data_2HBG # _model_server_result.job_id xlPx9jJ4HjfysuALegZo4w _model_server_result.datetime_utc '2024-10-14 07:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":148}' # _entry.id 2HBG # _exptl.entry_id 2HBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HBG _cell.length_a 42.75 _cell.length_b 83.15 _cell.length_c 38.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 90 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 148 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.172 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2HBG _atom_sites.fract_transf_matrix[1][1] 0.023392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 148 148 HEM HEM . C 3 HOH A 1 149 1 HOH HOH . C 3 HOH A 2 150 2 HOH HOH . C 3 HOH A 3 151 3 HOH HOH . C 3 HOH A 4 152 4 HOH HOH . C 3 HOH A 5 153 5 HOH HOH . C 3 HOH A 6 154 6 HOH HOH . C 3 HOH A 7 155 7 HOH HOH . C 3 HOH A 8 156 8 HOH HOH . C 3 HOH A 9 157 9 HOH HOH . C 3 HOH A 10 158 10 HOH HOH . C 3 HOH A 11 159 11 HOH HOH . C 3 HOH A 12 160 12 HOH HOH . C 3 HOH A 13 161 13 HOH HOH . C 3 HOH A 14 162 14 HOH HOH . C 3 HOH A 15 163 15 HOH HOH . C 3 HOH A 16 164 16 HOH HOH . C 3 HOH A 17 165 17 HOH HOH . C 3 HOH A 18 166 18 HOH HOH . C 3 HOH A 19 167 19 HOH HOH . C 3 HOH A 20 168 20 HOH HOH . C 3 HOH A 21 169 21 HOH HOH . C 3 HOH A 22 170 22 HOH HOH . C 3 HOH A 23 171 23 HOH HOH . C 3 HOH A 24 172 24 HOH HOH . C 3 HOH A 25 173 25 HOH HOH . C 3 HOH A 26 174 26 HOH HOH . C 3 HOH A 27 175 27 HOH HOH . C 3 HOH A 28 176 28 HOH HOH . C 3 HOH A 29 177 29 HOH HOH . C 3 HOH A 30 178 30 HOH HOH . C 3 HOH A 31 179 31 HOH HOH . C 3 HOH A 32 180 32 HOH HOH . C 3 HOH A 33 181 33 HOH HOH . C 3 HOH A 34 182 34 HOH HOH . C 3 HOH A 35 183 35 HOH HOH . C 3 HOH A 36 184 36 HOH HOH . C 3 HOH A 37 185 37 HOH HOH . C 3 HOH A 38 186 38 HOH HOH . C 3 HOH A 39 187 39 HOH HOH . C 3 HOH A 40 188 40 HOH HOH . C 3 HOH A 41 189 41 HOH HOH . C 3 HOH A 42 190 42 HOH HOH . C 3 HOH A 43 191 43 HOH HOH . C 3 HOH A 44 192 44 HOH HOH . C 3 HOH A 45 193 45 HOH HOH . C 3 HOH A 46 194 46 HOH HOH . C 3 HOH A 47 195 47 HOH HOH . C 3 HOH A 48 196 48 HOH HOH . C 3 HOH A 49 197 49 HOH HOH . C 3 HOH A 50 198 50 HOH HOH . C 3 HOH A 51 199 51 HOH HOH . C 3 HOH A 52 200 52 HOH HOH . C 3 HOH A 53 201 53 HOH HOH . C 3 HOH A 54 202 54 HOH HOH . C 3 HOH A 55 203 55 HOH HOH . C 3 HOH A 56 204 56 HOH HOH . C 3 HOH A 57 205 57 HOH HOH . C 3 HOH A 58 206 58 HOH HOH . C 3 HOH A 59 207 59 HOH HOH . C 3 HOH A 60 208 60 HOH HOH . C 3 HOH A 61 209 61 HOH HOH . C 3 HOH A 62 210 62 HOH HOH . C 3 HOH A 63 211 63 HOH HOH . C 3 HOH A 64 212 64 HOH HOH . C 3 HOH A 65 213 65 HOH HOH . C 3 HOH A 66 214 66 HOH HOH . C 3 HOH A 67 215 67 HOH HOH . C 3 HOH A 68 216 68 HOH HOH . C 3 HOH A 69 217 69 HOH HOH . C 3 HOH A 70 218 70 HOH HOH . C 3 HOH A 71 219 71 HOH HOH . C 3 HOH A 72 220 72 HOH HOH . C 3 HOH A 73 221 73 HOH HOH . C 3 HOH A 74 222 74 HOH HOH . C 3 HOH A 75 223 75 HOH HOH . C 3 HOH A 76 224 76 HOH HOH . C 3 HOH A 77 225 77 HOH HOH . C 3 HOH A 78 226 78 HOH HOH . C 3 HOH A 79 227 79 HOH HOH . C 3 HOH A 80 228 80 HOH HOH . C 3 HOH A 81 229 81 HOH HOH . C 3 HOH A 82 230 82 HOH HOH . C 3 HOH A 83 231 83 HOH HOH . C 3 HOH A 84 232 84 HOH HOH . C 3 HOH A 85 233 85 HOH HOH . C 3 HOH A 86 234 86 HOH HOH . C 3 HOH A 87 235 87 HOH HOH . C 3 HOH A 88 236 88 HOH HOH . C 3 HOH A 89 237 89 HOH HOH . C 3 HOH A 90 238 90 HOH HOH . C 3 HOH A 91 239 91 HOH HOH . C 3 HOH A 92 240 92 HOH HOH . C 3 HOH A 93 241 93 HOH HOH . C 3 HOH A 94 242 94 HOH HOH . C 3 HOH A 95 243 95 HOH HOH . C 3 HOH A 96 244 96 HOH HOH . C 3 HOH A 97 245 97 HOH HOH . C 3 HOH A 98 246 98 HOH HOH . C 3 HOH A 99 247 99 HOH HOH . C 3 HOH A 100 248 100 HOH HOH . C 3 HOH A 101 249 101 HOH HOH . C 3 HOH A 102 250 102 HOH HOH . C 3 HOH A 103 251 103 HOH HOH . C 3 HOH A 104 252 104 HOH HOH . C 3 HOH A 105 253 105 HOH HOH . C 3 HOH A 106 254 106 HOH HOH . C 3 HOH A 107 255 107 HOH HOH . C 3 HOH A 108 256 108 HOH HOH . C 3 HOH A 109 257 109 HOH HOH . C 3 HOH A 110 258 110 HOH HOH . C 3 HOH A 111 259 111 HOH HOH . C 3 HOH A 112 260 112 HOH HOH . C 3 HOH A 113 261 113 HOH HOH . C 3 HOH A 114 262 114 HOH HOH . C 3 HOH A 115 263 115 HOH HOH . C 3 HOH A 116 264 116 HOH HOH . C 3 HOH A 117 265 117 HOH HOH . C 3 HOH A 118 266 118 HOH HOH . C 3 HOH A 119 267 119 HOH HOH . C 3 HOH A 120 268 120 HOH HOH . C 3 HOH A 121 269 121 HOH HOH . C 3 HOH A 122 270 122 HOH HOH . C 3 HOH A 123 271 123 HOH HOH . C 3 HOH A 124 272 124 HOH HOH . C 3 HOH A 125 273 125 HOH HOH . C 3 HOH A 126 274 126 HOH HOH . C 3 HOH A 127 275 127 HOH HOH . C 3 HOH A 128 276 128 HOH HOH . C 3 HOH A 129 277 129 HOH HOH . C 3 HOH A 130 278 130 HOH HOH . C 3 HOH A 131 279 131 HOH HOH . C 3 HOH A 132 280 132 HOH HOH . C 3 HOH A 133 281 133 HOH HOH . C 3 HOH A 134 282 134 HOH HOH . C 3 HOH A 135 283 135 HOH HOH . C 3 HOH A 136 284 136 HOH HOH . C 3 HOH A 137 285 137 HOH HOH . C 3 HOH A 138 286 138 HOH HOH . C 3 HOH A 139 287 139 HOH HOH . C 3 HOH A 140 288 140 HOH HOH . C 3 HOH A 141 289 141 HOH HOH . C 3 HOH A 142 290 142 HOH HOH . C 3 HOH A 143 291 143 HOH HOH . C 3 HOH A 144 292 144 HOH HOH . C 3 HOH A 145 293 145 HOH HOH . C 3 HOH A 146 294 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 2.83 10.264 -0.143 1 11.43 ? CHA HEM 148 A 1 HETATM 2 C CHB HEM . . . B 2 0.887 7.927 3.568 1 10.96 ? CHB HEM 148 A 1 HETATM 3 C CHC HEM . . . B 2 3.011 10.958 6.683 1 9.93 ? CHC HEM 148 A 1 HETATM 4 C CHD HEM . . . B 2 4.748 13.457 2.92 1 10.42 ? CHD HEM 148 A 1 HETATM 5 C C1A HEM . . . B 2 2.185 9.33 0.613 1 11.88 ? C1A HEM 148 A 1 HETATM 6 C C2A HEM . . . B 2 1.547 8.091 0.052 1 12.95 ? C2A HEM 148 A 1 