data_2HCK # _model_server_result.job_id 90iSVfyD-4eTc9kAaYSkxw _model_server_result.datetime_utc '2024-10-18 00:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":532}' # _entry.id 2HCK # _exptl.entry_id 2HCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HCK _cell.length_a 73.5 _cell.length_b 93.3 _cell.length_c 176.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N PTR 434 A PTR 527 1_555 A C GLN 433 A GLN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C PTR 434 A PTR 527 1_555 A N GLN 435 A GLN 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 B N PTR 434 B PTR 527 1_555 B C GLN 433 B GLN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 B C PTR 434 B PTR 527 1_555 B N GLN 435 B GLN 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? metalc ? metalc1 A OE1 GLU 397 A GLU 490 1_555 C CA CA . A CA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc2 A O GLU 431 A GLU 524 1_555 E CA CA . B CA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc3 A O PTR 434 A PTR 527 1_555 E CA CA . B CA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc4 B OE1 GLU 397 B GLU 490 1_555 E CA CA . B CA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc5 B OE2 GLU 397 B GLU 490 1_555 E CA CA . B CA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc6 B O GLU 431 B GLU 524 1_555 C CA CA . A CA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc7 B O PTR 434 B PTR 527 1_555 C CA CA . A CA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id QUE _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms QUERCETIN # _atom_sites.entry_id 2HCK _atom_sites.fract_transf_matrix[1][1] 0.013605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 2 2 CA CA . D 3 QUE A 1 1 1 QUE QUE . E 2 CA B 1 1 1 CA CA . F 3 QUE B 1 532 1 QUE QUE . G 4 HOH A 1 532 2 HOH HOH . G 4 HOH A 2 533 4 HOH HOH . H 4 HOH B 1 533 1 HOH HOH . H 4 HOH B 2 534 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QUE . . . F 3 38.094 44.678 162.834 1 53.54 ? C1 QUE 532 B 1 HETATM 2 C C2 QUE . . . F 3 38.423 43.357 163.283 1 54.35 ? C2 QUE 532 B 1 HETATM 3 C C3 QUE . . . F 3 39.799 42.904 163.367 1 53.28 ? C3 QUE 532 B 1 HETATM 4 C C4 QUE . . . F 3 40.716 43.895 162.958 1 53.77 ? C4 QUE 532 B 1 HETATM 5 C C5 QUE . . . F 3 40.373 45.179 162.513 1 52.76 ? C5 QUE 532 B 1 HETATM 6 C C6 QUE . . . F 3 39.069 45.623 162.429 1 52.69 ? C6 QUE 532 B 1 HETATM 7 C C9 QUE . . . F 3 40.296 41.573 163.751 1 52.3 ? C9 QUE 532 B 1 HETATM 8 C C10 QUE . . . F 3 41.72 41.271 163.764 1 54.04 ? C10 QUE 532 B 1 HETATM 9 C C11 QUE . . . F 3 42.549 42.371 163.342 1 58.43 ? C11 QUE 532 B 1 HETATM 10 C C14 QUE . . . F 3 43.956 42.312 163.329 1 66.29 ? C14 QUE 532 B 1 HETATM 11 C C15 QUE . . . F 3 44.78 41.252 163.773 1 71.12 ? C15 QUE 532 B 1 HETATM 12 C C16 QUE . . . F 3 46.193 41.408 163.76 1 76.75 ? C16 QUE 532 B 1 HETATM 13 C C17 QUE . . . F 3 46.797 42.623 163.305 1 78.59 ? C17 QUE 532 B 1 HETATM 14 C C18 QUE . . . F 3 45.98 43.69 162.862 1 76.82 ? C18 QUE 532 B 1 HETATM 15 C C19 QUE . . . F 3 44.618 43.486 162.892 1 70.91 ? C19 QUE 532 B 1 HETATM 16 O O12 QUE . . . F 3 42.02 43.59 162.964 1 55.62 ? O12 QUE 532 B 1 HETATM 17 O O13 QUE . . . F 3 39.532 40.643 164.033 1 50.79 ? O13 QUE 532 B 1 HETATM 18 O O23 QUE . . . F 3 46.455 44.933 162.421 1 79.69 ? O23 QUE 532 B 1 HETATM 19 O O24 QUE . . . F 3 48.198 42.756 163.301 1 80.33 ? O24 QUE 532 B 1 HETATM 20 O O27 QUE . . . F 3 42.185 39.985 164.156 1 47.29 ? O27 QUE 532 B 1 HETATM 21 O O29 QUE . . . F 3 38.825 46.91 161.946 1 52.11 ? O29 QUE 532 B 1 HETATM 22 O O30 QUE . . . F 3 37.343 42.537 163.579 1 54.77 ? O30 QUE 532 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #