data_2HCD
#
_model_server_result.job_id            6zXzRfKH35jXkSHKhCvLcw 
_model_server_result.datetime_utc      '2024-10-11 15:26:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hcd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":525}' 
#
_entry.id    2HCD 
#
_exptl.entry_id    2HCD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              502.769 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL,20-(4-HYDROXY-4-METHYLPENTYL)-,(1A,3B,5Z,7E) 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2HCD 
_cell.length_a            65.859 
_cell.length_b            65.859 
_cell.length_c            265.018 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HCD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 32.9295 57.035567 44.169667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C32 H54 O4' 
_chem_comp.formula_weight    502.769 
_chem_comp.id                BIV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)-, (1A,3B,5Z,7E)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GEMINI 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C3 BIV sing 70 n n 
O2 HO2 BIV sing 71 n n 
O3 C25 BIV sing 72 n n 
O3 HO3 BIV sing 73 n n 
C1 C2 BIV sing 74 n n 
C1 C10 BIV sing 75 n n 
C1 O1 BIV sing 76 n n 
C1 H1 BIV sing 77 n n 
C2 C3 BIV sing 78 n n 
C2 H21 BIV sing 79 n n 
C2 H22 BIV sing 80 n n 
C3 C4 BIV sing 81 n n 
C3 H3 BIV sing 82 n n 
C4 C5 BIV sing 83 n n 
C4 H41 BIV sing 84 n n 
C4 H42 BIV sing 85 n n 
C5 C6 BIV doub 86 z n 
C5 C10 BIV sing 87 n n 
C6 C7 BIV sing 88 n n 
C6 H6 BIV sing 89 n n 
C7 C8 BIV doub 90 e n 
C7 H7 BIV sing 91 n n 
C8 C9 BIV sing 92 n n 
C8 C14 BIV sing 93 n n 
C9 C11 BIV sing 94 n n 
C9 H91 BIV sing 95 n n 
C9 H92 BIV sing 96 n n 
C10 C19 BIV doub 97 n n 
C11 C12 BIV sing 98 n n 
C11 H111 BIV sing 99 n n 
C11 H112 BIV sing 100 n n 
C12 C13 BIV sing 101 n n 
C12 H121 BIV sing 102 n n 
C12 H122 BIV sing 103 n n 
C13 C14 BIV sing 104 n n 
C13 C17 BIV sing 105 n n 
C13 C18 BIV sing 106 n n 
C14 C15 BIV sing 107 n n 
C14 H14 BIV sing 108 n n 
C15 C16 BIV sing 109 n n 
C15 H151 BIV sing 110 n n 
C15 H152 BIV sing 111 n n 
C16 C17 BIV sing 112 n n 
C16 H161 BIV sing 113 n n 
C16 H162 BIV sing 114 n n 
C17 C20 BIV sing 115 n n 
C17 H17 BIV sing 116 n n 
C18 H181 BIV sing 117 n n 
C18 H182 BIV sing 118 n n 
C18 H183 BIV sing 119 n n 
C19 H191 BIV sing 120 n n 
C19 H192 BIV sing 121 n n 
C20 C22 BIV sing 122 n n 
C20 C21 BIV sing 123 n n 
C20 H20 BIV sing 124 n n 
C22 C23 BIV sing 125 n n 
C22 H221 BIV sing 126 n n 
C22 H222 BIV sing 127 n n 
C23 C24 BIV sing 128 n n 
C23 H231 BIV sing 129 n n 
C23 H232 BIV sing 130 n n 
C24 C25 BIV sing 131 n n 
C24 H241 BIV sing 132 n n 
C24 H242 BIV sing 133 n n 
C25 C26 BIV sing 134 n n 
C25 C27 BIV sing 135 n n 
C26 H261 BIV sing 136 n n 
C26 H262 BIV sing 137 n n 
C26 H263 BIV sing 138 n n 
C27 H271 BIV sing 139 n n 
C27 H272 BIV sing 140 n n 
C27 H273 BIV sing 141 n n 
O1 HO1 BIV sing 142 n n 
C21 C28 BIV sing 143 n n 
C21 H211 BIV sing 144 n n 
C21 H212 BIV sing 145 n n 
C28 C29 BIV sing 146 n n 
C28 H281 BIV sing 147 n n 
C28 H282 BIV sing 148 n n 
C29 C30 BIV sing 149 n n 
C29 H291 BIV sing 150 n n 
C29 H292 BIV sing 151 n n 
C30 O4 BIV sing 152 n n 
C30 C32 BIV sing 153 n n 
C30 C33 BIV sing 154 n n 
O4 HO4 BIV sing 155 n n 
C32 H321 BIV sing 156 n n 
C32 H322 BIV sing 157 n n 
C32 H323 BIV sing 158 n n 
C33 H331 BIV sing 159 n n 
C33 H332 BIV sing 160 n n 
C33 H333 BIV sing 161 n n 
#
_atom_sites.entry_id                     2HCD 
_atom_sites.fract_transf_matrix[1][1]    0.015184 
_atom_sites.fract_transf_matrix[1][2]    0.008766 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017533 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BIV A 1 525 525 BIV BIV . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 3 3 HOH HOH . 
D 4 HOH A 4 4 4 HOH HOH . 
D 4 HOH A 5 5 5 HOH HOH . 
D 4 HOH A 6 6 6 HOH HOH . 
D 4 HOH A 7 7 7 HOH HOH . 
D 4 HOH A 8 8 8 HOH HOH . 
D 4 HOH A 9 9 9 HOH HOH . 
D 4 HOH A 10 10 10 HOH HOH . 
D 4 HOH A 11 11 11 HOH HOH . 
D 4 HOH A 12 12 12 HOH HOH . 
D 4 HOH A 13 13 13 HOH HOH . 
D 4 HOH A 14 14 14 HOH HOH . 
D 4 HOH A 15 15 15 HOH HOH . 
D 4 HOH A 16 16 16 HOH HOH . 
D 4 HOH A 17 17 17 HOH HOH . 
D 4 HOH A 18 18 18 HOH HOH . 
D 4 HOH A 19 19 19 HOH HOH . 
D 4 HOH A 20 20 20 HOH HOH . 
D 4 HOH A 21 21 21 HOH HOH . 
D 4 HOH A 22 22 22 HOH HOH . 
D 4 HOH A 23 23 23 HOH HOH . 
D 4 HOH A 24 24 24 HOH HOH . 
D 4 HOH A 25 25 25 HOH HOH . 
D 4 HOH A 26 26 26 HOH HOH . 
D 4 HOH A 27 27 27 HOH HOH . 
D 4 HOH A 28 28 28 HOH HOH . 
D 4 HOH A 29 29 29 HOH HOH . 
D 4 HOH A 30 30 30 HOH HOH . 
D 4 HOH A 31 31 31 HOH HOH . 
D 4 HOH A 32 32 32 HOH HOH . 
D 4 HOH A 33 33 33 HOH HOH . 
D 4 HOH A 34 34 34 HOH HOH . 
D 4 HOH A 35 35 35 HOH HOH . 
D 4 HOH A 36 36 36 HOH HOH . 
D 4 HOH A 37 37 37 HOH HOH . 
