data_2HDI # _model_server_result.job_id CWnZ0OzqXl3WRGezvHQnMg _model_server_result.datetime_utc '2025-01-10 22:12:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":665}' # _entry.id 2HDI # _exptl.entry_id 2HDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.22 _cell.angle_gamma 90 _cell.entry_id 2HDI _cell.length_a 132.633 _cell.length_b 130.494 _cell.length_c 56.261 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 411 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 435 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 415 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 439 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.147 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 173 n n N1 CM1 LDA sing 174 n n N1 CM2 LDA sing 175 n n N1 C1 LDA sing 176 n n CM1 HM11 LDA sing 177 n n CM1 HM12 LDA sing 178 n n CM1 HM13 LDA sing 179 n n CM2 HM21 LDA sing 180 n n CM2 HM22 LDA sing 181 n n CM2 HM23 LDA sing 182 n n C1 C2 LDA sing 183 n n C1 H11 LDA sing 184 n n C1 H12 LDA sing 185 n n C2 C3 LDA sing 186 n n C2 H21 LDA sing 187 n n C2 H22 LDA sing 188 n n C3 C4 LDA sing 189 n n C3 H31 LDA sing 190 n n C3 H32 LDA sing 191 n n C4 C5 LDA sing 192 n n C4 H41 LDA sing 193 n n C4 H42 LDA sing 194 n n C5 C6 LDA sing 195 n n C5 H51 LDA sing 196 n n C5 H52 LDA sing 197 n n C6 C7 LDA sing 198 n n C6 H61 LDA sing 199 n n C6 H62 LDA sing 200 n n C7 C8 LDA sing 201 n n C7 H71 LDA sing 202 n n C7 H72 LDA sing 203 n n C8 C9 LDA sing 204 n n C8 H81 LDA sing 205 n n C8 H82 LDA sing 206 n n C9 C10 LDA sing 207 n n C9 H91 LDA sing 208 n n C9 H92 LDA sing 209 n n C10 C11 LDA sing 210 n n C10 H101 LDA sing 211 n n C10 H102 LDA sing 212 n n C11 C12 LDA sing 213 n n C11 H111 LDA sing 214 n n C11 H112 LDA sing 215 n n C12 H121 LDA sing 216 n n C12 H122 LDA sing 217 n n C12 H123 LDA sing 218 n n # _atom_sites.entry_id 2HDI _atom_sites.fract_transf_matrix[1][1] 0.00754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001495 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LDA A 1 664 4 LDA LDA . D 3 LDA A 1 665 5 LDA LDA . E 4 HOH A 1 666 1 HOH HOH . E 4 HOH A 2 667 2 HOH HOH . E 4 HOH A 3 668 3 HOH HOH . E 4 HOH A 4 669 4 HOH HOH . E 4 HOH A 5 670 5 HOH HOH . E 4 HOH A 6 671 6 HOH HOH . E 4 HOH A 7 672 7 HOH HOH . E 4 HOH A 8 673 8 HOH HOH . E 4 HOH A 9 674 9 HOH HOH . E 4 HOH A 10 675 10 HOH HOH . E 4 HOH A 11 676 11 HOH HOH . E 4 HOH A 12 677 13 HOH HOH . E 4 HOH A 13 678 14 HOH HOH . E 4 HOH A 14 679 17 HOH HOH . E 4 HOH A 15 680 18 HOH HOH . E 4 HOH A 16 681 19 HOH HOH . E 4 HOH A 17 682 20 HOH HOH . E 4 HOH A 18 683 23 HOH HOH . E 4 HOH A 19 684 24 HOH HOH . E 4 HOH