data_2HDO # _model_server_result.job_id wla-kFplmFgfCiPYA1VXvA _model_server_result.datetime_utc '2024-12-07 05:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":209}' # _entry.id 2HDO # _exptl.entry_id 2HDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2HDO _cell.length_a 86.89 _cell.length_b 86.89 _cell.length_c 47.19 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N THR 3 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C LEU 7 A LEU 6 1_555 A N MSE 8 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C MSE 8 A MSE 7 1_555 A N PHE 9 A PHE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C VAL 25 A VAL 24 1_555 A N MSE 26 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 26 A MSE 25 1_555 A N ARG 27 A ARG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale6 A C PRO 47 A PRO 46 1_555 A N MSE 48 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 48 A MSE 47 1_555 A N ALA 49 A ALA 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C ALA 53 A ALA 52 1_555 A N MSE 54 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 A C MSE 54 A MSE 53 1_555 A N THR 55 A THR 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C VAL 74 A VAL 73 1_555 A N MSE 75 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 A C MSE 75 A MSE 74 1_555 A N ALA 76 A ALA 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C GLY 115 A GLY 114 1_555 A N MSE 116 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale13 A C MSE 116 A MSE 115 1_555 A N ARG 117 A ARG 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 A C PHE 121 A PHE 120 1_555 A N MSE 122 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 A C MSE 122 A MSE 121 1_555 A N MSE 123 A MSE 122 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale16 A C MSE 122 A MSE 121 1_555 A N MSE 123 A MSE 122 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.335 ? covale ? covale17 A C MSE 123 A MSE 122 1_555 A N ARG 124 A ARG 123 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale18 A C MSE 123 A MSE 122 1_555 A N ARG 124 A ARG 123 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 A C ARG 124 A ARG 123 1_555 A N MSE 125 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale20 A C MSE 125 A MSE 124 1_555 A N ALA 126 A ALA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale21 A C GLY 184 A GLY 183 1_555 A N MSE 185 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale22 A C MSE 185 A MSE 184 1_555 A N ASP 186 A ASP 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 266 n n P O2 PO4 sing 267 n n P O3 PO4 sing 268 n n P O4 PO4 sing 269 n n # _atom_sites.entry_id 2HDO _atom_sites.fract_transf_matrix[1][1] 0.01151 _atom_sites.fract_transf_matrix[1][2] 0.00665 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 209 1 PO4 PO4 . C 2 PO4 A 1 210 2 PO4 PO4 . D 3 HOH A 1 211 3 HOH HOH . D 3 HOH A 2 212 4 HOH HOH . D 3 HOH A 3 213 5 HOH HOH . D 3 HOH A 4 214 6 HOH HOH . D 3 HOH A 5 215 7 HOH HOH . D 3 HOH A 6 216 8 HOH HOH . D 3 HOH A 7 217 9 HOH HOH . D 3 HOH A 8 218 10 HOH HOH . D 3 HOH A 9 219 11 HOH HOH . D 3 HOH A 10 220 12 HOH HOH . D 3 HOH A 11 221 13 HOH HOH . D 3 HOH A 12 222 14 HOH HOH . D 3 HOH A 13 223 15 HOH HOH . D 3 HOH A 14 224 16 HOH HOH . D 3 HOH A 15 225 17 HOH HOH . D 3 HOH A 16 226 18 HOH HOH . D 3 HOH A 17 227 19 HOH HOH . D 3 HOH A 18 228 20 HOH HOH . D 3 HOH A 19 229 21 HOH HOH . D 3 HOH A 20 230 22 HOH HOH . D 3 HOH A 21 231 23 HOH HOH . D 3 HOH A 22 232 24 HOH HOH . D 3 HOH A 23 233 25 HOH HOH . D 3 HOH A 24 234 26 HOH HOH . D 3 HOH A 25 235 27 HOH HOH . D 3 HOH A 26 236 28 HOH HOH . D 3 HOH A 27 237 29 HOH HOH . D 3 HOH A 28 238 30 HOH HOH . D 3 HOH A 29 239 31 HOH HOH . D 3 HOH A 30 240 32 HOH HOH . D 3 HOH A 31 241 33 HOH HOH . D 3 HOH A 32 242 34 HOH HOH . D 3 HOH A 33 243 35 HOH HOH . D 3 HOH A 34 244 36 HOH HOH . D 3 HOH A 35 245 37 HOH HOH . D 3 HOH A 36 246 38 HOH HOH . D 3 HOH A 37 247 39 HOH HOH . D 3 HOH A 38 248 40 HOH HOH . D 3 HOH A 39 249 41 HOH HOH . D 3 HOH A 40 250 42 HOH HOH . D 3 HOH A 41 251 43 HOH HOH . D 3 HOH A 42 252 44 HOH HOH . D 3 HOH A 43 253 45 HOH HOH . D 3 HOH A 44 254 46 HOH HOH . D 3 HOH A 45 255 47 HOH HOH . D 3 HOH A 46 256 48 HOH HOH . D 3 HOH A 47 257 49 HOH HOH . D 3 HOH A 48 258 50 HOH HOH . D 3 HOH A 49 259 51 HOH HOH . D 3 HOH A 50 260 52 HOH HOH . D 3 HOH A 51 261 53 HOH HOH . D 3 HOH A 52 262 54 HOH HOH . D 3 HOH A 53 263 55 HOH HOH . D 3 HOH A 54 264 56 HOH HOH . D 3 HOH A 55 265 57 HOH HOH . D 3 HOH A 56 266 58 HOH HOH . D 3 HOH A 57 267 59 HOH HOH . D 3 HOH A 58 268 60 HOH HOH . D 3 HOH A 59 269 61 HOH HOH . D 3 HOH A 60 270 62 HOH HOH . D 3 HOH A 61 271 63 HOH HOH . D 3 HOH A 62 272 64 HOH HOH . D 3 HOH A 63 273 65 HOH HOH . D 3 HOH A 64 274 66 HOH HOH . D 3 HOH A 65 275 67 HOH HOH . D 3 HOH A 66 276 68 HOH HOH . D 3 HOH A 67 277 69 HOH HOH . D 3 HOH A 68 278 70 HOH HOH . D 3 HOH A 69 279 71 HOH HOH . D 3 HOH A 70 280 72 HOH HOH . D 3 HOH A 71 281 73 HOH HOH . D 3 HOH A 72 282 74 HOH HOH . D 3 HOH A 73 283 75 HOH HOH . D 3 HOH A 74 284 76 HOH HOH . D 3 HOH A 75 285 77 HOH HOH . D 3 HOH A 76 286 78 HOH HOH . D 3 HOH A 77 287 79 HOH HOH . D 3 HOH A 78 288 80 HOH HOH . D 3 HOH A 79 289 81 HOH HOH . D 3 HOH A 80 290 82 HOH HOH . D 3 HOH A 81 291 83 HOH HOH . D 3 HOH A 82 292 84 HOH HOH . D 3 HOH A 83 293 85 HOH HOH . D 3 HOH A 84 294 86 HOH HOH . D 3 HOH A 85 295 87 HOH HOH . D 3 HOH A 86 296 88 HOH HOH . D 3 HOH A 87 297 89 HOH HOH . D 3 HOH A 88 298 90 HOH HOH . D 3 HOH A 89 299 91 HOH HOH . D 3 HOH A 90 300 92 HOH HOH . D 3 HOH A 91 301 93 HOH HOH . D 3 HOH A 92 302 94 HOH HOH . D 3 HOH A 93 303 95 HOH HOH . D 3 HOH A 94 304 96 HOH HOH . D 3 HOH A 95 305 97 HOH HOH . D 3 HOH A 96 306 98 HOH HOH . D 3 HOH A 97 307 99 HOH HOH . D 3 HOH A 98 308 100 HOH HOH . D 3 HOH A 99 309 101 HOH HOH . D 3 HOH A 100 310 102 HOH HOH . D 3 HOH A 101 311 103 HOH HOH . D 3 HOH A 102 312 104 HOH HOH . D 3 HOH A 103 313 105 HOH HOH . D 3 HOH A 104 314 106 HOH HOH . D 3 HOH A 105 315 107 HOH HOH . D 3 HOH A 106 316 108 HOH HOH . D 3 HOH A 107 317 109 HOH HOH . D 3 HOH A 108 318 110 HOH HOH . D 3 HOH A 109 319 111 HOH HOH . D 3 HOH A 110 320 112 HOH HOH . D 3 HOH A 111 321 113 HOH HOH . D 3 HOH A 112 322 114 HOH HOH . D 3 HOH A 113 323 115 HOH HOH . D 3 HOH A 114 324 116 HOH HOH . D 3 HOH A 115 325 117 HOH HOH . D 3 HOH A 116 326 118 HOH HOH . D 3 HOH A 117 327 119 HOH HOH . D 3 HOH A 118 328 120 HOH HOH . D 3 HOH A 119 329 121 HOH HOH . D 3 HOH A 120 330 122 HOH HOH . D 3 HOH A 121 331 123 HOH HOH . D 3 HOH A 122 332 124 HOH HOH . D 3 HOH A 123 333 125 HOH HOH . D 3 HOH A 124 334 126 HOH HOH . D 3 HOH A 125 335 127 HOH HOH . D 3 HOH A 126 336 128 HOH HOH . D 3 HOH A 127 337 129 HOH HOH . D 3 HOH A 128 338 130 HOH HOH . D 3 HOH A 129 339 131 HOH HOH . D 3 HOH A 130 340 132 HOH HOH . D 3 HOH A 131 341 133 HOH HOH . D 3 HOH A 132 342 134 HOH HOH . D 3 HOH A 133 343 135 HOH HOH . D 3 HOH A 134 344 136 HOH HOH . D 3 HOH A 135 345 137 HOH HOH . D 3 HOH A 136 346 138 HOH HOH . D 3 HOH A 137 347 139 HOH HOH . D 3 HOH A 138 348 140 HOH HOH . D 3 HOH A 139 349 141 HOH HOH . D 3 HOH A 140 350 142 HOH HOH . D 3 HOH A 141 351 143 HOH HOH . D 3 HOH A 142 352 144 HOH HOH . D 3 HOH A 143 353 145 HOH HOH . D 3 HOH A 144 354 146 HOH HOH . D 3 HOH A 145 355 147 HOH HOH . D 3 HOH A 146 356 148 HOH HOH . D 3 HOH A 147 357 149 HOH HOH . D 3 HOH A 148 358 150 HOH HOH . D 3 HOH A 149 359 151 HOH HOH . D 3 HOH A 150 360 152 HOH HOH . D 3 HOH A 151 361 153 HOH HOH . D 3 HOH A 152 362 154 HOH HOH . D 3 HOH A 153 363 155 HOH HOH . D 3 HOH A 154 364 156 HOH HOH . D 3 HOH A 155 365 157 HOH HOH . D 3 HOH A 156 366 158 HOH HOH . D 3 HOH A 157 367 159 HOH HOH . D 3 HOH A 158 368 160 HOH HOH . D 3 HOH A 159 369 161 HOH HOH . D 3 HOH A 160 370 162 HOH HOH . D 3 HOH A 161 371 163 HOH HOH . D 3 HOH A 162 372 164 HOH HOH . D 3 HOH A 163 373 165 HOH HOH . D 3 HOH A 164 374 166 HOH HOH . D 3 HOH A 165 375 167 HOH HOH . D 3 HOH A 166 376 168 HOH HOH . D 3 HOH A 167 377 169 HOH HOH . D 3 HOH A 168 378 170 HOH HOH . D 3 HOH A 169 379 171 HOH HOH . D 3 HOH A 170 380 172 HOH HOH . D 3 HOH A 171 381 173 HOH HOH . D 3 HOH A 172 382 174 HOH HOH . D 3 HOH A 173 383 175 HOH HOH . D 3 HOH A 174 384 176 HOH HOH . D 3 HOH A 175 385 177 HOH HOH . D 3 HOH A 176 386 178 HOH HOH . D 3 HOH A 177 387 179 HOH HOH . D 3 HOH A 178 388 180 HOH HOH . D 3 HOH A 179 389 181 HOH HOH . D 3 HOH A 180 390 182 HOH HOH . D 3 HOH A 181 391 183 HOH HOH . D 3 HOH A 182 392 184 HOH HOH . D 3 HOH A 183 393 185 HOH HOH . D 3 HOH A 184 394 186 HOH HOH . D 3 HOH A 185 395 187 HOH HOH . D 3 HOH A 186 396 188 HOH HOH . D 3 HOH A 187 397 189 HOH HOH . D 3 HOH A 188 398 190 HOH HOH . D 3 HOH A 189 399 191 HOH HOH . D 3 HOH A 190 400 192 HOH HOH . D 3 HOH A 191 401 193 HOH HOH . D 3 HOH A 192 402 194 HOH HOH . D 3 HOH A 193 403 195 HOH HOH . D 3 HOH A 194 404 196 HOH HOH . D 3 HOH A 195 405 197 HOH HOH . D 3 HOH A 196 406 198 HOH HOH . D 3 HOH A 197 407 199 HOH HOH . D 3 HOH A 198 408 200 HOH HOH . D 3 HOH A 199 409 201 HOH HOH . D 3 HOH A 200 410 202 HOH HOH . D 3 HOH A 201 411 203 HOH HOH . D 3 HOH A 202 412 204 HOH HOH . D 3 HOH A 203 413 205 HOH HOH . D 3 HOH A 204 414 206 HOH HOH . D 3 HOH A 205 415 207 HOH HOH . D 3 HOH A 206 416 208 HOH HOH . D 3 HOH A 207 417 209 HOH HOH . D 3 HOH A 208 418 210 HOH HOH . D 3 HOH A 209 419 211 HOH HOH . D 3 HOH A 210 420 212 HOH HOH . D 3 HOH A 211 421 213 HOH HOH . D 3 HOH A 212 422 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 22.624 20.002 21.555 1 30.7 ? P PO4 209 A 1 HETATM 2 O O1 PO4 . . . B 2 21.645 20.038 22.76 1 19.81 ? O1 PO4 209 A 1 HETATM 3 O O2 PO4 . . . B 2 24.122 19.699 21.776 1 22.44 ? O2 PO4 209 A 1 HETATM 4 O O3 PO4 . . . B 2 22.528 21.378 20.851 1 30.78 ? O3 PO4 209 A 1 HETATM 5 O O4 PO4 . . . B 2 22.129 18.933 20.574 1 34.84 ? O4 PO4 209 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 5 #