data_2HD0
#
_model_server_result.job_id            cpH2VhFQ3BfYK-4uOtN1ew 
_model_server_result.datetime_utc      '2025-04-19 06:16:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hd0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":220}' 
#
_entry.id    2HD0 
#
_exptl.entry_id    2HD0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.88 
_cell.angle_gamma         90 
_cell.entry_id            2HD0 
_cell.length_a            109.812 
_cell.length_b            68.819 
_cell.length_c            125.162 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HD0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,M,N,O,P,Y,Z 1 1 
C,D,Q,AA,BA 2 1 
E,F,R,S,CA,DA 3 1 
G,H,T,EA,FA 4 1 
I,J,U,V,W,GA,HA 5 1 
K,L,X,IA,JA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     2HD0 
_atom_sites.fract_transf_matrix[1][1]    0.009106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00259 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014531 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 BOG A 1 218 1 BOG BOG . 
N 2 BOG A 1 219 3 BOG BOG . 
O 2 BOG A 1 220 13 BOG BOG . 
P 2 BOG B 1 218 6 BOG BOG . 
Q 2 BOG C 1 218 5 BOG BOG . 
R 2 BOG F 1 218 4 BOG BOG . 
S 2 BOG F 1 219 8 BOG BOG . 
T 2 BOG H 1 218 12 BOG BOG . 
U 3 DMU I 1 218 9 DMU DMU . 
V 2 BOG I 1 219 11 BOG BOG . 
W 2 BOG J 1 218 10 BOG BOG . 
X 2 BOG K 1 218 7 BOG BOG . 
Y 4 HOH A 1 221 4 HOH TIP . 
Y 4 HOH A 2 222 9 HOH TIP . 
Y 4 HOH A 3 223 23 HOH TIP . 
Y 4 HOH A 4 224 25 HOH TIP . 
Y 4 HOH A 5 225 46 HOH TIP . 
Y 4 HOH A 6 226 56 HOH TIP . 
Y 4 HOH A 7 227 80 HOH TIP . 
Y 4 HOH A 8 228 83 HOH TIP . 
Y 4 HOH A 9 229 87 HOH TIP . 
Y 4 HOH A 10 230 90 HOH TIP . 
Y 4 HOH A 11 231 106 HOH TIP . 
Y 4 HOH A 12 232 107 HOH TIP . 
Y 4 HOH A 13 233 108 HOH TIP . 
Y 4 HOH A 14 234 133 HOH TIP . 
Y 4 HOH A 15 235 143 HOH TIP . 
Y 4 HOH A 16 236 156 HOH TIP . 
Z 4 HOH B 1 219 5 HOH TIP . 
Z 4 HOH B 2 220 28 HOH TIP . 
Z 4 HOH B 3 221 39 HOH TIP . 
Z 4 HOH B 4 222 57 HOH TIP . 
Z 4 HOH B 5 223 59 HOH TIP . 
Z 4 HOH B 6 224 63 HOH TIP . 
Z 4 HOH B 7 225 85 HOH TIP . 
Z 4 HOH B 8 226 104 HOH TIP . 
Z 4 HOH B 9 227 150 HOH TIP . 
Z 4 HOH B 10 228 161 HOH TIP . 
AA 4 HOH C 1 219 1 HOH TIP . 
AA 4 HOH C 2 220 2 HOH TIP . 
AA 4 HOH C 3 221 3 HOH TIP . 
AA 4 HOH C 4 222 15 HOH TIP . 
AA 4 HOH C 5 223 16 HOH TIP . 
AA 4 HOH C 6 224 26 HOH TIP . 
AA 4 HOH C 7 225 27 HOH TIP . 
AA 4 HOH C 8 226 37 HOH TIP . 
AA 4 HOH C 9 227 45 HOH TIP . 
AA 4 HOH C 10 228 58 HOH TIP . 
AA 4 HOH C 11 229 89 HOH TIP . 
AA 4 HOH C 12 230 91 HOH TIP . 
AA 4 HOH C 13 231 101 HOH TIP . 
AA 4 HOH C 14 232 103 HOH TIP . 
AA 4 HOH C 15 233 105 HOH TIP . 
AA 4 HOH C 16 234 109 HOH TIP . 
AA 4 HOH C 17 235 116 HOH TIP . 
AA 4 HOH C 18 236 117 HOH TIP . 
AA 4 HOH C 19 237 131 HOH TIP . 
AA 4 HOH C 20 238 145 HOH TIP . 
AA 4 HOH C 21 239 152 HOH TIP . 
AA 4 HOH C 22 240 160 HOH TIP . 
AA 4 HOH C 23 241 171 HOH TIP . 
AA 4 HOH C 24 242 174 HOH TIP . 
BA 4 HOH D 1 218 32 HOH TIP . 
BA 4 HOH D 2 219 40 HOH TIP . 
BA 4 HOH D 3 220 53 HOH TIP . 
BA 4 HOH D 4 221 64 HOH TIP . 
BA 4 HOH D 5 222 70 HOH TIP . 
BA 4 HOH D 6 223 81 HOH TIP . 
