data_2HBF
#
_model_server_result.job_id            0H-nbc0t80Lnt37WNIp9zw 
_model_server_result.datetime_utc      '2024-11-22 04:34:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":143}' 
#
_entry.id    2HBF 
#
_exptl.entry_id    2HBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.105 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-PROPYL ISOCYANIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HBF 
_cell.length_a            54.05 
_cell.length_b            54.05 
_cell.length_c            193.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C NPN . A NPN 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? 
metalc ? metalc3 C FE HEM . A HEM 142 1_555 D N NPN . A NPN 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc5 E FE HEM . B HEM 147 1_555 F N NPN . B NPN 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc6 E FE HEM . B HEM 147 1_555 F C NPN . B NPN 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? 
#
_chem_comp.formula           'C4 H7 N' 
_chem_comp.formula_weight    69.105 
_chem_comp.id                NPN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-PROPYL ISOCYANIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N NPN trip 298 n n 
N C1 NPN sing 299 n n 
C1 C2 NPN sing 300 n n 
C1 H11 NPN sing 301 n n 
C1 H12 NPN sing 302 n n 
C2 C3 NPN sing 303 n n 
C2 H21 NPN sing 304 n n 
C2 H22 NPN sing 305 n n 
C3 H31 NPN sing 306 n n 
C3 H32 NPN sing 307 n n 
C3 H33 NPN sing 308 n n 
#
_atom_sites.entry_id                     2HBF 
_atom_sites.fract_transf_matrix[1][1]    0.018501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018501 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 142 142 HEM HEM . 
D 4 NPN A 1 143 143 NPN NPN . 
E 3 HEM B 1 147 147 HEM HEM . 
F 4 NPN B 1 148 148 NPN NPN . 
G 5 HOH A 1 157 157 HOH HOH . 
G 5 HOH A 2 158 158 HOH HOH . 
G 5 HOH A 3 161 161 HOH HOH . 
G 5 HOH A 4 167 167 HOH HOH . 
G 5 HOH A 5 169 169 HOH HOH . 
G 5 HOH A 6 186 186 HOH HOH . 
G 5 HOH A 7 205 205 HOH HOH . 
G 5 HOH A 8 206 206 HOH HOH . 
G 5 HOH A 9 209 209 HOH HOH . 
G 5 HOH A 10 216 216 HOH HOH . 
G 5 HOH A 11 245 245 HOH HOH . 
G 5 HOH A 12 246 246 HOH HOH . 
G 5 HOH A 13 247 247 HOH HOH . 
G 5 HOH A 14 251 251 HOH HOH . 
G 5 HOH A 15 255 255 HOH HOH . 
G 5 HOH A 16 266 266 HOH HOH . 
G 5 HOH A 17 360 360 HOH HOH . 
G 5 HOH A 18 364 364 HOH HOH . 
G 5 HOH A 19 365 365 HOH HOH . 
G 5 HOH A 20 412 412 HOH HOH . 
G 5 HOH A 21 414 414 HOH HOH . 
G 5 HOH A 22 458 458 HOH HOH . 
H 5 HOH B 1 152 152 HOH HOH . 
H 5 HOH B 2 156 156 HOH HOH . 
H 5 HOH B 3 162 162 HOH HOH . 
H 5 HOH B 4 163 163 HOH HOH . 
H 5 HOH B 5 165 165 HOH HOH . 
H 5 HOH B 6 166 166 HOH HOH . 
H 5 HOH B 7 173 173 HOH HOH . 
H 5 HOH B 8 213 213 HOH HOH . 
H 5 HOH B 9 219 219 HOH HOH . 
H 5 HOH B 10 229 229 HOH HOH . 
H 5 HOH B 11 232 232 HOH HOH . 
H 5 HOH B 12 237 237 HOH HOH . 
H 5 HOH B 13 238 238 HOH HOH . 
H 5 HOH B 14 241 241 HOH HOH . 
H 5 HOH B 15 248 248 HOH HOH . 
H 5 HOH B 16 259 259 HOH HOH . 
H 5 HOH B 17 263 263 HOH HOH . 
H 5 HOH B 18 265 265 HOH HOH . 
H 5 HOH B 19 268 268 HOH HOH . 
H 5 HOH B 20 269 269 HOH HOH . 
H 5 HOH B 21 271 271 HOH HOH . 
H 5 HOH B 22 273 273 HOH HOH . 
H 5 HOH B 23 358 358 HOH HOH . 
H 5 HOH B 24 361 361 HOH HOH . 
H 5 HOH B 25 363 363 HOH HOH . 
H 5 HOH B 26 366 366 HOH HOH . 
H 5 HOH B 27 408 408 HOH HOH . 
H 5 HOH B 28 410 410 HOH HOH . 
H 5 HOH B 29 415 415 HOH HOH . 
H 5 HOH B 30 416 416 HOH HOH . 
H 5 HOH B 31 459 459 HOH HOH . 
H 5 HOH B 32 465 465 HOH HOH . 
H 5 HOH B 33 559 559 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C NPN . . . D 4 40.068 29.307 16.602 1 24.73 ? C NPN 143 A 1 
HETATM 2 N N NPN . . . D 4 39.013 29.336 16.992 1 27.2 ? N NPN 143 A 1 
HETATM 3 C C1 NPN . . . D 4 38.363 28.581 17.972 1 24.57 ? C1 NPN 143 A 1 
HETATM 4 C C2 NPN . . . D 4 37.024 28.062 17.481 1 30.13 ? C2 NPN 143 A 1 
HETATM 5 C C3 NPN . . . D 4 36.66 28.556 16.093 1 28.62 ? C3 NPN 143 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#