data_2HC4
#
_model_server_result.job_id            ZpAuE0yfyGtJByS6A-gk-A 
_model_server_result.datetime_utc      '2024-10-11 13:31:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hc4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":525}' 
#
_entry.id    2HC4 
#
_exptl.entry_id    2HC4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              416.636 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2HC4 
_cell.length_a            65.835 
_cell.length_b            65.835 
_cell.length_c            264.839 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HC4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 32.9175 57.014782 44.139833 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H44 O3' 
_chem_comp.formula_weight    416.636 
_chem_comp.id                VDX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,25 DIHYDROXY VITAMIN D3' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C3 VDX sing 376 n n 
O2 HO2 VDX sing 377 n n 
O3 C25 VDX sing 378 n n 
O3 HO3 VDX sing 379 n n 
C1 C2 VDX sing 380 n n 
C1 C10 VDX sing 381 n n 
C1 O1 VDX sing 382 n n 
C1 H11 VDX sing 383 n n 
C2 C3 VDX sing 384 n n 
C2 H21 VDX sing 385 n n 
C2 H22 VDX sing 386 n n 
C3 C4 VDX sing 387 n n 
C3 H31 VDX sing 388 n n 
C4 C5 VDX sing 389 n n 
C4 H41 VDX sing 390 n n 
C4 H42 VDX sing 391 n n 
C5 C6 VDX doub 392 z n 
C5 C10 VDX sing 393 n n 
C6 C7 VDX sing 394 n n 
C6 H61 VDX sing 395 n n 
C7 C8 VDX doub 396 e n 
C7 H71 VDX sing 397 n n 
C8 C9 VDX sing 398 n n 
C8 C14 VDX sing 399 n n 
C9 C11 VDX sing 400 n n 
C9 H91 VDX sing 401 n n 
C9 H92 VDX sing 402 n n 
C10 C19 VDX doub 403 n n 
C11 C12 VDX sing 404 n n 
C11 H111 VDX sing 405 n n 
C11 H112 VDX sing 406 n n 
C12 C13 VDX sing 407 n n 
C12 H121 VDX sing 408 n n 
C12 H122 VDX sing 409 n n 
C13 C14 VDX sing 410 n n 
C13 C17 VDX sing 411 n n 
C13 C18 VDX sing 412 n n 
C14 C15 VDX sing 413 n n 
C14 H141 VDX sing 414 n n 
C15 C16 VDX sing 415 n n 
C15 H151 VDX sing 416 n n 
C15 H152 VDX sing 417 n n 
C16 C17 VDX sing 418 n n 
C16 H161 VDX sing 419 n n 
C16 H162 VDX sing 420 n n 
C17 C20 VDX sing 421 n n 
C17 H171 VDX sing 422 n n 
C18 H181 VDX sing 423 n n 
C18 H182 VDX sing 424 n n 
C18 H183 VDX sing 425 n n 
C19 H191 VDX sing 426 n n 
C19 H192 VDX sing 427 n n 
C20 C21 VDX sing 428 n n 
C20 C22 VDX sing 429 n n 
C20 H201 VDX sing 430 n n 
C21 H211 VDX sing 431 n n 
C21 H212 VDX sing 432 n n 
C21 H213 VDX sing 433 n n 
C22 C23 VDX sing 434 n n 
C22 H221 VDX sing 435 n n 
C22 H222 VDX sing 436 n n 
C23 C24 VDX sing 437 n n 
C23 H231 VDX sing 438 n n 
C23 H232 VDX sing 439 n n 
C24 C25 VDX sing 440 n n 
C24 H241 VDX sing 441 n n 
C24 H242 VDX sing 442 n n 
C25 C26 VDX sing 443 n n 
C25 C27 VDX sing 444 n n 
C26 H261 VDX sing 445 n n 
C26 H262 VDX sing 446 n n 
C26 H263 VDX sing 447 n n 
C27 H271 VDX sing 448 n n 
C27 H272 VDX sing 449 n n 
C27 H273 VDX sing 450 n n 
O1 HO1 VDX sing 451 n n 
#
_atom_sites.entry_id                     2HC4 
_atom_sites.fract_transf_matrix[1][1]    0.015189 
_atom_sites.fract_transf_matrix[1][2]    0.00877 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003776 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VDX A 1 525 525 VDX VDX . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 4 4 HOH HOH . 
D 4 HOH A 3 5 5 HOH HOH . 
D 4 HOH A 4 6 6 HOH HOH . 
D 4 HOH A 5 7 7 HOH HOH . 
D 4 HOH A 6 8 8 HOH HOH . 
D 4 HOH A 7 9 9 HOH HOH . 
D 4 HOH A 8 10 10 HOH HOH . 
D 4 HOH A 9 11 11 HOH HOH . 
D 4 HOH A 10 12 12 HOH HOH . 
D 4 HOH A 11 14 14 HOH HOH . 
D 4 HOH A 12 15 15 HOH HOH . 
D 4 HOH A 13 16 16 HOH HOH . 
D 4 HOH A 14 17 17 HOH HOH . 
D 4 HOH A 15 18 18 HOH HOH . 
D 4 HOH A 16 19 19 HOH HOH . 
D 4 HOH A 17 21 21 HOH HOH . 
D 4 HOH A 18 22 22 HOH HOH . 
D 4 HOH A 19 23 23 HOH HOH . 
D 4 HOH A 20 24 24 HOH HOH . 
D 4 HOH A 21 25 25 HOH HOH . 
D 4 HOH A 22 26 26 HOH HOH . 
D 4 HOH A 23 27 27 HOH HOH . 
D 4 HOH A 24 28 28 HOH HOH . 
D 4 HOH A 25 31 31 HOH HOH . 
D 4 HOH A 26 32 32 HOH HOH . 
D 4 HOH A 27 33 33 HOH HOH . 
D 4 HOH A 28 35 35 HOH HOH . 
D 4 HOH A 29 37 37 HOH HOH . 
D 4 HOH A 30 38 38 HOH HOH . 
D 4 HOH A 31 39 39 HOH HOH . 
D 4 HOH A 32 40 40 HOH HOH . 
D 4 HOH A 33 41 41 HOH HOH . 
D 4 HOH A 34 42 42 HOH HOH . 
D 4 HOH A 35 43 43 HOH HOH . 
D 4 HOH A 36 44 44 HOH HOH . 
D 4 HOH A 37 45 45 HOH HOH . 
D 4 HOH A 38 46 46 HOH HOH . 
D 4 HOH A 39 47 47 HOH HOH . 
D 4 HOH A 40 48 48 HOH HOH . 
D 4 HOH A 41 49 49 HOH HOH . 
D 4 HOH A 42 50 50 HOH HOH . 
D 4 HOH A 43 51 51 HOH HOH . 
D 4 HOH A 44 52 52 HOH HOH . 
D 4 HOH A 45 53 53 HOH HOH . 
D 4 HOH A 46 54 54 HOH HOH . 
D 4 HOH A 47 55 55 HOH HOH . 
D 4 HOH A 48 56 56 HOH HOH . 
D 4 HOH A 49 58 58 HOH HOH . 
D 4 HOH A 50 60 60 HOH HOH . 
D 4 HOH A 51 61 61 HOH HOH . 
D 4 HOH A 52 62 62 HOH HOH . 
D 4 HOH A 53 63 63 HOH HOH . 
D 4 HOH A 54 64 64 HOH HOH . 
D 4 HOH A 55 65 65 HOH HOH . 
D 4 HOH A 56 67 67 HOH HOH . 
D 4 HOH A 57 68 68 HOH HOH . 
D 4 HOH A 58 69 69 HOH HOH . 
D 4 HOH A 59 70 70 HOH HOH . 
D 4 HOH A 60 71 71 HOH HOH . 
D 4 HOH A 61 72 72 HOH HOH . 
D 4 HOH A 62 73 73 HOH HOH . 
D 4 HOH A 63 74 74 HOH HOH . 
D 4 HOH A 64 75 75 HOH HOH . 
D 4 HOH A 65 76 76 HOH HOH . 
D 4 HOH A 66 77 77 HOH HOH . 
D 4 HOH A 67 78 78 HOH HOH . 
D 4 HOH A 68 80 80 HOH HOH . 
D 4 HOH A 69 81 81 HOH HOH . 
D 4 HOH A 70 82 82 HOH HOH . 
D 4 HOH A 71 83 83 HOH HOH . 
D 4 HOH A 72 84 84 HOH HOH . 
D 4 HOH A 73 86 86 HOH HOH . 
D 4 HOH A 74 87 87 HOH HOH . 
D 4 HOH A 75 88 88 HOH HOH . 
D 4 HOH A 76 89 89 HOH HOH . 
D 4 HOH A 77 90 90 HOH HOH . 
D 4 HOH A 78 91 91 HOH HOH . 
D 4 HOH A 79 92 92 HOH HOH . 
D 4 HOH A 80 93 93 HOH HOH . 
D 4 HOH A 81 94 94 HOH HOH . 
D 4 HOH A 82 95 95 HOH HOH . 
D 4 HOH A 83 96 96 HOH HOH . 
D 4 HOH A 84 97 97 HOH HOH . 
D 4 HOH A 85 98 98 HOH HOH . 
D 4 HOH A 86 99 99 HOH HOH . 
D 4 HOH A 87 100 100 HOH HOH . 
D 4 HOH A 88 101 101 HOH HOH . 
E 4 HOH B 1 2 2 HOH HOH . 
E 4 HOH B 2 20 20 HOH HOH . 
E 4 HOH B 3 36 36 HOH HOH . 
E 4 HOH B 4 57 57 HOH HOH . 
E 4 HOH B 5 79 79 HOH HOH . 
E 4 HOH B 6 85 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 VDX . . . C 3 0.523 40.215 40.293 1 44.6 ? O2 VDX 525 A 1 
HETATM 2 O O3 VDX . . . C 3 5.446 27.055 34.087 1 42.95 ? O3 VDX 525 A 1 
HETATM 3 C C1 VDX . . . C 3 2.934 39.21 38.875 1 50.18 ? C1 VDX 525 A 1 
HETATM 4 C C2 VDX . . . C 3 2.148 40.494 38.489 1 44.46 ? C2 VDX 525 A 1 
HETATM 5 C C3 VDX . . . C 3 0.61 40.357 38.865 1 42.53 ? C3 VDX 525 A 1 
HETATM 6 C C4 VDX . . . C 3 -0.033 39.104 38.159 1 41.51 ? C4 VDX 525 A 1 
HETATM 7 C C5 VDX . . . C 3 0.733 37.808 38.44 1 45.82 ? C5 VDX 525 A 1 
HETATM 8 C C6 VDX . . . C 3 0.18 36.58 38.88 1 42.4 ? C6 VDX 525 A 1 
HETATM 9 C C7 VDX . . . C 3 0.755 35.214 39.212 1 43.74 ? C7 VDX 525 A 1 
HETATM 10 C C8 VDX . . . C 3 0.178 34.037 39.063 1 46.18 ? C8 VDX 525 A 1 
HETATM 11 C C9 VDX . . . C 3 -1.311 33.837 38.491 1 42.33 ? C9 VDX 525 A 1 
HETATM 12 C C10 VDX . . . C 3 2.256 38.009 38.169 1 46.14 ? C10 VDX 525 A 1 
HETATM 13 C C11 VDX . . . C 3 -1.37 32.921 37.143 1 43.81 ? C11 VDX 525 A 1 
HETATM 14 C C12 VDX . . . C 3 -0.436 31.605 37.315 1 46.8 ? C12 VDX 525 A 1 
HETATM 15 C C13 VDX . . . C 3 1.089 31.857 37.907 1 46.16 ? C13 VDX 525 A 1 
HETATM 16 C C14 VDX . . . C 3 0.896 32.696 39.26 1 49.72 ? C14 VDX 525 A 1 
HETATM 17 C C15 VDX . . . C 3 2.454 32.656 39.883 1 49.24 ? C15 VDX 525 A 1 
HETATM 18 C C16 VDX . . . C 3 2.993 31.274 39.36 1 48.5 ? C16 VDX 525 A 1 
HETATM 19 C C17 VDX . . . C 3 1.812 30.654 38.548 1 47.7 ? C17 VDX 525 A 1 
HETATM 20 C C18 VDX . . . C 3 1.859 32.718 36.692 1 47.15 ? C18 VDX 525 A 1 
HETATM 21 C C19 VDX . . . C 3 2.943 37.194 37.327 1 54.33 ? C19 VDX 525 A 1 
HETATM 22 C C20 VDX . . . C 3 2.193 29.556 37.436 1 48.62 ? C20 VDX 525 A 1 
HETATM 23 C C21 VDX . . . C 3 2.454 28.218 38.296 1 45.23 ? C21 VDX 525 A 1 
HETATM 24 C C22 VDX . . . C 3 3.539 29.719 36.624 1 47.96 ? C22 VDX 525 A 1 
HETATM 25 C C23 VDX . . . C 3 3.473 29.1 35.22 1 47.24 ? C23 VDX 525 A 1 
HETATM 26 C C24 VDX . . . C 3 4.568 29.293 34.286 1 43.64 ? C24 VDX 525 A 1 
HETATM 27 C C25 VDX . . . C 3 5.011 28.172 33.354 1 50.11 ? C25 VDX 525 A 1 
HETATM 28 C C26 VDX . . . C 3 3.855 27.8 32.447 1 47.71 ? C26 VDX 525 A 1 
HETATM 29 C C27 VDX . . . C 3 6.22 28.614 32.437 1 42.92 ? C27 VDX 525 A 1 
HETATM 30 O O1 VDX . . . C 3 4.369 39.357 38.523 1 55.76 ? O1 VDX 525 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#