 97 598 105 HOH HOH . H 5 HOH A 98 599 106 HOH HOH . H 5 HOH A 99 600 107 HOH HOH . H 5 HOH A 100 601 108 HOH HOH . H 5 HOH A 101 602 109 HOH HOH . H 5 HOH A 102 603 111 HOH HOH . H 5 HOH A 103 604 112 HOH HOH . H 5 HOH A 104 605 113 HOH HOH . H 5 HOH A 105 606 114 HOH HOH . H 5 HOH A 106 607 117 HOH HOH . H 5 HOH A 107 608 118 HOH HOH . H 5 HOH A 108 609 119 HOH HOH . H 5 HOH A 109 610 120 HOH HOH . H 5 HOH A 110 611 122 HOH HOH . H 5 HOH A 111 612 123 HOH HOH . H 5 HOH A 112 613 124 HOH HOH . H 5 HOH A 113 614 125 HOH HOH . H 5 HOH A 114 615 126 HOH HOH . H 5 HOH A 115 616 127 HOH HOH . H 5 HOH A 116 617 128 HOH HOH . H 5 HOH A 117 618 129 HOH HOH . H 5 HOH A 118 619 131 HOH HOH . H 5 HOH A 119 620 132 HOH HOH . H 5 HOH A 120 621 133 HOH HOH . H 5 HOH A 121 622 135 HOH HOH . H 5 HOH A 122 623 136 HOH HOH . H 5 HOH A 123 624 137 HOH HOH . H 5 HOH A 124 625 138 HOH HOH . H 5 HOH A 125 626 139 HOH HOH . H 5 HOH A 126 627 140 HOH HOH . H 5 HOH A 127 628 141 HOH HOH . H 5 HOH A 128 629 142 HOH HOH . H 5 HOH A 129 630 143 HOH HOH . H 5 HOH A 130 631 144 HOH HOH . H 5 HOH A 131 632 145 HOH HOH . H 5 HOH A 132 633 146 HOH HOH . H 5 HOH A 133 634 147 HOH HOH . H 5 HOH A 134 635 148 HOH HOH . H 5 HOH A 135 636 149 HOH HOH . H 5 HOH A 136 637 150 HOH HOH . H 5 HOH A 137 638 151 HOH HOH . H 5 HOH A 138 639 153 HOH HOH . H 5 HOH A 139 640 154 HOH HOH . H 5 HOH A 140 641 155 HOH HOH . H 5 HOH A 141 642 156 HOH HOH . H 5 HOH A 142 643 157 HOH HOH . H 5 HOH A 143 644 158 HOH HOH . H 5 HOH A 144 645 159 HOH HOH . H 5 HOH A 145 646 160 HOH HOH . H 5 HOH A 146 647 161 HOH HOH . H 5 HOH A 147 648 162 HOH HOH . H 5 HOH A 148 649 163 HOH HOH . H 5 HOH A 149 650 164 HOH HOH . H 5 HOH A 150 651 165 HOH HOH . H 5 HOH A 151 652 167 HOH HOH . H 5 HOH A 152 653 168 HOH HOH . H 5 HOH A 153 654 169 HOH HOH . H 5 HOH A 154 655 170 HOH HOH . H 5 HOH A 155 656 171 HOH HOH . H 5 HOH A 156 657 172 HOH HOH . H 5 HOH A 157 658 173 HOH HOH . H 5 HOH A 158 659 174 HOH HOH . H 5 HOH A 159 660 175 HOH HOH . H 5 HOH A 160 661 176 HOH HOH . H 5 HOH A 161 662 177 HOH HOH . H 5 HOH A 162 663 178 HOH HOH . H 5 HOH A 163 664 179 HOH HOH . H 5 HOH A 164 665 180 HOH HOH . H 5 HOH A 165 666 181 HOH HOH . H 5 HOH A 166 667 182 HOH HOH . H 5 HOH A 167 668 183 HOH HOH . H 5 HOH A 168 669 184 HOH HOH . H 5 HOH A 169 670 185 HOH HOH . H 5 HOH A 170 671 186 HOH HOH . H 5 HOH A 171 672 187 HOH HOH . H 5 HOH A 172 673 188 HOH HOH . H 5 HOH A 173 674 189 HOH HOH . H 5 HOH A 174 675 190 HOH HOH . H 5 HOH A 175 676 191 HOH HOH . H 5 HOH A 176 677 192 HOH HOH . H 5 HOH A 177 678 193 HOH HOH . H 5 HOH A 178 679 194 HOH HOH . H 5 HOH A 179 680 195 HOH HOH . H 5 HOH A 180 681 196 HOH HOH . H 5 HOH A 181 682 197 HOH HOH . H 5 HOH A 182 683 198 HOH HOH . H 5 HOH A 183 684 199 HOH HOH . H 5 HOH A 184 685 200 HOH HOH . H 5 HOH A 185 686 202 HOH HOH . H 5 HOH A 186 687 206 HOH HOH . H 5 HOH A 187 688 209 HOH HOH . H 5 HOH A 188 689 210 HOH HOH . H 5 HOH A 189 690 212 HOH HOH . H 5 HOH A 190 691 213 HOH HOH . H 5 HOH A 191 692 214 HOH HOH . H 5 HOH A 192 693 215 HOH HOH . H 5 HOH A 193 694 218 HOH HOH . H 5 HOH A 194 695 224 HOH HOH . H 5 HOH A 195 696 225 HOH HOH . H 5 HOH A 196 697 227 HOH HOH . H 5 HOH A 197 698 228 HOH HOH . H 5 HOH A 198 699 230 HOH HOH . H 5 HOH A 199 700 235 HOH HOH . H 5 HOH A 200 701 239 HOH HOH . H 5 HOH A 201 702 240 HOH HOH . H 5 HOH A 202 703 241 HOH HOH . H 5 HOH A 203 704 244 HOH HOH . H 5 HOH A 204 705 246 HOH HOH . H 5 HOH A 205 706 250 HOH HOH . H 5 HOH A 206 707 255 HOH HOH . H 5 HOH A 207 708 256 HOH HOH . H 5 HOH A 208 709 257 HOH HOH . H 5 HOH A 209 710 260 HOH HOH . H 5 HOH A 210 711 262 HOH HOH . H 5 HOH A 211 712 269 HOH HOH . H 5 HOH A 212 713 275 HOH HOH . H 5 HOH A 213 714 276 HOH HOH . H 5 HOH A 214 715 280 HOH HOH . H 5 HOH A 215 716 281 HOH HOH . H 5 HOH A 216 717 282 HOH HOH . H 5 HOH A 217 718 283 HOH HOH . H 5 HOH A 218 719 284 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.108 _atom_site.Cartn_y 32.137 _atom_site.Cartn_z 31.23 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #