data_2HDF # _model_server_result.job_id o2hl6msUms9GKUyGsV33zQ _model_server_result.datetime_utc '2024-12-21 13:00:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":23}' # _entry.id 2HDF # _exptl.entry_id 2HDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.16 _cell.angle_gamma 90 _cell.entry_id 2HDF _cell.length_a 90.593 _cell.length_b 84.336 _cell.length_c 99.458 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 411 A CYS 435 1_555 A SG CYS 415 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C THR 8 A THR 32 1_555 A N MSE 9 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 9 A MSE 33 1_555 A N VAL 10 A VAL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C PRO 115 A PRO 139 1_555 A N MSE 116 A MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 116 A MSE 140 1_555 A N SER 117 A SER 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C GLY 176 A GLY 200 1_555 A N MSE 177 A MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 177 A MSE 201 1_555 A N LYS 178 A LYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 A C GLU 313 A GLU 337 1_555 A N MSE 314 A MSE 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 314 A MSE 338 1_555 A N ARG 315 A ARG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C LYS 318 A LYS 342 1_555 A N MSE 319 A MSE 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 319 A MSE 343 1_555 A N SER 320 A SER 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C ARG 359 A ARG 383 1_555 A N MSE 360 A MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale12 A C MSE 360 A MSE 384 1_555 A N ASP 361 A ASP 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 A C TYR 437 A TYR 461 1_555 A N MSE 438 A MSE 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 A C MSE 438 A MSE 462 1_555 A N GLY 439 A GLY 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C SER 564 A SER 588 1_555 A N MSE 565 A MSE 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 A C MSE 565 A MSE 589 1_555 A N TYR 566 A TYR 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 A C TYR 566 A TYR 590 1_555 A N MSE 567 A MSE 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale18 A C MSE 567 A MSE 591 1_555 A N SER 568 A SER 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale19 A C PHE 632 A PHE 656 1_555 A N MSE 633 A MSE 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 A C MSE 633 A MSE 657 1_555 A N ALA 634 A ALA 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 B SR SR . A SR 23 1_555 A O ASN 99 A ASN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.385 ? metalc ? metalc2 B SR SR . A SR 23 1_555 A OG SER 210 A SER 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc3 B SR SR . A SR 23 1_555 A OD2 ASP 212 A ASP 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc4 B SR SR . A SR 23 1_555 A OD1 ASP 234 A ASP 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2HDF _atom_sites.fract_transf_matrix[1][1] 0.011038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003835 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SR A 1 23 1 SR SR . C 3 OES A 1 21 1 OES OES . D 3 OES A 1 22 2 OES OES . E 4 HOH A 1 1 1 HOH HOH . E 4 HOH A 2 2 2 HOH HOH . E 4 HOH A 3 3 3 HOH HOH . E 4 HOH A 4 4 4 HOH HOH . E 4 HOH A 5 5 5 HOH HOH . E 4 HOH A 6 6 6 HOH HOH . E 4 HOH A 7 7 7 HOH HOH . E 4 HOH A 8 8 8 HOH HOH . E 4 HOH A 9 9 9 HOH HOH . E 4 HOH A 10 10 10 HOH HOH . E 4 HOH A 11 11 11 HOH HOH . E 4 HOH A 12 12 12 HOH HOH . E 4 HOH A 13 13 13 HOH HOH . E 4 HOH A 14 14 14 HOH HOH . E 4 HOH A 15 15 15 HOH HOH . E 4 HOH A 16 16 16 HOH HOH . E 4 HOH A 17 17 17 HOH HOH . E 4 HOH A 18 18 18 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.493 _atom_site.Cartn_y 14.615 _atom_site.Cartn_z 20.063 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 109.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 23 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 87 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #