data_2HCJ
#
_model_server_result.job_id            D4RMpc5hSuqeabHSeX2lPw 
_model_server_result.datetime_utc      '2024-11-23 07:04:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hcj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1004}' 
#
_entry.id    2HCJ 
#
_exptl.entry_id    2HCJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              74.035 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYOXYLIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HCJ 
_cell.length_a            69.11 
_cell.length_b            69.11 
_cell.length_c            157.33 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HCJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ASP 22 B ASP 80 1_555 B N CSO 23 B CSO 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B C CSO 23 B CSO 81 1_555 B N PRO 24 B PRO 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
metalc ? metalc1 A OG1 THR 18 A THR 25 1_555 C MG MG . A MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc2 C MG MG . A MG 998 1_555 E O2B GDP . A GDP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc3 C MG MG . A MG 998 1_555 K O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc4 C MG MG . A MG 998 1_555 I O11 TAC . B TAC 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc5 C MG MG . A MG 998 1_555 I O12 TAC . B TAC 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc6 C MG MG . A MG 998 1_555 L O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc7 B O THR 50 B THR 108 1_555 F NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc8 B OD1 ASP 51 B ASP 109 1_555 F NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc9 B OD2 ASP 138 B ASP 196 1_555 H NA NA . B NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc10 B OE2 GLU 290 B GLU 348 1_555 G NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
#
_chem_comp.formula           'C2 H2 O3' 
_chem_comp.formula_weight    74.035 
_chem_comp.id                GLV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYOXALATE;GLYOXYLATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GLV doub 179 n n 
C1 C2 GLV sing 180 n n 
C1 H1 GLV sing 181 n n 
C2 O2 GLV doub 182 n n 
C2 O3 GLV sing 183 n n 
O3 HO3 GLV sing 184 n n 
#
_atom_sites.entry_id                     2HCJ 
_atom_sites.fract_transf_matrix[1][1]    0.01447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006356 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 998 998 MG MG . 
D 4 SO4 A 1 1005 1005 SO4 SO4 . 
E 5 GDP A 1 999 999 GDP GDP . 
F 6 NA B 1 1001 1001 NA NA . 
G 6 NA B 1 1002 1002 NA NA . 
H 6 NA B 1 1003 1003 NA NA . 
I 7 TAC B 1 888 888 TAC TAC . 
J 8 GLV B 1 1004 1004 GLV GLV . 
K 9 HOH A 1 2001 2001 HOH HOH . 
K 9 HOH A 2 2013 2013 HOH HOH . 
K 9 HOH A 3 2014 2014 HOH HOH . 
K 9 HOH A 4 2047 2047 HOH HOH . 
K 9 HOH A 5 2059 2059 HOH HOH . 
K 9 HOH A 6 2068 2068 HOH HOH . 
K 9 HOH A 7 2078 2078 HOH HOH . 
K 9 HOH A 8 2081 2081 HOH HOH . 
K 9 HOH A 9 2105 2105 HOH HOH . 
K 9 HOH A 10 2106 2106 HOH HOH . 
K 9 HOH A 11 2107 2107 HOH HOH . 
K 9 HOH A 12 2143 2143 HOH HOH . 
K 9 HOH A 13 2144 2144 HOH HOH . 
K 9 HOH A 14 2145 2145 HOH HOH . 
K 9 HOH A 15 2154 2154 HOH HOH . 
L 9 HOH B 1 2002 2002 HOH HOH . 
L 9 HOH B 2 2003 2003 HOH HOH . 
L 9 HOH B 3 2004 2004 HOH HOH . 
L 9 HOH B 4 2005 2005 HOH HOH . 
L 9 HOH B 5 2006 2006 HOH HOH . 
L 9 HOH B 6 2007 2007 HOH HOH . 
L 9 HOH B 7 2008 2008 HOH HOH . 
L 9 HOH B 8 2009 2009 HOH HOH . 
L 9 HOH B 9 2010 2010 HOH HOH . 
L 9 HOH B 10 2011 2011 HOH HOH . 
L 9 HOH B 11 2012 2012 HOH HOH . 
L 9 HOH B 12 2015 2015 HOH HOH . 
L 9 HOH B 13 2016 2016 HOH HOH . 
L 9 HOH B 14 2017 2017 HOH HOH . 
L 9 HOH B 15 2018 2018 HOH HOH . 
L 9 HOH B 16 2019 2019 HOH HOH . 
L 9 HOH B 17 2020 2020 HOH HOH . 
L 9 HOH B 18 2021 2021 HOH HOH . 
L 9 HOH B 19 2022 2022 HOH HOH . 
L 9 HOH B 20 2023 2023 HOH HOH . 
L 9 HOH B 21 2024 2024 HOH HOH . 
L 9 HOH B 22 2025 2025 HOH HOH . 
L 9 HOH B 23 2026 2026 HOH HOH . 
L 9 HOH B 24 2027 2027 HOH HOH . 
L 9 HOH B 25 2028 2028 HOH HOH . 
L 9 HOH B 26 2029 2029 HOH HOH . 
L 9 HOH B 27 2030 2030 HOH HOH . 
L 9 HOH B 28 2031 2031 HOH HOH . 
L 9 HOH B 29 2032 2032 HOH HOH . 
L 9 HOH B 30 2033 2033 HOH HOH . 
L 9 HOH B 31 2034 2034 HOH HOH . 
L 9 HOH B 32 2035 2035 HOH HOH . 
L 9 HOH B 33 2036 2036 HOH HOH . 
L 9 HOH B 34 2037 2037 HOH HOH . 
L 9 HOH B 35 2038 2038 HOH HOH . 
L 9 HOH B 36 2039 2039 HOH HOH . 
L 9 HOH B 37 2040 2040 HOH HOH . 
L 9 HOH B 38 2041 2041 HOH HOH . 
L 9 HOH B 39 2042 2042 HOH HOH . 
L 9 HOH B 40 2043 2043 HOH HOH . 
L 9 HOH B 41 2044 2044 HOH HOH . 
L 9 HOH B 42 2045 2045 HOH HOH . 
L 9 HOH B 43 2046 2046 HOH HOH . 
L 9 HOH B 44 2048 2048 HOH HOH . 
L 9 HOH B 45 2049 2049 HOH HOH . 
L 9 HOH B 46 2050 2050 HOH HOH . 
L 9 HOH B 47 2051 2051 HOH HOH . 
L 9 HOH B 48 2052 2052 HOH HOH . 
L 9 HOH B 49 2053 2053 HOH HOH . 
L 9 HOH B 50 2054 2054 HOH HOH . 
L 9 HOH B 51 2055 2055 HOH HOH . 
L 9 HOH B 52 2056 2056 HOH HOH . 
L 9 HOH B 53 2057 2057 HOH HOH . 
L 9 HOH B 54 2058 2058 HOH HOH . 
L 9 HOH B 55 2060 2060 HOH HOH . 
L 9 HOH B 56 2061 2061 HOH HOH . 
L 9 HOH B 57 2062 2062 HOH HOH . 
L 9 HOH B 58 2063 2063 HOH HOH . 
L 9 HOH B 59 2064 2064 HOH HOH . 
L 9 HOH B 60 2065 2065 HOH HOH . 
L 9 HOH B 61 2066 2066 HOH HOH . 
L 9 HOH B 62 2067 2067 HOH HOH . 
L 9 HOH B 63 2069 2069 HOH HOH . 
L 9 HOH B 64 2070 2070 HOH HOH . 
L 9 HOH B 65 2071 2071 HOH HOH . 
L 9 HOH B 66 2072 2072 HOH HOH . 
L 9 HOH B 67 2073 2073 HOH HOH . 
L 9 HOH B 68 2074 2074 HOH HOH . 
L 9 HOH B 69 2075 2075 HOH HOH . 
L 9 HOH B 70 2076 2076 HOH HOH . 
L 9 HOH B 71 2077 2077 HOH HOH . 
L 9 HOH B 72 2079 2079 HOH HOH . 
L 9 HOH B 73 2080 2080 HOH HOH . 
L 9 HOH B 74 2082 2082 HOH HOH . 
L 9 HOH B 75 2083 2083 HOH HOH . 
L 9 HOH B 76 2084 2084 HOH HOH . 
L 9 HOH B 77 2085 2085 HOH HOH . 
L 9 HOH B 78 2086 2086 HOH HOH . 
L 9 HOH B 79 2087 2087 HOH HOH . 
L 9 HOH B 80 2088 2088 HOH HOH . 
L 9 HOH B 81 2089 2089 HOH HOH . 
L 9 HOH B 82 2090 2090 HOH HOH . 
L 9 HOH B 83 2091 2091 HOH HOH . 
L 9 HOH B 84 2092 2092 HOH HOH . 
L 9 HOH B 85 2093 2093 HOH HOH . 
L 9 HOH B 86 2094 2094 HOH HOH . 
L 9 HOH B 87 2095 2095 HOH HOH . 
L 9 HOH B 88 2096 2096 HOH HOH . 
L 9 HOH B 89 2097 2097 HOH HOH . 
L 9 HOH B 90 2098 2098 HOH HOH . 
L 9 HOH B 91 2099 2099 HOH HOH . 
L 9 HOH B 92 2100 2100 HOH HOH . 
L 9 HOH B 93 2101 2101 HOH HOH . 
L 9 HOH B 94 2102 2102 HOH HOH . 
L 9 HOH B 95 2103 2103 HOH HOH . 
L 9 HOH B 96 2104 2104 HOH HOH . 
L 9 HOH B 97 2108 2108 HOH HOH . 
L 9 HOH B 98 2109 2109 HOH HOH . 
L 9 HOH B 99 2110 2110 HOH HOH . 
L 9 HOH B 100 2111 2111 HOH HOH . 
L 9 HOH B 101 2112 2112 HOH HOH . 
L 9 HOH B 102 2113 2113 HOH HOH . 
L 9 HOH B 103 2114 2114 HOH HOH . 
L 9 HOH B 104 2115 2115 HOH HOH . 
L 9 HOH B 105 2116 2116 HOH HOH . 
L 9 HOH B 106 2117 2117 HOH HOH . 
L 9 HOH B 107 2118 2118 HOH HOH . 
L 9 HOH B 108 2119 2119 HOH HOH . 
L 9 HOH B 109 2120 2120 HOH HOH . 
L 9 HOH B 110 2121 2121 HOH HOH . 
L 9 HOH B 111 2122 2122 HOH HOH . 
L 9 HOH B 112 2123 2123 HOH HOH . 
L 9 HOH B 113 2124 2124 HOH HOH . 
L 9 HOH B 114 2125 2125 HOH HOH . 
L 9 HOH B 115 2126 2126 HOH HOH . 
L 9 HOH B 116 2127 2127 HOH HOH . 
L 9 HOH B 117 2128 2128 HOH HOH . 
L 9 HOH B 118 2129 2129 HOH HOH . 
L 9 HOH B 119 2130 2130 HOH HOH . 
L 9 HOH B 120 2131 2131 HOH HOH . 
L 9 HOH B 121 2132 2132 HOH HOH . 
L 9 HOH B 122 2133 2133 HOH HOH . 
L 9 HOH B 123 2134 2134 HOH HOH . 
L 9 HOH B 124 2135 2135 HOH HOH . 
L 9 HOH B 125 2136 2136 HOH HOH . 
L 9 HOH B 126 2137 2137 HOH HOH . 
L 9 HOH B 127 2138 2138 HOH HOH . 
L 9 HOH B 128 2139 2139 HOH HOH . 
L 9 HOH B 129 2140 2140 HOH HOH . 
L 9 HOH B 130 2141 2141 HOH HOH . 
L 9 HOH B 131 2142 2142 HOH HOH . 
L 9 HOH B 132 2146 2146 HOH HOH . 
L 9 HOH B 133 2147 2147 HOH HOH . 
L 9 HOH B 134 2148 2148 HOH HOH . 
L 9 HOH B 135 2149 2149 HOH HOH . 
L 9 HOH B 136 2150 2150 HOH HOH . 
L 9 HOH B 137 2151 2151 HOH HOH . 
L 9 HOH B 138 2152 2152 HOH HOH . 
L 9 HOH B 139 2153 2153 HOH HOH . 
L 9 HOH B 140 2155 2155 HOH HOH . 
L 9 HOH B 141 2156 2156 HOH HOH . 
L 9 HOH B 142 2157 2157 HOH HOH . 
L 9 HOH B 143 2158 2158 HOH HOH . 
L 9 HOH B 144 2159 2159 HOH HOH . 
L 9 HOH B 145 2160 2160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GLV . . . J 8 27.161 15.963 80.483 1 62.34 ? C1 GLV 1004 B 1 
HETATM 2 O O1 GLV . . . J 8 26.37 15.108 80.881 1 67.88 ? O1 GLV 1004 B 1 
HETATM 3 C C2 GLV . . . J 8 27.033 17.413 80.966 1 68.91 ? C2 GLV 1004 B 1 
HETATM 4 O O2 GLV . . . J 8 27.855 18.256 80.541 1 65.62 ? O2 GLV 1004 B 1 
HETATM 5 O O3 GLV . . . J 8 26.109 17.701 81.761 1 63.17 ? O3 GLV 1004 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#