A 20 685 29 HOH HOH . E 4 HOH A 21 686 30 HOH HOH . E 4 HOH A 22 687 31 HOH HOH . E 4 HOH A 23 688 32 HOH HOH . E 4 HOH A 24 689 35 HOH HOH . E 4 HOH A 25 690 36 HOH HOH . E 4 HOH A 26 691 37 HOH HOH . E 4 HOH A 27 692 38 HOH HOH . E 4 HOH A 28 693 40 HOH HOH . E 4 HOH A 29 694 41 HOH HOH . E 4 HOH A 30 695 42 HOH HOH . E 4 HOH A 31 696 43 HOH HOH . E 4 HOH A 32 697 44 HOH HOH . E 4 HOH A 33 698 45 HOH HOH . E 4 HOH A 34 699 46 HOH HOH . E 4 HOH A 35 700 49 HOH HOH . E 4 HOH A 36 701 52 HOH HOH . E 4 HOH A 37 702 53 HOH HOH . E 4 HOH A 38 703 54 HOH HOH . E 4 HOH A 39 704 55 HOH HOH . E 4 HOH A 40 705 56 HOH HOH . E 4 HOH A 41 706 58 HOH HOH . E 4 HOH A 42 707 59 HOH HOH . E 4 HOH A 43 708 61 HOH HOH . E 4 HOH A 44 709 62 HOH HOH . E 4 HOH A 45 710 63 HOH HOH . E 4 HOH A 46 711 64 HOH HOH . E 4 HOH A 47 712 65 HOH HOH . E 4 HOH A 48 713 68 HOH HOH . E 4 HOH A 49 714 69 HOH HOH . E 4 HOH A 50 715 70 HOH HOH . E 4 HOH A 51 716 71 HOH HOH . E 4 HOH A 52 717 72 HOH HOH . E 4 HOH A 53 718 73 HOH HOH . E 4 HOH A 54 719 74 HOH HOH . E 4 HOH A 55 720 75 HOH HOH . E 4 HOH A 56 721 76 HOH HOH . E 4 HOH A 57 722 77 HOH HOH . E 4 HOH A 58 723 78 HOH HOH . E 4 HOH A 59 724 79 HOH HOH . E 4 HOH A 60 725 80 HOH HOH . E 4 HOH A 61 726 81 HOH HOH . E 4 HOH A 62 727 82 HOH HOH . E 4 HOH A 63 728 83 HOH HOH . E 4 HOH A 64 729 86 HOH HOH . E 4 HOH A 65 730 88 HOH HOH . E 4 HOH A 66 731 89 HOH HOH . E 4 HOH A 67 732 90 HOH HOH . E 4 HOH A 68 733 91 HOH HOH . E 4 HOH A 69 734 93 HOH HOH . E 4 HOH A 70 735 94 HOH HOH . E 4 HOH A 71 736 96 HOH HOH . E 4 HOH A 72 737 98 HOH HOH . E 4 HOH A 73 738 99 HOH HOH . E 4 HOH A 74 739 101 HOH HOH . E 4 HOH A 75 740 102 HOH HOH . E 4 HOH A 76 741 103 HOH HOH . E 4 HOH A 77 742 104 HOH HOH . E 4 HOH A 78 743 105 HOH HOH . E 4 HOH A 79 744 106 HOH HOH . E 4 HOH A 80 745 107 HOH HOH . E 4 HOH A 81 746 108 HOH HOH . E 4 HOH A 82 747 109 HOH HOH . E 4 HOH A 83 748 110 HOH HOH . E 4 HOH A 84 749 112 HOH HOH . E 4 HOH A 85 750 113 HOH HOH . E 4 HOH A 86 751 114 HOH HOH . E 4 HOH A 87 752 115 HOH HOH . E 4 HOH A 88 753 116 HOH HOH . E 4 HOH A 89 754 118 HOH HOH . E 4 HOH A 90 755 119 HOH HOH . E 4 HOH A 91 756 121 HOH HOH . E 4 HOH A 92 757 122 HOH HOH . E 4 HOH A 93 758 123 HOH HOH . E 4 HOH A 94 759 124 HOH HOH . E 4 HOH A 95 760 126 HOH HOH . E 4 HOH A 96 761 127 HOH HOH . E 4 HOH A 97 762 140 HOH HOH . E 4 HOH A 98 763 141 HOH HOH . E 4 HOH A 99 764 142 HOH HOH . E 4 HOH A 100 765 143 HOH HOH . E 4 HOH A 101 766 144 HOH HOH . E 4 HOH A 102 767 145 HOH HOH . E 4 HOH A 103 768 146 HOH HOH . E 4 HOH A 104 769 147 HOH HOH . E 4 HOH A 105 770 148 HOH HOH . E 4 HOH A 106 771 149 HOH HOH . E 4 HOH A 107 772 150 HOH HOH . E 4 HOH A 108 773 151 HOH HOH . E 4 HOH A 109 774 152 HOH HOH . E 4 HOH A 110 775 153 HOH HOH . E 4 HOH A 111 776 154 HOH HOH . E 4 HOH A 112 777 156 HOH HOH . E 4 HOH A 113 778 157 HOH HOH . E 4 HOH A 114 779 158 HOH HOH . E 4 HOH A 115 780 160 HOH HOH . E 4 HOH A 116 781 161 HOH HOH . E 4 HOH A 117 782 162 HOH HOH . E 4 HOH A 118 783 163 HOH HOH . E 4 HOH A 119 784 164 HOH HOH . E 4 HOH A 120 785 165 HOH HOH . E 4 HOH A 121 786 167 HOH HOH . E 4 HOH A 122 787 168 HOH HOH . E 4 HOH A 123 788 169 HOH HOH . E 4 HOH A 124 789 170 HOH HOH . E 4 HOH A 125 790 171 HOH HOH . E 4 HOH A 126 791 172 HOH HOH . E 4 HOH A 127 792 173 HOH HOH . E 4 HOH A 128 793 174 HOH HOH . E 4 HOH A 129 794 175 HOH HOH . E 4 HOH A 130 795 176 HOH HOH . E 4 HOH A 131 796 177 HOH HOH . E 4 HOH A 132 797 179 HOH HOH . E 4 HOH A 133 798 180 HOH HOH . E 4 HOH A 134 799 182 HOH HOH . E 4 HOH A 135 800 187 HOH HOH . E 4 HOH A 136 801 188 HOH HOH . E 4 HOH A 137 802 189 HOH HOH . E 4 HOH A 138 803 191 HOH HOH . E 4 HOH A 139 804 192 HOH HOH . E 4 HOH A 140 805 193 HOH HOH . E 4 HOH A 141 806 194 HOH HOH . E 4 HOH A 142 807 196 HOH HOH . E 4 HOH A 143 808 197 HOH HOH . E 4 HOH A 144 809 198 HOH HOH . E 4 HOH A 145 810 199 HOH HOH . E 4 HOH A 146 811 200 HOH HOH . E 4 HOH A 147 812 202 HOH HOH . E 4 HOH A 148 813 203 HOH HOH . E 4 HOH A 149 814 204 HOH HOH . E 4 HOH A 150 815 205 HOH HOH . E 4 HOH A 151 816 206 HOH HOH . E 4 HOH A 152 817 207 HOH HOH . E 4 HOH A 153 818 208 HOH HOH . E 4 HOH A 154 819 210 HOH HOH . E 4 HOH A 155 820 213 HOH HOH . E 4 HOH A 156 821 215 HOH HOH . E 4 HOH A 157 822 216 HOH HOH . E 4 HOH A 158 823 217 HOH HOH . E 4 HOH A 159 824 218 HOH HOH . E 4 HOH A 160 825 219 HOH HOH . E 4 HOH A 161 826 220 HOH HOH . E 4 HOH A 162 827 223 HOH HOH . E 4 HOH A 163 828 224 HOH HOH . E 4 HOH A 164 829 228 HOH HOH . E 4 HOH A 165 830 229 HOH HOH . E 4 HOH A 166 831 230 HOH HOH . E 4 HOH A 167 832 234 HOH HOH . E 4 HOH A 168 833 235 HOH HOH . E 4 HOH A 169 834 236 HOH HOH . E 4 HOH A 170 835 237 HOH HOH . E 4 HOH A 171 836 238 HOH HOH . E 4 HOH A 172 837 241 HOH HOH . E 4 HOH A 173 838 242 HOH HOH . E 4 HOH A 174 839 243 HOH HOH . E 4 HOH A 175 840 244 HOH HOH . E 4 HOH A 176 841 245 HOH HOH . E 4 HOH A 177 842 246 HOH HOH . E 4 HOH A 178 843 247 HOH HOH . E 4 HOH A 179 844 249 HOH HOH . E 4 HOH A 180 845 250 HOH HOH . E 4 HOH A 181 846 252 HOH HOH . E 4 HOH A 182 847 253 HOH HOH . E 4 HOH A 183 848 254 HOH HOH . E 4 HOH A 184 849 255 HOH HOH . E 4 HOH A 185 850 257 HOH HOH . E 4 HOH A 186 851 258 HOH HOH . E 4 HOH A 187 852 259 HOH HOH . E 4 HOH A 188 853 260 HOH HOH . E 4 HOH A 189 854 261 HOH HOH . F 4 HOH B 1 12 12 HOH HOH . F 4 HOH B 2 15 15 HOH HOH . F 4 HOH B 3 16 16 HOH HOH . F 4 HOH B 4 21 21 HOH HOH . F 4 HOH B 5 22 22 HOH HOH . F 4 HOH B 6 25 25 HOH HOH . F 4 HOH B 7 26 26 HOH HOH . F 4 HOH B 8 27 27 HOH HOH . F 4 HOH B 9 28 28 HOH HOH . F 4 HOH B 10 33 33 HOH HOH . F 4 HOH B 11 34 34 HOH HOH . F 4 HOH B 12 39 39 HOH HOH . F 4 HOH B 13 47 47 HOH HOH . F 4 HOH B 14 48 48 HOH HOH . F 4 HOH B 15 50 50 HOH HOH . F 4 HOH B 16 51 51 HOH HOH . F 4 HOH B 17 57 57 HOH HOH . F 4 HOH B 18 60 60 HOH HOH . F 4 HOH B 19 66 66 HOH HOH . F 4 HOH B 20 67 67 HOH HOH . F 4 HOH B 21 84 84 HOH HOH . F 4 HOH B 22 85 85 HOH HOH . F 4 HOH B 23 87 87 HOH HOH . F 4 HOH B 24 92 92 HOH HOH . F 4 HOH B 25 95 95 HOH HOH . F 4 HOH B 26 97 97 HOH HOH . F 4 HOH B 27 100 100 HOH HOH . F 4 HOH B 28 111 111 HOH HOH . F 4 HOH B 29 117 117 HOH HOH . F 4 HOH B 30 120 120 HOH HOH . F 4 HOH B 31 125 125 HOH HOH . F 4 HOH B 32 128 128 HOH HOH . F 4 HOH B 33 129 129 HOH HOH . F 4 HOH B 34 130 130 HOH HOH . F 4 HOH B 35 131 131 HOH HOH . F 4 HOH B 36 132 132 HOH HOH . F 4 HOH B 37 133 133 HOH HOH . F 4 HOH B 38 134 134 HOH HOH . F 4 HOH B 39 135 135 HOH HOH . F 4 HOH B 40 138 138 HOH HOH . F 4 HOH B 41 139 139 HOH HOH . F 4 HOH B 42 166 166 HOH HOH . F 4 HOH B 43 178 178 HOH HOH . F 4 HOH B 44 181 181 HOH HOH . F 4 HOH B 45 183 183 HOH HOH . F 4 HOH B 46 184 184 HOH HOH . F 4 HOH B 47 185 185 HOH HOH . F 4 HOH B 48 186 186 HOH HOH . F 4 HOH B 49 195 195 HOH HOH . F 4 HOH B 50 201 201 HOH HOH . F 4 HOH B 51 209 209 HOH HOH . F 4 HOH B 52 211 211 HOH HOH . F 4 HOH B 53 212 212 HOH HOH . F 4 HOH B 54 214 214 HOH HOH . F 4 HOH B 55 221 221 HOH HOH . F 4 HOH B 56 225 225 HOH HOH . F 4 HOH B 57 226 226 HOH HOH . F 4 HOH B 58 227 227 HOH HOH . F 4 HOH B 59 231 231 HOH HOH . F 4 HOH B 60 232 232 HOH HOH . F 4 HOH B 61 233 233 HOH HOH . F 4 HOH B 62 239 239 HOH HOH . F 4 HOH B 63 240 240 HOH HOH . F 4 HOH B 64 248 248 HOH HOH . F 4 HOH B 65 251 251 HOH HOH . F 4 HOH B 66 256 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 LDA . . . D 3 41.15 -29.809 33.286 1 66.63 ? C5 LDA 665 A 1 HETATM 2 C C6 LDA . . . D 3 42.574 -30.288 33.013 1 63.54 ? C6 LDA 665 A 1 HETATM 3 C C7 LDA . . . D 3 42.744 -30.757 31.568 1 54 ? C7 LDA 665 A 1 HETATM 4 C C8 LDA . . . D 3 42.957 -32.265 31.525 1 50.58 ? C8 LDA 665 A 1 HETATM 5 C C9 LDA . . . D 3 43.538 -32.772 30.205 1 47.45 ? C9 LDA 665 A 1 HETATM 6 C C10 LDA . . . D 3 43.716 -34.29 30.279 1 45.98 ? C10 LDA 665 A 1 HETATM 7 C C11 LDA . . . D 3 44.665 -34.844 29.219 1 48.51 ? C11 LDA 665 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #