data_2HD1 # _model_server_result.job_id J9VqSqwUglLzJQnaGo-FVw _model_server_result.datetime_utc '2024-10-31 19:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 2HD1 # _exptl.entry_id 2HD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HD1 _cell.length_a 103.513 _cell.length_b 103.513 _cell.length_c 269.727 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 101 1_555 A NE2 HIS 76 A HIS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 C ZN ZN . A ZN 101 1_555 A NE2 HIS 112 A HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc3 C ZN ZN . A ZN 101 1_555 A OD2 ASP 113 A ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 C ZN ZN . A ZN 101 1_555 A OD1 ASP 222 A ASP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 C ZN ZN . A ZN 101 1_555 I O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc6 D MG MG . A MG 102 1_555 A OD1 ASP 113 A ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 D MG MG . A MG 102 1_555 I O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 D MG MG . A MG 102 1_555 I O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 D MG MG . A MG 102 1_555 I O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc10 D MG MG . A MG 102 1_555 I O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc11 F ZN ZN . B ZN 101 1_555 B NE2 HIS 76 B HIS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc12 F ZN ZN . B ZN 101 1_555 B NE2 HIS 112 B HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc13 F ZN ZN . B ZN 101 1_555 B OD2 ASP 113 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc14 F ZN ZN . B ZN 101 1_555 B OD1 ASP 222 B ASP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc15 G MG MG . B MG 102 1_555 B OD1 ASP 113 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc16 G MG MG . B MG 102 1_555 J O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc17 G MG MG . B MG 102 1_555 J O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc18 G MG MG . B MG 102 1_555 J O HOH . B HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc19 G MG MG . B MG 102 1_555 J O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2HD1 _atom_sites.fract_transf_matrix[1][1] 0.009661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 101 101 ZN ZN . D 3 MG A 1 102 102 MG MG . E 4 IBM A 1 1 1 IBM IBM . F 2 ZN B 1 101 101 ZN ZN . G 3 MG B 1 102 102 MG MG . H 4 IBM B 1 1 1 IBM IBM . I 5 HOH A 1 507 1 HOH TIP . I 5 HOH A 2 508 2 HOH TIP . I 5 HOH A 3 509 3 HOH TIP . I 5 HOH A 4 510 4 HOH TIP . I 5 HOH A 5 511 5 HOH TIP . I 5 HOH A 6 512 11 HOH TIP . I 5 HOH A 7 513 12 HOH TIP . I 5 HOH A 8 514 14 HOH TIP . I 5 HOH A 9 515 17 HOH TIP . I 5 HOH A 10 516 20 HOH TIP . I 5 HOH A 11 517 22 HOH TIP . I 5 HOH A 12 518 23 HOH TIP . I 5 HOH A 13 519 24 HOH TIP . I 5 HOH A 14 520 25 HOH TIP . I 5 HOH A 15 521 26 HOH TIP . I 5 HOH A 16 522 28 HOH TIP . I 5 HOH A 17 523 32 HOH TIP . I 5 HOH A 18 524 34 HOH TIP . I 5 HOH A 19 525 35 HOH TIP . I 5 HOH A 20 526 36 HOH TIP . I 5 HOH A 21 527 37 HOH TIP . I 5 HOH A 22 528 38 HOH TIP . I 5 HOH A 23 529 40 HOH TIP . I 5 HOH A 24 530 41 HOH TIP . I 5 HOH A 25 531 43 HOH TIP . I 5 HOH A 26 532 45 HOH TIP . I 5 HOH A 27 533 48 HOH TIP . I 5 HOH A 28 534 51 HOH TIP . I 5 HOH A 29 535 53 HOH TIP . I 5 HOH A 30 536 56 HOH TIP . I 5 HOH A 31 537 57 HOH TIP . I 5 HOH A 32 538 58 HOH TIP . I 5 HOH A 33 539 60 HOH TIP . I 5 HOH A 34 540 61 HOH TIP . I 5 HOH A 35 541 62 HOH TIP . I 5 HOH A 36 542 63 HOH TIP . I 5 HOH A 37 543 64 HOH TIP . I 5 HOH A 38 544 66 HOH TIP . I 5 HOH A 39 545 67 HOH TIP . I 5 HOH A 40 546 68 HOH TIP . I 5 HOH A 41 547 69 HOH TIP . I 5 HOH A 42 548 72 HOH TIP . I 5 HOH A 43 549 74 HOH TIP . I 5 HOH A 44 550 75 HOH TIP . I 5 HOH A 45 551 76 HOH TIP . I 5 HOH A 46 552 81 HOH TIP . I 5 HOH A 47 553 82 HOH TIP . I 5 HOH A 48 554 84 HOH TIP . I 5 HOH A 49 555 85 HOH TIP . I 5 HOH A 50 556 89 HOH TIP . I 5 HOH A 51 557 90 HOH TIP . I 5 HOH A 52 558 91 HOH TIP . I 5 HOH A 53 559 94 HOH TIP . I 5 HOH A 54 560 95 HOH TIP . I 5 HOH A 55 561 97 HOH TIP . I 5 HOH A 56 562 101 HOH TIP . I 5 HOH A 57 563 102 HOH TIP . I 5 HOH A 58 564 105 HOH TIP . I 5 HOH A 59 565 106 HOH TIP . I 5 HOH A 60 566 108 HOH TIP . I 5 HOH A 61 567 109 HOH TIP . I 5 HOH A 62 568 112 HOH TIP . I 5 HOH A 63 569 113 HOH TIP . I 5 HOH A 64 570 115 HOH TIP . I 5 HOH A 65 571 116 HOH TIP . I 5 HOH A 66 572 121 HOH TIP . I 5 HOH A 67 573 124 HOH TIP . I 5 HOH A 68 574 125 HOH TIP . I 5 HOH A 69 575 128 HOH TIP . I 5 HOH A 70 576 129 HOH TIP . I 5 HOH A 71 577 131 HOH TIP . I 5 HOH A 72 578 133 HOH TIP . I 5 HOH A 73 579 134 HOH TIP . I 5 HOH A 74 580 137 HOH TIP . I 5 HOH A 75 581 139 HOH TIP . I 5 HOH A 76 582 143 HOH TIP . I 5 HOH A 77 583 144 HOH TIP . I 5 HOH A 78 584 145 HOH TIP . I 5 HOH A 79 585 150 HOH TIP . I 5 HOH A 80 586 160 HOH TIP . I 5 HOH A 81 587 161 HOH TIP . I 5 HOH A 82 588 163 HOH TIP . I 5 HOH A 83 589 166 HOH TIP . I 5 HOH A 84 590 167 HOH TIP . I 5 HOH A 85 591 170 HOH TIP . I 5 HOH A 86 592 173 HOH TIP . I 5 HOH A 87 593 177 HOH TIP . I 5 HOH A 88 594 183 HOH TIP . I 5 HOH A 89 595 184 HOH TIP . I 5 HOH A 90 596 188 HOH TIP . I 5 HOH A 91 597 189 HOH TIP . I 5 HOH A 92 598 192 HOH TIP . I 5 HOH A 93 599 193 HOH TIP . I 5 HOH A 94 600 194 HOH TIP . J 5 HOH B 1 507 6 HOH TIP . J 5 HOH B 2 508 7 HOH TIP . J 5 HOH B 3 509 8 HOH TIP . J 5 HOH B 4 510 9 HOH TIP . J 5 HOH B 5 511 10 HOH TIP . J 5 HOH B 6 512 13 HOH TIP . J 5 HOH B 7 513 15 HOH TIP . J 5 HOH B 8 514 16 HOH TIP . J 5 HOH B 9 515 18 HOH TIP . J 5 HOH B 10 516 19 HOH TIP . J 5 HOH B 11 517 21 HOH TIP . J 5 HOH B 12 518 27 HOH TIP . J 5 HOH B 13 519 29 HOH TIP . J 5 HOH B 14 520 30 HOH TIP . J 5 HOH B 15 521 31 HOH TIP . J 5 HOH B 16 522 33 HOH TIP . J 5 HOH B 17 523 39 HOH TIP . J 5 HOH B 18 524 42 HOH TIP . J 5 HOH B 19 525 44 HOH TIP . J 5 HOH B 20 526 46 HOH TIP . J 5 HOH B 21 527 47 HOH TIP . J 5 HOH B 22 528 49 HOH TIP . J 5 HOH B 23 529 50 HOH TIP . J 5 HOH B 24 530 52 HOH TIP . J 5 HOH B 25 531 54 HOH TIP . J 5 HOH B 26 532 55 HOH TIP . J 5 HOH B 27 533 59 HOH TIP . J 5 HOH B 28 534 65 HOH TIP . J 5 HOH B 29 535 70 HOH TIP . J 5 HOH B 30 536 71 HOH TIP . J 5 HOH B 31 537 73 HOH TIP . J 5 HOH B 32 538 77 HOH TIP . J 5 HOH B 33 539 78 HOH TIP . J 5 HOH B 34 540 79 HOH TIP . J 5 HOH B 35 541 80 HOH TIP . J 5 HOH B 36 542 83 HOH TIP . J 5 HOH B 37 543 86 HOH TIP . J 5 HOH B 38 544 87 HOH TIP . J 5 HOH B 39 545 88 HOH TIP . J 5 HOH B 40 546 92 HOH TIP . J 5 HOH B 41 547 93 HOH TIP . J 5 HOH B 42 548 96 HOH TIP . J 5 HOH B 43 549 98 HOH TIP . J 5 HOH B 44 550 99 HOH TIP . J 5 HOH B 45 551 100 HOH TIP . J 5 HOH B 46 552 103 HOH TIP . J 5 HOH B 47 553 104 HOH TIP . J 5 HOH B 48 554 107 HOH TIP . J 5 HOH B 49 555 110 HOH TIP . J 5 HOH B 50 556 111 HOH TIP . J 5 HOH B 51 557 114 HOH TIP . J 5 HOH B 52 558 117 HOH TIP . J 5 HOH B 53 559 118 HOH TIP . J 5 HOH B 54 560 119 HOH TIP . J 5 HOH B 55 561 120 HOH TIP . J 5 HOH B 56 562 122 HOH TIP . J 5 HOH B 57 563 123 HOH TIP . J 5 HOH B 58 564 126 HOH TIP . J 5 HOH B 59 565 127 HOH TIP . J 5 HOH B 60 566 130 HOH TIP . J 5 HOH B 61 567 132 HOH TIP . J 5 HOH B 62 568 135 HOH TIP . J 5 HOH B 63 569 136 HOH TIP . J 5 HOH B 64 570 138 HOH TIP . J 5 HOH B 65 571 140 HOH TIP . J 5 HOH B 66 572 141 HOH TIP . J 5 HOH B 67 573 142 HOH TIP . J 5 HOH B 68 574 146 HOH TIP . J 5 HOH B 69 575 147 HOH TIP . J 5 HOH B 70 576 148 HOH TIP . J 5 HOH B 71 577 149 HOH TIP . J 5 HOH B 72 578 151 HOH TIP . J 5 HOH B 73 579 152 HOH TIP . J 5 HOH B 74 580 153 HOH TIP . J 5 HOH B 75 581 154 HOH TIP . J 5 HOH B 76 582 155 HOH TIP . J 5 HOH B 77 583 156 HOH TIP . J 5 HOH B 78 584 157 HOH TIP . J 5 HOH B 79 585 158 HOH TIP . J 5 HOH B 80 586 159 HOH TIP . J 5 HOH B 81 587 162 HOH TIP . J 5 HOH B 82 588 164 HOH TIP . J 5 HOH B 83 589 165 HOH TIP . J 5 HOH B 84 590 168 HOH TIP . J 5 HOH B 85 591 169 HOH TIP . J 5 HOH B 86 592 171 HOH TIP . J 5 HOH B 87 593 172 HOH TIP . J 5 HOH B 88 594 174 HOH TIP . J 5 HOH B 89 595 175 HOH TIP . J 5 HOH B 90 596 176 HOH TIP . J 5 HOH B 91 597 178 HOH TIP . J 5 HOH B 92 598 179 HOH TIP . J 5 HOH B 93 599 180 HOH TIP . J 5 HOH B 94 600 181 HOH TIP . J 5 HOH B 95 601 182 HOH TIP . J 5 HOH B 96 602 185 HOH TIP . J 5 HOH B 97 603 186 HOH TIP . J 5 HOH B 98 604 187 HOH TIP . J 5 HOH B 99 605 190 HOH TIP . J 5 HOH B 100 606 191 HOH TIP . J 5 HOH B 101 607 195 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 95.023 _atom_site.Cartn_y 31.581 _atom_site.Cartn_z 10.225 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #