data_2HBD
#
_model_server_result.job_id            62OEb-cCWLYiscwKwlwkQQ 
_model_server_result.datetime_utc      '2025-07-08 04:16:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hbd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":143}' 
#
_entry.id    2HBD 
#
_exptl.entry_id    2HBD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              41.052 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'METHYL ISOCYANIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HBD 
_cell.length_a            54.05 
_cell.length_b            54.05 
_cell.length_c            193.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HBD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C MNC . A MNC 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc3 C FE HEM . A HEM 142 1_555 D N MNC . A MNC 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? 
metalc ? metalc5 E FE HEM . B HEM 147 1_555 F C MNC . B MNC 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
metalc ? metalc6 E FE HEM . B HEM 147 1_555 F N MNC . B MNC 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
#
_chem_comp.formula           'C2 H3 N' 
_chem_comp.formula_weight    41.052 
_chem_comp.id                MNC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'METHYL ISOCYANIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N MNC trip 298 n n 
N C1 MNC sing 299 n n 
C1 H11 MNC sing 300 n n 
C1 H12 MNC sing 301 n n 
C1 H13 MNC sing 302 n n 
#
_atom_sites.entry_id                     2HBD 
_atom_sites.fract_transf_matrix[1][1]    0.018501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018501 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 142 142 HEM HEM . 
D 4 MNC A 1 143 143 MNC MNC . 
E 3 HEM B 1 147 147 HEM HEM . 
F 4 MNC B 1 148 148 MNC MNC . 
G 5 HOH A 1 175 175 HOH HOH . 
G 5 HOH A 2 176 176 HOH HOH . 
G 5 HOH A 3 181 181 HOH HOH . 
G 5 HOH A 4 182 182 HOH HOH . 
G 5 HOH A 5 187 187 HOH HOH . 
G 5 HOH A 6 190 190 HOH HOH . 
G 5 HOH A 7 198 198 HOH HOH . 
G 5 HOH A 8 200 200 HOH HOH . 
G 5 HOH A 9 205 205 HOH HOH . 
G 5 HOH A 10 206 206 HOH HOH . 
G 5 HOH A 11 210 210 HOH HOH . 
G 5 HOH A 12 213 213 HOH HOH . 
G 5 HOH A 13 214 214 HOH HOH . 
G 5 HOH A 14 218 218 HOH HOH . 
G 5 HOH A 15 234 234 HOH HOH . 
G 5 HOH A 16 239 239 HOH HOH . 
G 5 HOH A 17 240 240 HOH HOH . 
G 5 HOH A 18 242 242 HOH HOH . 
G 5 HOH A 19 244 244 HOH HOH . 
G 5 HOH A 20 245 245 HOH HOH . 
G 5 HOH A 21 247 247 HOH HOH . 
G 5 HOH A 22 248 248 HOH HOH . 
G 5 HOH A 23 361 361 HOH HOH . 
G 5 HOH A 24 363 363 HOH HOH . 
H 5 HOH B 1 160 160 HOH HOH . 
H 5 HOH B 2 161 161 HOH HOH . 
H 5 HOH B 3 162 162 HOH HOH . 
H 5 HOH B 4 165 165 HOH HOH . 
H 5 HOH B 5 168 168 HOH HOH . 
H 5 HOH B 6 169 169 HOH HOH . 
H 5 HOH B 7 170 170 HOH HOH . 
H 5 HOH B 8 172 172 HOH HOH . 
H 5 HOH B 9 173 173 HOH HOH . 
H 5 HOH B 10 177 177 HOH HOH . 
H 5 HOH B 11 180 180 HOH HOH . 
H 5 HOH B 12 193 193 HOH HOH . 
H 5 HOH B 13 197 197 HOH HOH . 
H 5 HOH B 14 209 209 HOH HOH . 
H 5 HOH B 15 216 216 HOH HOH . 
H 5 HOH B 16 220 220 HOH HOH . 
H 5 HOH B 17 223 223 HOH HOH . 
H 5 HOH B 18 228 228 HOH HOH . 
H 5 HOH B 19 230 230 HOH HOH . 
H 5 HOH B 20 232 232 HOH HOH . 
H 5 HOH B 21 233 233 HOH HOH . 
H 5 HOH B 22 235 235 HOH HOH . 
H 5 HOH B 23 237 237 HOH HOH . 
H 5 HOH B 24 238 238 HOH HOH . 
H 5 HOH B 25 241 241 HOH HOH . 
H 5 HOH B 26 250 250 HOH HOH . 
H 5 HOH B 27 254 254 HOH HOH . 
H 5 HOH B 28 258 258 HOH HOH . 
H 5 HOH B 29 260 260 HOH HOH . 
H 5 HOH B 30 264 264 HOH HOH . 
H 5 HOH B 31 265 265 HOH HOH . 
H 5 HOH B 32 266 266 HOH HOH . 
H 5 HOH B 33 358 358 HOH HOH . 
H 5 HOH B 34 360 360 HOH HOH . 
H 5 HOH B 35 364 364 HOH HOH . 
H 5 HOH B 36 365 365 HOH HOH . 
H 5 HOH B 37 408 408 HOH HOH . 
H 5 HOH B 38 458 458 HOH HOH . 
H 5 HOH B 39 461 461 HOH HOH . 
H 5 HOH B 40 462 462 HOH HOH . 
H 5 HOH B 41 558 558 HOH HOH . 
H 5 HOH B 42 562 562 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C MNC . . . D 4 39.187 29.454 16.242 1 19.82 ? C MNC 143 A 1 
HETATM 2 N N MNC . . . D 4 39.438 28.754 17.013 1 20.87 ? N MNC 143 A 1 
HETATM 3 C C1 MNC . . . D 4 38.006 28.359 17.462 1 17.12 ? C1 MNC 143 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           3 
#