HETATM 7 C C3A HEM . . . B 2 0.928 7.51 1.076 1 12.32 ? C3A HEM 148 A 1 HETATM 8 C C4A HEM . . . B 2 1.18 8.285 2.283 1 11.48 ? C4A HEM 148 A 1 HETATM 9 C CMA HEM . . . B 2 0.103 6.21 1.053 1 13.29 ? CMA HEM 148 A 1 HETATM 10 C CAA HEM . . . B 2 1.306 7.982 -1.458 1 14.92 ? CAA HEM 148 A 1 HETATM 11 C CBA HEM . . . B 2 2.079 7.123 -2.398 0.8 17.16 ? CBA HEM 148 A 1 HETATM 12 C CGA HEM . . . B 2 1.426 7.109 -3.815 0.7 18.3 ? CGA HEM 148 A 1 HETATM 13 O O1A HEM . . . B 2 0.256 6.557 -3.811 0.7 19.02 ? O1A HEM 148 A 1 HETATM 14 O O2A HEM . . . B 2 1.432 8.31 -4.326 0.7 19.44 ? O2A HEM 148 A 1 HETATM 15 C C1B HEM . . . B 2 1.125 8.638 4.733 1 10.58 ? C1B HEM 148 A 1 HETATM 16 C C2B HEM . . . B 2 0.858 8.142 6.067 1 10.14 ? C2B HEM 148 A 1 HETATM 17 C C3B HEM . . . B 2 1.547 8.884 6.932 1 10.4 ? C3B HEM 148 A 1 HETATM 18 C C4B HEM . . . B 2 2.291 9.887 6.132 1 10.46 ? C4B HEM 148 A 1 HETATM 19 C CMB HEM . . . B 2 -0.018 6.901 6.364 1 10.3 ? CMB HEM 148 A 1 HETATM 20 C CAB HEM . . . B 2 1.436 8.973 8.453 1 10.44 ? CAB HEM 148 A 1 HETATM 21 C CBB HEM . . . B 2 1.41 7.792 9.147 1 11.43 ? CBB HEM 148 A 1 HETATM 22 C C1C HEM . . . B 2 3.612 11.95 5.934 1 9.35 ? C1C HEM 148 A 1 HETATM 23 C C2C HEM . . . B 2 4.588 12.909 6.453 1 9.94 ? C2C HEM 148 A 1 HETATM 24 C C3C HEM . . . B 2 5.009 13.645 5.425 1 9.89 ? C3C HEM 148 A 1 HETATM 25 C C4C HEM . . . B 2 4.368 13.1 4.219 1 9.98 ? C4C HEM 148 A 1 HETATM 26 C CMC HEM . . . B 2 4.725 13.242 7.973 1 10.3 ? CMC HEM 148 A 1 HETATM 27 C CAC HEM . . . B 2 5.913 14.873 5.367 1 10.07 ? CAC HEM 148 A 1 HETATM 28 C CBC HEM . . . B 2 6.266 15.552 6.409 1 11.64 ? CBC HEM 148 A 1 HETATM 29 C C1D HEM . . . B 2 4.43 12.795 1.777 1 11.31 ? C1D HEM 148 A 1 HETATM 30 C C2D HEM . . . B 2 4.848 13.145 0.417 1 11.68 ? C2D HEM 148 A 1 HETATM 31 C C3D HEM . . . B 2 4.494 12.117 -0.382 1 11.67 ? C3D HEM 148 A 1 HETATM 32 C C4D HEM . . . B 2 3.562 11.313 0.39 1 11.43 ? C4D HEM 148 A 1 HETATM 33 C CMD HEM . . . B 2 5.831 14.281 0.083 1 11.22 ? CMD HEM 148 A 1 HETATM 34 C CAD HEM . . . B 2 4.629 12.052 -1.912 1 12.96 ? CAD HEM 148 A 1 HETATM 35 C CBD HEM . . . B 2 3.457 12.518 -2.764 1 13.88 ? CBD HEM 148 A 1 HETATM 36 C CGD HEM . . . B 2 3.082 13.943 -2.745 1 15.17 ? CGD HEM 148 A 1 HETATM 37 O O1D HEM . . . B 2 1.873 14.278 -2.441 1 15.96 ? O1D HEM 148 A 1 HETATM 38 O O2D HEM . . . B 2 4.01 14.841 -2.535 1 16.36 ? O2D HEM 148 A 1 HETATM 39 N NA HEM . . . B 2 1.955 9.377 1.976 1 11.19 ? NA HEM 148 A 1 HETATM 40 N NB HEM . . . B 2 2.133 9.606 4.803 1 10.37 ? NB HEM 148 A 1 HETATM 41 N NC HEM . . . B 2 3.721 11.944 4.576 1 10.02 ? NC HEM 148 A 1 HETATM 42 N ND HEM . . . B 2 3.653 11.614 1.723 1 10.72 ? ND HEM 148 A 1 HETATM 43 FE FE HEM . . . B 2 2.63 10.795 3.235 1 10.52 ? FE HEM 148 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #