data_2HBH
#
_model_server_result.job_id            zDSsLA6TjOdNOEGeNnaEIg 
_model_server_result.datetime_utc      '2025-02-05 12:52:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hbh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    2HBH 
#
_exptl.entry_id    2HBH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              394.546 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,3-CYCLOHEXANEDIOL,4-METHYLENE-5-[(2E)-[(1S,3AS,7AS)-OCTAHYDRO-1-(5-HYDROXY-5-METHYL-1,3-HEXADIYNYL)-7A-METHYL-4H-INDEN-4-YLIDENE]ETHYLIDENE]-,(1R,3S,5Z) 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2HBH 
_cell.length_a            65.682 
_cell.length_b            65.682 
_cell.length_c            265.096 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HBH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 32.841 56.882281 44.182667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H34 O3' 
_chem_comp.formula_weight    394.546 
_chem_comp.id                XE4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,3-CYCLOHEXANEDIOL, 4-METHYLENE-5-[(2E)-[(1S,3AS,7AS)-OCTAHYDRO-1-(5-HYDROXY-5-METHYL-1,3-HEXADIYNYL)-7A-METHYL-4H-INDEN-4-YLIDENE]ETHYLIDENE]-, (1R,3S,5Z)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     21-NOR-CALCITRIOL-20(22),23-DIYNE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 XE4 sing 376 n n 
C1 C6 XE4 sing 377 n n 
C1 H11A XE4 sing 378 n n 
C1 H12 XE4 sing 379 n n 
C2 C3 XE4 sing 380 n n 
C2 O1 XE4 sing 381 n n 
C2 H2 XE4 sing 382 n n 
C3 C4 XE4 sing 383 n n 
C3 H31 XE4 sing 384 n n 
C3 H32 XE4 sing 385 n n 
C4 C5 XE4 sing 386 n n 
C4 O2 XE4 sing 387 n n 
C4 H4 XE4 sing 388 n n 
C5 C6 XE4 sing 389 n n 
C5 C10 XE4 doub 390 n n 
C6 C7 XE4 doub 391 z n 
C7 C8 XE4 sing 392 n n 
C7 H7 XE4 sing 393 n n 
C8 C9 XE4 doub 394 e n 
C8 H8 XE4 sing 395 n n 
C9 C11 XE4 sing 396 n n 
C9 C15 XE4 sing 397 n n 
C10 H101 XE4 sing 398 n n 
C10 H102 XE4 sing 399 n n 
O1 HO1 XE4 sing 400 n n 
O2 HO2 XE4 sing 401 n n 
C11 C12 XE4 sing 402 n n 
C11 C16 XE4 sing 403 n n 
C11 H11 XE4 sing 404 n n 
C12 C13 XE4 sing 405 n n 
C12 C18 XE4 sing 406 n n 
C12 C26 XE4 sing 407 n n 
C13 C14 XE4 sing 408 n n 
C13 H131 XE4 sing 409 n n 
C13 H132 XE4 sing 410 n n 
C14 C15 XE4 sing 411 n n 
C14 H141 XE4 sing 412 n n 
C14 H142 XE4 sing 413 n n 
C15 H151 XE4 sing 414 n n 
C15 H152 XE4 sing 415 n n 
C16 C17 XE4 sing 416 n n 
C16 H161 XE4 sing 417 n n 
C16 H162 XE4 sing 418 n n 
C17 C18 XE4 sing 419 n n 
C17 H171 XE4 sing 420 n n 
C17 H172 XE4 sing 421 n n 
C18 C19 XE4 sing 422 n n 
C18 H18 XE4 sing 423 n n 
C19 C20 XE4 trip 424 n n 
C20 C21 XE4 sing 425 n n 
C21 C22 XE4 trip 426 n n 
C22 C23 XE4 sing 427 n n 
C23 C24 XE4 sing 428 n n 
C23 O3 XE4 sing 429 n n 
C23 C25 XE4 sing 430 n n 
C24 H241 XE4 sing 431 n n 
C24 H242 XE4 sing 432 n n 
C24 H243 XE4 sing 433 n n 
O3 HO3 XE4 sing 434 n n 
C25 H251 XE4 sing 435 n n 
C25 H252 XE4 sing 436 n n 
C25 H253 XE4 sing 437 n n 
C26 H261 XE4 sing 438 n n 
C26 H262 XE4 sing 439 n n 
C26 H263 XE4 sing 440 n n 
#
_atom_sites.entry_id                     2HBH 
_atom_sites.fract_transf_matrix[1][1]    0.015225 
_atom_sites.fract_transf_matrix[1][2]    0.00879 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01758 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003772 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 XE4 A 1 500 500 XE4 XE4 . 
D 4 HOH A 1 1 1 HOH TIP . 
D 4 HOH A 2 2 2 HOH TIP . 
D 4 HOH A 3 3 3 HOH TIP . 
D 4 HOH A 4 4 4 HOH TIP . 
D 4 HOH A 5 5 5 HOH TIP . 
D 4 HOH A 6 6 6 HOH TIP . 
D 4 HOH A 7 7 7 HOH TIP . 
D 4 HOH A 8 8 8 HOH TIP . 
D 4 HOH A 9 10 10 HOH TIP . 
D 4 HOH A 10 11 11 HOH TIP . 
D 4 HOH A 11 12 12 HOH TIP . 
D 4 HOH A 12 13 13 HOH TIP . 
D 4 HOH A 13 14 14 HOH TIP . 
D 4 HOH A 14 15 15 HOH TIP . 
D 4 HOH A 15 16 16 HOH TIP . 
D 4 HOH A 16 17 17 HOH TIP . 
D 4 HOH A 17 18 18 HOH TIP . 
D 4 HOH A 18 19 19 HOH TIP . 
D 4 HOH A 19 20 20 HOH TIP . 
D 4 HOH A 20 21 21 HOH TIP . 
D 4 HOH A 21 22 22 HOH TIP . 
D 4 HOH A 22 24 24 HOH TIP . 
D 4 HOH A 23 25 25 HOH TIP . 
D 4 HOH A 24 26 26 HOH TIP . 
D 4 HOH A 25 27 27 HOH TIP . 
D 4 HOH A 26 28 28 HOH TIP . 
D 4 HOH A 27 30 30 HOH TIP . 
D 4 HOH A 28 31 31 HOH TIP . 
D 4 HOH A 29 32 32 HOH TIP . 
D 4 HOH A 30 33 33 HOH TIP . 
D 4 HOH A 31 35 35 HOH TIP . 
D 4 HOH A 32 36 36 HOH TIP . 
D 4 HOH A 33 37 37 HOH TIP . 
D 4 HOH A 34 38 38 HOH TIP . 
D 4 HOH A 35 39 39 HOH TIP . 
D 4 HOH A 36 40 40 HOH TIP . 
D 4 HOH A 37 41 41 HOH TIP . 
D 4 HOH A 38 42 42 HOH TIP . 
D 4 HOH A 39 43 43 HOH TIP . 
D 4 HOH A 40 44 44 HOH TIP . 
D 4 HOH A 41 45 45 HOH TIP . 
D 4 HOH A 42 46 46 HOH TIP . 
D 4 HOH A 43 47 47 HOH TIP . 
D 4 HOH A 44 48 48 HOH TIP . 
D 4 HOH A 45 49 49 HOH TIP . 
D 4 HOH A 46 50 50 HOH TIP . 
D 4 HOH A 47 51 51 HOH TIP . 
D 4 HOH A 48 52 52 HOH TIP . 
D 4 HOH A 49 53 53 HOH TIP . 
D 4 HOH A 50 54 54 HOH TIP . 
D 4 HOH A 51 55 55 HOH TIP . 
D 4 HOH A 52 56 56 HOH TIP . 
D 4 HOH A 53 57 57 HOH TIP . 
D 4 HOH A 54 58 58 HOH TIP . 
D 4 HOH A 55 59 59 HOH TIP . 
D 4 HOH A 56 60 60 HOH TIP . 
D 4 HOH A 57 61 61 HOH TIP . 
D 4 HOH A 58 62 62 HOH TIP . 
D 4 HOH A 59 63 63 HOH TIP . 
D 4 HOH A 60 64 64 HOH TIP . 
D 4 HOH A 61 65 65 HOH TIP . 
D 4 HOH A 62 66 66 HOH TIP . 
D 4 HOH A 63 67 67 HOH TIP . 
D 4 HOH A 64 69 69 HOH TIP . 
D 4 HOH A 65 70 70 HOH TIP . 
D 4 HOH A 66 71 71 HOH TIP . 
D 4 HOH A 67 72 72 HOH TIP . 
D 4 HOH A 68 73 73 HOH TIP . 
D 4 HOH A 69 74 74 HOH TIP . 
E 4 HOH B 1 9 9 HOH TIP . 
E 4 HOH B 2 23 23 HOH TIP . 
E 4 HOH B 3 29 29 HOH TIP . 
E 4 HOH B 4 34 34 HOH TIP . 
E 4 HOH B 5 68 68 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XE4 . . . C 3 0.003 38.816 38.454 1 26.49 ? C1 XE4 500 A 1 
HETATM 2 C C2 XE4 . . . C 3 0.728 40.025 39.101 1 36.45 ? C2 XE4 500 A 1 
HETATM 3 C C3 XE4 . . . C 3 2.208 40.143 38.657 1 31.07 ? C3 XE4 500 A 1 
HETATM 4 C C4 XE4 . . . C 3 3.008 38.845 38.926 1 50.59 ? C4 XE4 500 A 1 
HETATM 5 C C5 XE4 . . . C 3 2.284 37.61 38.356 1 44.59 ? C5 XE4 500 A 1 
HETATM 6 C C6 XE4 . . . C 3 0.789 37.513 38.646 1 47.91 ? C6 XE4 500 A 1 
HETATM 7 C C7 XE4 . . . C 3 0.117 36.396 39.089 1 40.97 ? C7 XE4 500 A 1 
HETATM 8 C C8 XE4 . . . C 3 0.693 35.058 39.32 1 43.3 ? C8 XE4 500 A 1 
HETATM 9 C C9 XE4 . . . C 3 0.14 33.871 38.972 1 39.53 ? C9 XE4 500 A 1 
HETATM 10 C C10 XE4 . . . C 3 2.952 36.702 37.598 1 57.17 ? C10 XE4 500 A 1 
HETATM 11 O O1 XE4 . . . C 3 0.683 39.883 40.525 1 29.83 ? O1 XE4 500 A 1 
HETATM 12 O O2 XE4 . . . C 3 4.311 38.958 38.325 1 52.25 ? O2 XE4 500 A 1 
HETATM 13 C C11 XE4 . . . C 3 0.837 32.535 39.224 1 49.58 ? C11 XE4 500 A 1 
HETATM 14 C C12 XE4 . . . C 3 1.146 31.854 37.848 1 46.83 ? C12 XE4 500 A 1 
HETATM 15 C C13 XE4 . . . C 3 -0.231 31.531 37.168 1 43.12 ? C13 XE4 500 A 1 
HETATM 16 C C14 XE4 . . . C 3 -1.169 32.78 37.013 1 43.4 ? C14 XE4 500 A 1 
HETATM 17 C C15 XE4 . . . C 3 -1.222 33.718 38.261 1 47.88 ? C15 XE4 500 A 1 
HETATM 18 C C16 XE4 . . . C 3 2.213 32.481 39.964 1 45.43 ? C16 XE4 500 A 1 
HETATM 19 C C17 XE4 . . . C 3 2.905 31.199 39.416 1 42.55 ? C17 XE4 500 A 1 
HETATM 20 C C18 XE4 . . . C 3 1.972 30.627 38.321 1 41.2 ? C18 XE4 500 A 1 
HETATM 21 C C19 XE4 . . . C 3 2.708 29.972 37.204 1 47.98 ? C19 XE4 500 A 1 
HETATM 22 C C20 XE4 . . . C 3 3.3 29.453 36.277 1 43.48 ? C20 XE4 500 A 1 
HETATM 23 C C21 XE4 . . . C 3 3.966 28.876 35.207 1 49.06 ? C21 XE4 500 A 1 
HETATM 24 C C22 XE4 . . . C 3 4.542 28.375 34.265 1 54.83 ? C22 XE4 500 A 1 
HETATM 25 C C23 XE4 . . . C 3 5.237 27.763 33.122 1 56.69 ? C23 XE4 500 A 1 
HETATM 26 C C24 XE4 . . . C 3 4.222 27.442 32.022 1 46.23 ? C24 XE4 500 A 1 
HETATM 27 O O3 XE4 . . . C 3 5.845 26.556 33.57 1 56.26 ? O3 XE4 500 A 1 
HETATM 28 C C25 XE4 . . . C 3 6.334 28.696 32.602 1 51.95 ? C25 XE4 500 A 1 
HETATM 29 C C26 XE4 . . . C 3 2.009 32.768 36.863 1 37.21 ? C26 XE4 500 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#