data_2HCO # _model_server_result.job_id 1gOEIbGhuTOCT8S0BzsQFw _model_server_result.datetime_utc '2024-10-18 17:21:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":150}' # _entry.id 2HCO # _exptl.entry_id 2HCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HCO _cell.length_a 53.7 _cell.length_b 53.7 _cell.length_c 193 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 C FE HEM . A HEM 150 1_555 D C CMO . A CMO 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc3 C FE HEM . A HEM 150 1_555 D O CMO . A CMO 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 E FE HEM . B HEM 150 1_555 F C CMO . B CMO 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc6 E FE HEM . B HEM 150 1_555 F O CMO . B CMO 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 2HCO _atom_sites.fract_transf_matrix[1][1] 0.018622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 150 1 HEM HEM . D 4 CMO A 1 151 1 CMO HEM . E 3 HEM B 1 150 1 HEM HEM . F 4 CMO B 1 151 2 CMO HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 43.187 28.771 17.453 1 0 ? CHA HEM 150 A 1 HETATM 2 C CHB HEM . . . C 3 41.247 33.101 16.372 1 0 ? CHB HEM 150 A 1 HETATM 3 C CHC HEM . . . C 3 37.902 30.931 13.632 1 0 ? CHC HEM 150 A 1 HETATM 4 C CHD HEM . . . C 3 39.756 26.587 14.775 1 0 ? CHD HEM 150 A 1 HETATM 5 C C1A HEM . . . C 3 42.937 30.152 17.391 1 0 ? C1A HEM 150 A 1 HETATM 6 C C2A HEM . . . C 3 43.745 31.154 18.061 1 0 ? C2A HEM 150 A 1 HETATM 7 C C3A HEM . . . C 3 43.164 32.358 17.777 1 0 ? C3A HEM 150 A 1 HETATM 8 C C4A HEM . . . C 3 42.048 32.102 16.922 1 0 ? C4A HEM 150 A 1 HETATM 9 C CMA HEM . . . C 3 43.612 33.72 18.244 1 0 ? CMA HEM 150 A 1 HETATM 10 C CAA HEM . . . C 3 44.987 30.888 18.883 1 0 ? CAA HEM 150 A 1 HETATM 11 C CBA HEM . . . C 3 46.178 31.804 18.592 1 0 ? CBA HEM 150 A 1 HETATM 12 C CGA HEM . . . C 3 47.479 31.296 19.205 1 0 ? CGA HEM 150 A 1 HETATM 13 O O1A HEM . . . C 3 47.462 30.465 20.132 1 0 ? O1A HEM 150 A 1 HETATM 14 O O2A HEM . . . C 3 48.61 31.706 18.675 1 0 ? O2A HEM 150 A 1 HETATM 15 C C1B HEM . . . C 3 40.175 32.871 15.515 1 0 ? C1B HEM 150 A 1 HETATM 16 C C2B HEM . . . C 3 39.37 33.917 14.93 1 0 ? C2B HEM 150 A 1 HETATM 17 C C3B HEM . . . C 3 38.418 33.313 14.174 1 0 ? C3B HEM 150 A 1 HETATM 18 C C4B HEM . . . C 3 38.667 31.891 14.266 1 0 ? C4B HEM 150 A 1 HETATM 19 C CMB HEM . . . C 3 39.579 35.406 15.13 1 0 ? CMB HEM 150 A 1 HETATM 20 C CAB HEM . . . C 3 37.325 33.94 13.364 1 0 ? CAB HEM 150 A 1 HETATM 21 C CBB HEM . . . C 3 36.527 34.965 13.877 1 0 ? CBB HEM 150 A 1 HETATM 22 C C1C HEM . . . C 3 38.123 29.564 13.723 1 0 ? C1C HEM 150 A 1 HETATM 23 C C2C HEM . . . C 3 37.258 28.577 13.116 1 0 ? C2C HEM 150 A 1 HETATM 24 C C3C HEM . . . C 3 37.738 27.361 13.443 1 0 ? C3C HEM 150 A 1 HETATM 25 C C4C HEM . . . C 3 38.945 27.583 14.234 1 0 ? C4C HEM 150 A 1 HETATM 26 C CMC HEM . . . C 3 36.03 28.857 12.294 1 0 ? CMC HEM 150 A 1 HETATM 27 C CAC HEM . . . C 3 37.076 26.086 13.054 1 0 ? CAC HEM 150 A 1 HETATM 28 C CBC HEM . . . C 3 37.701 24.852 13.217 1 0 ? CBC HEM 150 A 1 HETATM 29 C C1D HEM . . . C 3 40.868 26.819 15.591 1 0 ? C1D HEM 150 A 1 HETATM 30 C C2D HEM . . . C 3 41.677 25.77 16.167 1 0 ? C2D HEM 150 A 1 HETATM 31 C C3D HEM . . . C 3 42.61 26.378 16.949 1 0 ? C3D HEM 150 A 1 HETATM 32 C C4D HEM . . . C 3 42.414 27.804 16.82 1 0 ? C4D HEM 150 A 1 HETATM 33 C CMD HEM . . . C 3 41.477 24.286 15.981 1 0 ? CMD HEM 150 A 1 HETATM 34 C CAD HEM . . . C 3 43.635 25.678 17.808 1 0 ? CAD HEM 150 A 1 HETATM 35 C CBD HEM . . . C 3 43.059 25.067 19.086 1 0 ? CBD HEM 150 A 1 HETATM 36 C CGD HEM . . . C 3 44.157 24.364 19.897 1 0 ? CGD HEM 150 A 1 HETATM 37 O O1D HEM . . . C 3 44.853 23.499 19.362 1 0 ? O1D HEM 150 A 1 HETATM 38 O O2D HEM . . . C 3 44.518 24.895 21.049 1 0 ? O2D HEM 150 A 1 HETATM 39 N NA HEM . . . C 3 41.895 30.742 16.691 1 0 ? NA HEM 150 A 1 HETATM 40 N NB HEM . . . C 3 39.749 31.63 15.086 1 0 ? NB HEM 150 A 1 HETATM 41 N NC HEM . . . C 3 39.148 28.949 14.415 1 0 ? NC HEM 150 A 1 HETATM 42 N ND HEM . . . C 3 41.32 28.064 15.994 1 0 ? ND HEM 150 A 1 HETATM 43 FE FE HEM . . . C 3 40.533 29.841 15.554 1 0 ? FE HEM 150 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #