data_2HBF # _model_server_result.job_id 1ICxbc0WoIzYQCklp3PD9Q _model_server_result.datetime_utc '2024-11-05 01:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":143}' # _entry.id 2HBF # _exptl.entry_id 2HBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.105 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-PROPYL ISOCYANIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HBF _cell.length_a 54.05 _cell.length_b 54.05 _cell.length_c 193.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C NPN . A NPN 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? metalc ? metalc3 C FE HEM . A HEM 142 1_555 D N NPN . A NPN 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc5 E FE HEM . B HEM 147 1_555 F N NPN . B NPN 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc6 E FE HEM . B HEM 147 1_555 F C NPN . B NPN 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? # _chem_comp.formula 'C4 H7 N' _chem_comp.formula_weight 69.105 _chem_comp.id NPN _chem_comp.mon_nstd_flag . _chem_comp.name 'N-PROPYL ISOCYANIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N NPN trip 298 n n N C1 NPN sing 299 n n C1 C2 NPN sing 300 n n C1 H11 NPN sing 301 n n C1 H12 NPN sing 302 n n C2 C3 NPN sing 303 n n C2 H21 NPN sing 304 n n C2 H22 NPN sing 305 n n C3 H31 NPN sing 306 n n C3 H32 NPN sing 307 n n C3 H33 NPN sing 308 n n # _atom_sites.entry_id 2HBF _atom_sites.fract_transf_matrix[1][1] 0.018501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 4 NPN A 1 143 143 NPN NPN . E 3 HEM B 1 147 147 HEM HEM . F 4 NPN B 1 148 148 NPN NPN . G 5 HOH A 1 157 157 HOH HOH . G 5 HOH A 2 158 158 HOH HOH . G 5 HOH A 3 161 161 HOH HOH . G 5 HOH A 4 167 167 HOH HOH . G 5 HOH A 5 169 169 HOH HOH . G 5 HOH A 6 186 186 HOH HOH . G 5 HOH A 7 205 205 HOH HOH . G 5 HOH A 8 206 206 HOH HOH . G 5 HOH A 9 209 209 HOH HOH . G 5 HOH A 10 216 216 HOH HOH . G 5 HOH A 11 245 245 HOH HOH . G 5 HOH A 12 246 246 HOH HOH . G 5 HOH A 13 247 247 HOH HOH . G 5 HOH A 14 251 251 HOH HOH . G 5 HOH A 15 255 255 HOH HOH . G 5 HOH A 16 266 266 HOH HOH . G 5 HOH A 17 360 360 HOH HOH . G 5 HOH A 18 364 364 HOH HOH . G 5 HOH A 19 365 365 HOH HOH . G 5 HOH A 20 412 412 HOH HOH . G 5 HOH A 21 414 414 HOH HOH . G 5 HOH A 22 458 458 HOH HOH . H 5 HOH B 1 152 152 HOH HOH . H 5 HOH B 2 156 156 HOH HOH . H 5 HOH B 3 162 162 HOH HOH . H 5 HOH B 4 163 163 HOH HOH . H 5 HOH B 5 165 165 HOH HOH . H 5 HOH B 6 166 166 HOH HOH . H 5 HOH B 7 173 173 HOH HOH . H 5 HOH B 8 213 213 HOH HOH . H 5 HOH B 9 219 219 HOH HOH . H 5 HOH B 10 229 229 HOH HOH . H 5 HOH B 11 232 232 HOH HOH . H 5 HOH B 12 237 237 HOH HOH . H 5 HOH B 13 238 238 HOH HOH . H 5 HOH B 14 241 241 HOH HOH . H 5 HOH B 15 248 248 HOH HOH . H 5 HOH B 16 259 259 HOH HOH . H 5 HOH B 17 263 263 HOH HOH . H 5 HOH B 18 265 265 HOH HOH . H 5 HOH B 19 268 268 HOH HOH . H 5 HOH B 20 269 269 HOH HOH . H 5 HOH B 21 271 271 HOH HOH . H 5 HOH B 22 273 273 HOH HOH . H 5 HOH B 23 358 358 HOH HOH . H 5 HOH B 24 361 361 HOH HOH . H 5 HOH B 25 363 363 HOH HOH . H 5 HOH B 26 366 366 HOH HOH . H 5 HOH B 27 408 408 HOH HOH . H 5 HOH B 28 410 410 HOH HOH . H 5 HOH B 29 415 415 HOH HOH . H 5 HOH B 30 416 416 HOH HOH . H 5 HOH B 31 459 459 HOH HOH . H 5 HOH B 32 465 465 HOH HOH . H 5 HOH B 33 559 559 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C NPN . . . D 4 40.068 29.307 16.602 1 24.73 ? C NPN 143 A 1 HETATM 2 N N NPN . . . D 4 39.013 29.336 16.992 1 27.2 ? N NPN 143 A 1 HETATM 3 C C1 NPN . . . D 4 38.363 28.581 17.972 1 24.57 ? C1 NPN 143 A 1 HETATM 4 C C2 NPN . . . D 4 37.024 28.062 17.481 1 30.13 ? C2 NPN 143 A 1 HETATM 5 C C3 NPN . . . D 4 36.66 28.556 16.093 1 28.62 ? C3 NPN 143 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #