data_2HCH
#
_model_server_result.job_id            E7QXgxuOJeZHj63J9Bvawg 
_model_server_result.datetime_utc      '2024-11-01 15:27:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hch 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":402}' 
#
_entry.id    2HCH 
#
_exptl.entry_id    2HCH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.308 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-N-[(2-AMINO)ETHYL CARBOXAMIDO] ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HCH 
_cell.length_a            65.66 
_cell.length_b            84.77 
_cell.length_c            94.92 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HCH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
_chem_comp.formula           'C12 H17 N7 O4' 
_chem_comp.formula_weight    323.308 
_chem_comp.id                N5A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-N-[(2-AMINO)ETHYL CARBOXAMIDO] ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (2S,3S,4R,5R)-N-(2-AMINOETHYL)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-CARBOXAMIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N53 C52 N5A sing 274 n n 
N53 H531 N5A sing 275 n n 
N53 H532 N5A sing 276 n n 
C52 C51 N5A sing 277 n n 
C52 H521 N5A sing 278 n n 
C52 H522 N5A sing 279 n n 
C51 N5' N5A sing 280 n n 
C51 H511 N5A sing 281 n n 
C51 H512 N5A sing 282 n n 
N5' C5' N5A sing 283 n n 
N5' HN5' N5A sing 284 n n 
C5' O5' N5A doub 285 n n 
C5' C4' N5A sing 286 n n 
C4' O4' N5A sing 287 n n 
C4' C3' N5A sing 288 n n 
C4' H4' N5A sing 289 n n 
O4' C1' N5A sing 290 n n 
C3' O3' N5A sing 291 n n 
C3' C2' N5A sing 292 n n 
C3' H3' N5A sing 293 n n 
O3' HO3' N5A sing 294 n n 
C2' O2' N5A sing 295 n n 
C2' C1' N5A sing 296 n n 
C2' H2' N5A sing 297 n n 
O2' HO2' N5A sing 298 n n 
C1' N9 N5A sing 299 n n 
C1' H1' N5A sing 300 n n 
N9 C8 N5A sing 301 n y 
N9 C4 N5A sing 302 n y 
C8 N7 N5A doub 303 n y 
C8 H8 N5A sing 304 n n 
N7 C5 N5A sing 305 n y 
C5 C4 N5A doub 306 n y 
C5 C6 N5A sing 307 n y 
C4 N3 N5A sing 308 n y 
N3 C2 N5A doub 309 n y 
C2 N1 N5A sing 310 n y 
C2 H2 N5A sing 311 n n 
N1 C6 N5A doub 312 n y 
C6 N6 N5A sing 313 n n 
N6 HN61 N5A sing 314 n n 
N6 HN62 N5A sing 315 n n 
#
_atom_sites.entry_id                     2HCH 
_atom_sites.fract_transf_matrix[1][1]    0.01523 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 N5A A 1 401 1 N5A N5A . 
D 3 PG4 A 1 501 501 PG4 PG4 . 
E 3 PG4 A 1 502 502 PG4 PG4 . 
F 3 PG4 A 1 505 505 PG4 PG4 . 
G 2 N5A B 1 402 2 N5A N5A . 
H 3 PG4 B 1 503 503 PG4 PG4 . 
I 3 PG4 B 1 504 504 PG4 PG4 . 
J 4 1PE B 1 601 601 1PE 1PE . 
K 5 HOH A 1 506 1 HOH HOH . 
K 5 HOH A 2 507 5 HOH HOH . 
K 5 HOH A 3 508 6 HOH HOH . 
K 5 HOH A 4 509 9 HOH HOH . 
K 5 HOH A 5 510 10 HOH HOH . 
K 5 HOH A 6 511 13 HOH HOH . 
K 5 HOH A 7 512 15 HOH HOH . 
K 5 HOH A 8 513 18 HOH HOH . 
K 5 HOH A 9 514 20 HOH HOH . 
K 5 HOH A 10 515 21 HOH HOH . 
K 5 HOH A 11 516 23 HOH HOH . 
K 5 HOH A 12 517 25 HOH HOH . 
K 5 HOH A 13 518 26 HOH HOH . 
K 5 HOH A 14 519 29 HOH HOH . 
K 5 HOH A 15 520 31 HOH HOH . 
K 5 HOH A 16 521 32 HOH HOH . 
K 5 HOH A 17 522 33 HOH HOH . 
K 5 HOH A 18 523 36 HOH HOH . 
K 5 HOH A 19 524 40 HOH HOH . 
K 5 HOH A 20 525 43 HOH HOH . 
K 5 HOH A 21 526 45 HOH HOH . 
K 5 HOH A 22 527 51 HOH HOH . 
K 5 HOH A 23 528 52 HOH HOH . 
K 5 HOH A 24 529 53 HOH HOH . 
K 5 HOH A 25 530 54 HOH HOH . 
K 5 HOH A 26 531 55 HOH HOH . 
K 5 HOH A 27 532 56 HOH HOH . 
K 5 HOH A 28 533 57 HOH HOH . 
K 5 HOH A 29 534 59 HOH HOH . 
K 5 HOH A 30 535 65 HOH HOH . 
K 5 HOH A 31 536 66 HOH HOH . 
K 5 HOH A 32 537 72 HOH HOH . 
K 5 HOH A 33 538 74 HOH HOH . 
K 5 HOH A 34 539 75 HOH HOH . 
K 5 HOH A 35 540 77 HOH HOH . 
K 5 HOH A 36 541 78 HOH HOH . 
K 5 HOH A 37 542 80 HOH HOH . 
K 5 HOH A 38 543 82 HOH HOH . 
K 5 HOH A 39 544 83 HOH HOH . 
K 5 HOH A 40 545 84 HOH HOH . 
K 5 HOH A 41 546 85 HOH HOH . 
K 5 HOH A 42 547 87 HOH HOH . 
K 5 HOH A 43 548 89 HOH HOH . 
K 5 HOH A 44 549 90 HOH HOH . 
K 5 HOH A 45 550 91 HOH HOH . 
K 5 HOH A 46 551 96 HOH HOH . 
K 5 HOH A 47 552 97 HOH HOH . 
K 5 HOH A 48 553 102 HOH HOH . 
K 5 HOH A 49 554 103 HOH HOH . 
K 5 HOH A 50 555 104 HOH HOH . 
K 5 HOH A 51 556 108 HOH HOH . 
K 5 HOH A 52 557 109 HOH HOH . 
K 5 HOH A 53 558 110 HOH HOH . 
K 5 HOH A 54 559 113 HOH HOH . 
K 5 HOH A 55 560 114 HOH HOH . 
K 5 HOH A 56 561 115 HOH HOH . 
K 5 HOH A 57 562 117 HOH HOH . 
K 5 HOH A 58 563 121 HOH HOH . 
K 5 HOH A 59 564 122 HOH HOH . 
K 5 HOH A 60 565 125 HOH HOH . 
K 5 HOH A 61 566 128 HOH HOH . 
K 5 HOH A 62 567 131 HOH HOH . 
K 5 HOH A 63 568 132 HOH HOH . 
K 5 HOH A 64 569 134 HOH HOH . 
K 5 HOH A 65 570 136 HOH HOH . 
K 5 HOH A 66 571 137 HOH HOH . 
K 5 HOH A 67 572 140 HOH HOH . 
K 5 HOH A 68 573 144 HOH HOH . 
K 5 HOH A 69 574 145 HOH HOH . 
K 5 HOH A 70 575 149 HOH HOH . 
K 5 HOH A 71 576 152 HOH HOH . 
K 5 HOH A 72 577 156 HOH HOH . 
K 5 HOH A 73 578 158 HOH HOH . 
K 5 HOH A 74 579 159 HOH HOH . 
K 5 HOH A 75 580 162 HOH HOH . 
K 5 HOH A 76 581 164 HOH HOH . 
K 5 HOH A 77 582 167 HOH HOH . 
K 5 HOH A 78 583 169 HOH HOH . 
K 5 HOH A 79 584 171 HOH HOH . 
K 5 HOH A 80 585 177 HOH HOH . 
K 5 HOH A 81 586 179 HOH HOH . 
K 5 HOH A 82 587 180 HOH HOH . 
K 5 HOH A 83 588 181 HOH HOH . 
K 5 HOH A 84 589 182 HOH HOH . 
K 5 HOH A 85 590 187 HOH HOH . 
K 5 HOH A 86 591 188 HOH HOH . 
K 5 HOH A 87 592 189 HOH HOH . 
K 5 HOH A 88 593 191 HOH HOH . 
L 5 HOH B 1 602 2 HOH HOH . 
L 5 HOH B 2 603 3 HOH HOH . 
L 5 HOH B 3 604 4 HOH HOH . 
L 5 HOH B 4 605 7 HOH HOH . 
L 5 HOH B 5 606 8 HOH HOH . 
L 5 HOH B 6 607 11 HOH HOH . 
L 5 HOH B 7 608 12 HOH HOH . 
L 5 HOH B 8 609 14 HOH HOH . 
L 5 HOH B 9 610 16 HOH HOH . 
L 5 HOH B 10 611 17 HOH HOH . 
L 5 HOH B 11 612 19 HOH HOH . 
L 5 HOH B 12 613 22 HOH HOH . 
L 5 HOH B 13 614 24 HOH HOH . 
L 5 HOH B 14 615 27 HOH HOH . 
L 5 HOH B 15 616 28 HOH HOH . 
L 5 HOH B 16 617 30 HOH HOH . 
L 5 HOH B 17 618 34 HOH HOH . 
L 5 HOH B 18 619 35 HOH HOH . 
L 5 HOH B 19 620 37 HOH HOH . 
L 5 HOH B 20 621 38 HOH HOH . 
L 5 HOH B 21 622 39 HOH HOH . 
L 5 HOH B 22 623 41 HOH HOH . 
L 5 HOH B 23 624 42 HOH HOH . 
L 5 HOH B 24 625 44 HOH HOH . 
L 5 HOH B 25 626 46 HOH HOH . 
L 5 HOH B 26 627 47 HOH HOH . 
L 5 HOH B 27 628 48 HOH HOH . 
L 5 HOH B 28 629 49 HOH HOH . 
L 5 HOH B 29 630 50 HOH HOH . 
L 5 HOH B 30 631 58 HOH HOH . 
L 5 HOH B 31 632 60 HOH HOH . 
L 5 HOH B 32 633 61 HOH HOH . 
L 5 HOH B 33 634 62 HOH HOH . 
L 5 HOH B 34 635 63 HOH HOH . 
L 5 HOH B 35 636 64 HOH HOH . 
L 5 HOH B 36 637 67 HOH HOH . 
L 5 HOH B 37 638 68 HOH HOH . 
L 5 HOH B 38 639 69 HOH HOH . 
L 5 HOH B 39 640 70 HOH HOH . 
L 5 HOH B 40 641 71 HOH HOH . 
L 5 HOH B 41 642 73 HOH HOH . 
L 5 HOH B 42 643 76 HOH HOH . 
L 5 HOH B 43 644 79 HOH HOH . 
L 5 HOH B 44 645 81 HOH HOH . 
L 5 HOH B 45 646 86 HOH HOH . 
L 5 HOH B 46 647 88 HOH HOH . 
L 5 HOH B 47 648 92 HOH HOH . 
L 5 HOH B 48 649 93 HOH HOH . 
L 5 HOH B 49 650 94 HOH HOH . 
L 5 HOH B 50 651 95 HOH HOH . 
L 5 HOH B 51 652 98 HOH HOH . 
L 5 HOH B 52 653 99 HOH HOH . 
L 5 HOH B 53 654 100 HOH HOH . 
L 5 HOH B 54 655 101 HOH HOH . 
L 5 HOH B 55 656 105 HOH HOH . 
L 5 HOH B 56 657 106 HOH HOH . 
L 5 HOH B 57 658 107 HOH HOH . 
L 5 HOH B 58 659 111 HOH HOH . 
L 5 HOH B 59 660 112 HOH HOH . 
L 5 HOH B 60 661 116 HOH HOH . 
L 5 HOH B 61 662 118 HOH HOH . 
L 5 HOH B 62 663 119 HOH HOH . 
L 5 HOH B 63 664 120 HOH HOH . 
L 5 HOH B 64 665 123 HOH HOH . 
L 5 HOH B 65 666 124 HOH HOH . 
L 5 HOH B 66 667 126 HOH HOH . 
L 5 HOH B 67 668 127 HOH HOH . 
L 5 HOH B 68 669 129 HOH HOH . 
L 5 HOH B 69 670 130 HOH HOH . 
L 5 HOH B 70 671 133 HOH HOH . 
L 5 HOH B 71 672 135 HOH HOH . 
L 5 HOH B 72 673 138 HOH HOH . 
L 5 HOH B 73 674 139 HOH HOH . 
L 5 HOH B 74 675 141 HOH HOH . 
L 5 HOH B 75 676 142 HOH HOH . 
L 5 HOH B 76 677 143 HOH HOH . 
L 5 HOH B 77 678 146 HOH HOH . 
L 5 HOH B 78 679 147 HOH HOH . 
L 5 HOH B 79 680 148 HOH HOH . 
L 5 HOH B 80 681 150 HOH HOH . 
L 5 HOH B 81 682 151 HOH HOH . 
L 5 HOH B 82 683 153 HOH HOH . 
L 5 HOH B 83 684 154 HOH HOH . 
L 5 HOH B 84 685 155 HOH HOH . 
L 5 HOH B 85 686 157 HOH HOH . 
L 5 HOH B 86 687 160 HOH HOH . 
L 5 HOH B 87 688 161 HOH HOH . 
L 5 HOH B 88 689 163 HOH HOH . 
L 5 HOH B 89 690 165 HOH HOH . 
L 5 HOH B 90 691 166 HOH HOH . 
L 5 HOH B 91 692 168 HOH HOH . 
L 5 HOH B 92 693 170 HOH HOH . 
L 5 HOH B 93 694 172 HOH HOH . 
L 5 HOH B 94 695 173 HOH HOH . 
L 5 HOH B 95 696 174 HOH HOH . 
L 5 HOH B 96 697 175 HOH HOH . 
L 5 HOH B 97 698 176 HOH HOH . 
L 5 HOH B 98 699 178 HOH HOH . 
L 5 HOH B 99 700 183 HOH HOH . 
L 5 HOH B 100 701 184 HOH HOH . 
L 5 HOH B 101 702 185 HOH HOH . 
L 5 HOH B 102 703 186 HOH HOH . 
L 5 HOH B 103 704 190 HOH HOH . 
L 5 HOH B 104 705 192 HOH HOH . 
L 5 HOH B 105 706 193 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N53 N5A . . . G 2 -118.45 -38.344 61.043 1 38.87 ? N53 N5A 402 B 1 
HETATM 2 C C52 N5A . . . G 2 -118.741 -37.082 60.347 1 38.24 ? C52 N5A 402 B 1 
HETATM 3 C C51 N5A . . . G 2 -119.828 -37.323 59.297 1 36.88 ? C51 N5A 402 B 1 
HETATM 4 N N5' N5A . . . G 2 -119.378 -38.367 58.366 1 35.86 ? N5' N5A 402 B 1 
HETATM 5 C C5' N5A . . . G 2 -118.924 -38.084 57.149 1 35.53 ? C5' N5A 402 B 1 
HETATM 6 O O5' N5A . . . G 2 -118.855 -36.935 56.711 1 36.95 ? O5' N5A 402 B 1 
HETATM 7 C C4' N5A . . . G 2 -118.476 -39.237 56.249 1 34.16 ? C4' N5A 402 B 1 
HETATM 8 O O4' N5A . . . G 2 -119.553 -39.723 55.43 1 31.24 ? O4' N5A 402 B 1 
HETATM 9 C C3' N5A . . . G 2 -117.385 -38.811 55.265 1 33.82 ? C3' N5A 402 B 1 
HETATM 10 O O3' N5A . . . G 2 -116.114 -38.861 55.918 1 33.83 ? O3' N5A 402 B 1 
HETATM 11 C C2' N5A . . . G 2 -117.495 -39.986 54.297 1 33.01 ? C2' N5A 402 B 1 
HETATM 12 O O2' N5A . . . G 2 -117.028 -41.179 54.932 1 33.2 ? O2' N5A 402 B 1 
HETATM 13 C C1' N5A . . . G 2 -119.016 -40.042 54.133 1 29.58 ? C1' N5A 402 B 1 
HETATM 14 N N9 N5A . . . G 2 -119.461 -38.994 53.188 1 26.89 ? N9 N5A 402 B 1 
HETATM 15 C C8 N5A . . . G 2 -119.907 -37.778 53.494 1 24.44 ? C8 N5A 402 B 1 
HETATM 16 N N7 N5A . . . G 2 -120.242 -37.129 52.381 1 22.14 ? N7 N5A 402 B 1 
HETATM 17 C C5 N5A . . . G 2 -120.008 -37.94 51.347 1 22.5 ? C5 N5A 402 B 1 
HETATM 18 C C4 N5A . . . G 2 -119.509 -39.129 51.862 1 24 ? C4 N5A 402 B 1 
HETATM 19 N N3 N5A . . . G 2 -119.201 -40.131 51.033 1 22.97 ? N3 N5A 402 B 1 
HETATM 20 C C2 N5A . . . G 2 -119.371 -39.999 49.728 1 20.14 ? C2 N5A 402 B 1 
HETATM 21 N N1 N5A . . . G 2 -119.842 -38.884 49.202 1 19.91 ? N1 N5A 402 B 1 
HETATM 22 C C6 N5A . . . G 2 -120.169 -37.834 49.976 1 19.66 ? C6 N5A 402 B 1 
HETATM 23 N N6 N5A . . . G 2 -120.627 -36.715 49.42 1 12.63 ? N6 N5A 402 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#