D 4 HOH A 38 38 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 BIV . . . C 3 0.527 40.012 40.128 1 49.17 ? O2 BIV 525 A 1 
HETATM 2 O O3 BIV . . . C 3 5.309 26.687 34.189 1 61.31 ? O3 BIV 525 A 1 
HETATM 3 C C1 BIV . . . C 3 2.954 38.841 38.821 1 55.62 ? C1 BIV 525 A 1 
HETATM 4 C C2 BIV . . . C 3 2.195 40.126 38.349 1 52.23 ? C2 BIV 525 A 1 
HETATM 5 C C3 BIV . . . C 3 0.641 40.021 38.704 1 49.83 ? C3 BIV 525 A 1 
HETATM 6 C C4 BIV . . . C 3 -0.013 38.7 38.121 1 50.29 ? C4 BIV 525 A 1 
HETATM 7 C C5 BIV . . . C 3 0.749 37.388 38.437 1 52.03 ? C5 BIV 525 A 1 
HETATM 8 C C6 BIV . . . C 3 0.164 36.202 38.9 1 50.15 ? C6 BIV 525 A 1 
HETATM 9 C C7 BIV . . . C 3 0.731 34.862 39.215 1 50.09 ? C7 BIV 525 A 1 
HETATM 10 C C8 BIV . . . C 3 0.293 33.676 38.967 1 50.72 ? C8 BIV 525 A 1 
HETATM 11 C C9 BIV . . . C 3 -1.086 33.337 38.197 1 50.56 ? C9 BIV 525 A 1 
HETATM 12 C C10 BIV . . . C 3 2.302 37.573 38.146 1 54.19 ? C10 BIV 525 A 1 
HETATM 13 C C11 BIV . . . C 3 -0.854 32.483 36.842 1 50.21 ? C11 BIV 525 A 1 
HETATM 14 C C12 BIV . . . C 3 0.149 31.23 37.131 1 50.07 ? C12 BIV 525 A 1 
HETATM 15 C C13 BIV . . . C 3 1.528 31.509 38.064 1 50.9 ? C13 BIV 525 A 1 
HETATM 16 C C14 BIV . . . C 3 1.048 32.387 39.376 1 51.09 ? C14 BIV 525 A 1 
HETATM 17 C C15 BIV . . . C 3 2.528 32.527 40.201 1 50.32 ? C15 BIV 525 A 1 
HETATM 18 C C16 BIV . . . C 3 3.213 31.141 39.832 1 52.18 ? C16 BIV 525 A 1 
HETATM 19 C C17 BIV . . . C 3 2.162 30.405 38.932 1 52.28 ? C17 BIV 525 A 1 
HETATM 20 C C18 BIV . . . C 3 2.497 32.424 36.959 1 47.8 ? C18 BIV 525 A 1 
HETATM 21 C C19 BIV . . . C 3 3.018 36.705 37.346 1 54.33 ? C19 BIV 525 A 1 
HETATM 22 C C20 BIV . . . C 3 2.769 29.197 38.011 1 55.25 ? C20 BIV 525 A 1 
HETATM 23 C C22 BIV . . . C 3 4.011 29.247 37.027 1 55.23 ? C22 BIV 525 A 1 
HETATM 24 C C23 BIV . . . C 3 3.552 28.976 35.574 1 55.28 ? C23 BIV 525 A 1 
HETATM 25 C C24 BIV . . . C 3 4.529 28.989 34.492 1 58.26 ? C24 BIV 525 A 1 
HETATM 26 C C25 BIV . . . C 3 4.835 27.831 33.519 1 61.37 ? C25 BIV 525 A 1 
HETATM 27 C C26 BIV . . . C 3 3.587 27.494 32.708 1 61.46 ? C26 BIV 525 A 1 
HETATM 28 C C27 BIV . . . C 3 5.961 28.247 32.49 1 61.46 ? C27 BIV 525 A 1 
HETATM 29 O O1 BIV . . . C 3 4.405 38.971 38.476 1 60.58 ? O1 BIV 525 A 1 
HETATM 30 C C21 BIV . . . C 3 3.073 28.025 38.858 1 57.46 ? C21 BIV 525 A 1 
HETATM 31 C C28 BIV . . . C 3 3.985 26.879 39.223 1 59.55 ? C28 BIV 525 A 1 
HETATM 32 C C29 BIV . . . C 3 3.878 26.632 40.741 1 61.92 ? C29 BIV 525 A 1 
HETATM 33 C C30 BIV . . . C 3 3.163 25.279 41.112 1 64.16 ? C30 BIV 525 A 1 
HETATM 34 O O4 BIV . . . C 3 3.195 24.266 39.934 1 65.11 ? O4 BIV 525 A 1 
HETATM 35 C C32 BIV . . . C 3 1.702 25.567 41.507 1 60.64 ? C32 BIV 525 A 1 
HETATM 36 C C33 BIV . . . C 3 3.888 24.637 42.316 1 63.82 ? C33 BIV 525 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#