BA 4 HOH D 7 224 93 HOH TIP . 
BA 4 HOH D 8 225 110 HOH TIP . 
BA 4 HOH D 9 226 115 HOH TIP . 
BA 4 HOH D 10 227 122 HOH TIP . 
BA 4 HOH D 11 228 125 HOH TIP . 
BA 4 HOH D 12 229 127 HOH TIP . 
BA 4 HOH D 13 230 169 HOH TIP . 
BA 4 HOH D 14 231 175 HOH TIP . 
CA 4 HOH E 1 218 10 HOH TIP . 
CA 4 HOH E 2 219 11 HOH TIP . 
CA 4 HOH E 3 220 13 HOH TIP . 
CA 4 HOH E 4 221 17 HOH TIP . 
CA 4 HOH E 5 222 33 HOH TIP . 
CA 4 HOH E 6 223 38 HOH TIP . 
CA 4 HOH E 7 224 49 HOH TIP . 
CA 4 HOH E 8 225 50 HOH TIP . 
CA 4 HOH E 9 226 54 HOH TIP . 
CA 4 HOH E 10 227 62 HOH TIP . 
CA 4 HOH E 11 228 65 HOH TIP . 
CA 4 HOH E 12 229 68 HOH TIP . 
CA 4 HOH E 13 230 69 HOH TIP . 
CA 4 HOH E 14 231 75 HOH TIP . 
CA 4 HOH E 15 232 77 HOH TIP . 
CA 4 HOH E 16 233 79 HOH TIP . 
CA 4 HOH E 17 234 82 HOH TIP . 
CA 4 HOH E 18 235 84 HOH TIP . 
CA 4 HOH E 19 236 86 HOH TIP . 
CA 4 HOH E 20 237 111 HOH TIP . 
CA 4 HOH E 21 238 114 HOH TIP . 
CA 4 HOH E 22 239 121 HOH TIP . 
CA 4 HOH E 23 240 129 HOH TIP . 
CA 4 HOH E 24 241 130 HOH TIP . 
CA 4 HOH E 25 242 147 HOH TIP . 
CA 4 HOH E 26 243 149 HOH TIP . 
CA 4 HOH E 27 244 154 HOH TIP . 
CA 4 HOH E 28 245 158 HOH TIP . 
CA 4 HOH E 29 246 172 HOH TIP . 
DA 4 HOH F 1 220 14 HOH TIP . 
DA 4 HOH F 2 221 30 HOH TIP . 
DA 4 HOH F 3 222 31 HOH TIP . 
DA 4 HOH F 4 223 34 HOH TIP . 
DA 4 HOH F 5 224 60 HOH TIP . 
DA 4 HOH F 6 225 76 HOH TIP . 
DA 4 HOH F 7 226 95 HOH TIP . 
DA 4 HOH F 8 227 97 HOH TIP . 
DA 4 HOH F 9 228 100 HOH TIP . 
DA 4 HOH F 10 229 113 HOH TIP . 
DA 4 HOH F 11 230 144 HOH TIP . 
DA 4 HOH F 12 231 146 HOH TIP . 
DA 4 HOH F 13 232 163 HOH TIP . 
EA 4 HOH G 1 218 6 HOH TIP . 
EA 4 HOH G 2 219 7 HOH TIP . 
EA 4 HOH G 3 220 8 HOH TIP . 
EA 4 HOH G 4 221 19 HOH TIP . 
EA 4 HOH G 5 222 21 HOH TIP . 
EA 4 HOH G 6 223 22 HOH TIP . 
EA 4 HOH G 7 224 35 HOH TIP . 
EA 4 HOH G 8 225 52 HOH TIP . 
EA 4 HOH G 9 226 92 HOH TIP . 
EA 4 HOH G 10 227 118 HOH TIP . 
EA 4 HOH G 11 228 123 HOH TIP . 
EA 4 HOH G 12 229 132 HOH TIP . 
EA 4 HOH G 13 230 134 HOH TIP . 
EA 4 HOH G 14 231 141 HOH TIP . 
EA 4 HOH G 15 232 170 HOH TIP . 
FA 4 HOH H 1 219 20 HOH TIP . 
FA 4 HOH H 2 220 24 HOH TIP . 
FA 4 HOH H 3 221 29 HOH TIP . 
FA 4 HOH H 4 222 48 HOH TIP . 
FA 4 HOH H 5 223 55 HOH TIP . 
FA 4 HOH H 6 224 73 HOH TIP . 
FA 4 HOH H 7 225 74 HOH TIP . 
FA 4 HOH H 8 226 94 HOH TIP . 
FA 4 HOH H 9 227 124 HOH TIP . 
FA 4 HOH H 10 228 126 HOH TIP . 
FA 4 HOH H 11 229 128 HOH TIP . 
FA 4 HOH H 12 230 148 HOH TIP . 
FA 4 HOH H 13 231 155 HOH TIP . 
GA 4 HOH I 1 220 42 HOH TIP . 
GA 4 HOH I 2 221 43 HOH TIP . 
GA 4 HOH I 3 222 44 HOH TIP . 
GA 4 HOH I 4 223 51 HOH TIP . 
GA 4 HOH I 5 224 66 HOH TIP . 
GA 4 HOH I 6 225 67 HOH TIP . 
GA 4 HOH I 7 226 72 HOH TIP . 
GA 4 HOH I 8 227 98 HOH TIP . 
GA 4 HOH I 9 228 119 HOH TIP . 
GA 4 HOH I 10 229 135 HOH TIP . 
GA 4 HOH I 11 230 139 HOH TIP . 
GA 4 HOH I 12 231 142 HOH TIP . 
GA 4 HOH I 13 232 162 HOH TIP . 
GA 4 HOH I 14 233 164 HOH TIP . 
HA 4 HOH J 1 219 12 HOH TIP . 
HA 4 HOH J 2 220 41 HOH TIP . 
HA 4 HOH J 3 221 47 HOH TIP . 
HA 4 HOH J 4 222 112 HOH TIP . 
HA 4 HOH J 5 223 140 HOH TIP . 
HA 4 HOH J 6 224 151 HOH TIP . 
HA 4 HOH J 7 225 166 HOH TIP . 
HA 4 HOH J 8 226 176 HOH TIP . 
IA 4 HOH K 1 219 18 HOH TIP . 
IA 4 HOH K 2 220 36 HOH TIP . 
IA 4 HOH K 3 221 71 HOH TIP . 
IA 4 HOH K 4 222 78 HOH TIP . 
IA 4 HOH K 5 223 96 HOH TIP . 
IA 4 HOH K 6 224 99 HOH TIP . 
IA 4 HOH K 7 225 120 HOH TIP . 
IA 4 HOH K 8 226 136 HOH TIP . 
IA 4 HOH K 9 227 138 HOH TIP . 
IA 4 HOH K 10 228 153 HOH TIP . 
IA 4 HOH K 11 229 159 HOH TIP . 
IA 4 HOH K 12 230 165 HOH TIP . 
IA 4 HOH K 13 231 167 HOH TIP . 
JA 4 HOH L 1 218 61 HOH TIP . 
JA 4 HOH L 2 219 88 HOH TIP . 
JA 4 HOH L 3 220 102 HOH TIP . 
JA 4 HOH L 4 221 137 HOH TIP . 
JA 4 HOH L 5 222 157 HOH TIP . 
JA 4 HOH L 6 223 168 HOH TIP . 
JA 4 HOH L 7 224 173 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . O 2 16.504 2.645 24.265 1 62.61 ? C1 BOG 220 A 1 
HETATM 2 O O1 BOG . . . O 2 15.103 2.769 23.921 1 61.88 ? O1 BOG 220 A 1 
HETATM 3 C C2 BOG . . . O 2 17.385 2.22 23.037 1 63.19 ? C2 BOG 220 A 1 
HETATM 4 O O2 BOG . . . O 2 17.011 0.923 22.525 1 63.91 ? O2 BOG 220 A 1 
HETATM 5 C C3 BOG . . . O 2 18.859 2.172 23.47 1 62.87 ? C3 BOG 220 A 1 
HETATM 6 O O3 BOG . . . O 2 19.671 1.815 22.382 1 63.09 ? O3 BOG 220 A 1 
HETATM 7 C C4 BOG . . . O 2 19.254 3.547 23.96 1 62.66 ? C4 BOG 220 A 1 
HETATM 8 O O4 BOG . . . O 2 20.625 3.524 24.333 1 63.12 ? O4 BOG 220 A 1 
HETATM 9 C C5 BOG . . . O 2 18.367 3.955 25.144 1 62.77 ? C5 BOG 220 A 1 
HETATM 10 O O5 BOG . . . O 2 16.964 3.947 24.762 1 63.65 ? O5 BOG 220 A 1 
HETATM 11 C C6 BOG . . . O 2 18.741 5.338 25.621 1 61.93 ? C6 BOG 220 A 1 
HETATM 12 O O6 BOG . . . O 2 17.671 5.91 26.348 1 62.14 ? O6 BOG 220 A 1 
HETATM 13 C C1' BOG . . . O 2 14.406 1.818 23.097 1 58.69 ? C1' BOG 220 A 1 
HETATM 14 C C2' BOG . . . O 2 12.994 2.311 22.963 1 56.15 ? C2' BOG 220 A 1 
HETATM 15 C C3' BOG . . . O 2 12.079 1.119 22.868 1 56.96 ? C3' BOG 220 A 1 
HETATM 16 C C4' BOG . . . O 2 10.594 1.443 22.824 1 56.42 ? C4' BOG 220 A 1 
HETATM 17 C C5' BOG . . . O 2 9.758 0.192 22.8 1 55.87 ? C5' BOG 220 A 1 
HETATM 18 C C6' BOG . . . O 2 8.991 0.198 21.511 1 55.91 ? C6' BOG 220 A 1 
HETATM 19 C C7' BOG . . . O 2 8.056 -0.974 21.303 1 56 ? C7' BOG 220 A 1 
HETATM 20 C C8' BOG . . . O 2 7.371 -0.739 19.969 1 56.29 ? C8' BOG 220 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#