data_2HE5 # _model_server_result.job_id '_Vs63jCfpzH53vAwzwWiBg' _model_server_result.datetime_utc '2024-11-24 01:56:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2he5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 2HE5 # _exptl.entry_id 2HE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.6 _cell.angle_gamma 90 _cell.entry_id 2HE5 _cell.length_a 56.48 _cell.length_b 166.76 _cell.length_c 69.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,H,I,L,N 1 1 B,D,F,J,K,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 K N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 252 n n PA O2A NDP sing 253 n n PA O5B NDP sing 254 n n PA O3 NDP sing 255 n n O2A HOA2 NDP sing 256 n n O5B C5B NDP sing 257 n n C5B C4B NDP sing 258 n n C5B H51A NDP sing 259 n n C5B H52A NDP sing 260 n n C4B O4B NDP sing 261 n n C4B C3B NDP sing 262 n n C4B H4B NDP sing 263 n n O4B C1B NDP sing 264 n n C3B O3B NDP sing 265 n n C3B C2B NDP sing 266 n n C3B H3B NDP sing 267 n n O3B HO3A NDP sing 268 n n C2B O2B NDP sing 269 n n C2B C1B NDP sing 270 n n C2B H2B NDP sing 271 n n O2B P2B NDP sing 272 n n C1B N9A NDP sing 273 n n C1B H1B NDP sing 274 n n N9A C8A NDP sing 275 n y N9A C4A NDP sing 276 n y C8A N7A NDP doub 277 n y C8A H8A NDP sing 278 n n N7A C5A NDP sing 279 n y C5A C6A NDP sing 280 n y C5A C4A NDP doub 281 n y C6A N6A NDP sing 282 n n C6A N1A NDP doub 283 n y N6A H61A NDP sing 284 n n N6A H62A NDP sing 285 n n N1A C2A NDP sing 286 n y C2A N3A NDP doub 287 n y C2A H2A NDP sing 288 n n N3A C4A NDP sing 289 n y O3 PN NDP sing 290 n n PN O1N NDP doub 291 n n PN O2N NDP sing 292 n n PN O5D NDP sing 293 n n O2N H21N NDP sing 294 n n O5D C5D NDP sing 295 n n C5D C4D NDP sing 296 n n C5D H51N NDP sing 297 n n C5D H52N NDP sing 298 n n C4D O4D NDP sing 299 n n C4D C3D NDP sing 300 n n C4D H4D NDP sing 301 n n O4D C1D NDP sing 302 n n C3D O3D NDP sing 303 n n C3D C2D NDP sing 304 n n C3D H3D NDP sing 305 n n O3D HO3N NDP sing 306 n n C2D O2D NDP sing 307 n n C2D C1D NDP sing 308 n n C2D H2D NDP sing 309 n n O2D HO2N NDP sing 310 n n C1D N1N NDP sing 311 n n C1D H1D NDP sing 312 n n N1N C2N NDP sing 313 n n N1N C6N NDP sing 314 n n C2N C3N NDP doub 315 n n C2N H2N NDP sing 316 n n C3N C7N NDP sing 317 n n C3N C4N NDP sing 318 n n C7N O7N NDP doub 319 n n C7N N7N NDP sing 320 n n N7N H71N NDP sing 321 n n N7N H72N NDP sing 322 n n C4N C5N NDP sing 323 n n C4N H41N NDP sing 324 n n C4N H42N NDP sing 325 n n C5N C6N NDP doub 326 n n C5N H5N NDP sing 327 n n C6N H6N NDP sing 328 n n P2B O1X NDP doub 329 n n P2B O2X NDP sing 330 n n P2B O3X NDP sing 331 n n O2X HOP2 NDP sing 332 n n O3X HOP3 NDP sing 333 n n # _atom_sites.entry_id 2HE5 _atom_sites.fract_transf_matrix[1][1] 0.017705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002362 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 401 401 NDP NDP . F 2 NDP B 1 401 401 NDP NDP . G 3 ACT C 1 324 202 ACT ACT . H 2 NDP C 1 401 401 NDP NDP . I 4 BME C 1 501 501 BME SEO . J 3 ACT D 1 324 201 ACT ACT . K 2 NDP D 1 401 401 NDP NDP . L 5 HOH A 1 402 2 HOH HOH . L 5 HOH A 2 403 6 HOH HOH . L 5 HOH A 3 404 7 HOH HOH . L 5 HOH A 4 405 9 HOH HOH . L 5 HOH A 5 406 10 HOH HOH . L 5 HOH A 6 407 13 HOH HOH . L 5 HOH A 7 408 14 HOH HOH . L 5 HOH A 8 409 18 HOH HOH . L 5 HOH A 9 410 22 HOH HOH . L 5 HOH A 10 411 23 HOH HOH . L 5 HOH A 11 412 24 HOH HOH . L 5 HOH A 12 413 25 HOH HOH . L 5 HOH A 13 414 29 HOH HOH . L 5 HOH A 14 415 36 HOH HOH . L 5 HOH A 15 416 37 HOH HOH . L 5 HOH A 16 417 41 HOH HOH . L 5 HOH A 17 418 42 HOH HOH . L 5 HOH A 18 419 44 HOH HOH . L 5 HOH A 19 420 45 HOH HOH . L 5 HOH A 20 421 50 HOH HOH . L 5 HOH A 21 422 55 HOH HOH . L 5 HOH A 22 423 57 HOH HOH . L 5 HOH A 23 424 64 HOH HOH . L 5 HOH A 24 425 66 HOH HOH . L 5 HOH A 25 426 67 HOH HOH . L 5 HOH A 26 427 68 HOH HOH . L 5 HOH A 27 428 70 HOH HOH . L 5 HOH A 28 429 71 HOH HOH . L 5 HOH A 29 430 74 HOH HOH . L 5 HOH A 30 431 77 HOH HOH . L 5 HOH A 31 432 81 HOH HOH . L 5 HOH A 32 433 82 HOH HOH . L 5 HOH A 33 434 86 HOH HOH . L 5 HOH A 34 435 87 HOH HOH . L 5 HOH A 35 436 88 HOH HOH . L 5 HOH A 36 437 89 HOH HOH . L 5 HOH A 37 438 90 HOH HOH . L 5 HOH A 38 439 91 HOH HOH . L 5 HOH A 39 440 104 HOH HOH . L 5 HOH A 40 441 106 HOH HOH . L 5 HOH A 41 442 107 HOH HOH . L 5 HOH A 42 443 114 HOH HOH . L 5 HOH A 43 444 119 HOH HOH . L 5 HOH A 44 445 126 HOH HOH . L 5 HOH A 45 446 128 HOH HOH . L 5 HOH A 46 447 137 HOH HOH . M 5 HOH B 1 402 3 HOH HOH . M 5 HOH B 2 403 12 HOH HOH . M 5 HOH B 3 404 17 HOH HOH . M 5 HOH B 4 405 19 HOH HOH . M 5 HOH B 5 406 30 HOH HOH . M 5 HOH B 6 407 31 HOH HOH . M 5 HOH B 7 408 40 HOH HOH . M 5 HOH B 8 409 43 HOH HOH . M 5 HOH B 9 410 46 HOH HOH . M 5 HOH B 10 411 47 HOH HOH . M 5 HOH B 11 412 48 HOH HOH . M 5 HOH B 12 413 52 HOH HOH . M 5 HOH B 13 414 53 HOH HOH . M 5 HOH B 14 415 59 HOH HOH . M 5 HOH B 15 416 61 HOH HOH . M 5 HOH B 16 417 72 HOH HOH . M 5 HOH B 17 418 73 HOH HOH . M 5 HOH B 18 419 78 HOH HOH . M 5 HOH B 19 420 80 HOH HOH . M 5 HOH B 20 421 94 HOH HOH . M 5 HOH B 21 422 95 HOH HOH . M 5 HOH B 22 423 98 HOH HOH . M 5 HOH B 23 424 99 HOH HOH . M 5 HOH B 24 425 102 HOH HOH . M 5 HOH B 25 426 111 HOH HOH . M 5 HOH B 26 427 113 HOH HOH . M 5 HOH B 27 428 121 HOH HOH . M 5 HOH B 28 429 122 HOH HOH . M 5 HOH B 29 430 125 HOH HOH . N 5 HOH C 1 502 8 HOH HOH . N 5 HOH C 2 503 11 HOH HOH . N 5 HOH C 3 504 15 HOH HOH . N 5 HOH C 4 505 16 HOH HOH . N 5 HOH C 5 506 21 HOH HOH . N 5 HOH C 6 507 27 HOH HOH . N 5 HOH C 7 508 32 HOH HOH . N 5 HOH C 8 509 33 HOH HOH . N 5 HOH C 9 510 38 HOH HOH . N 5 HOH C 10 511 49 HOH HOH . N 5 HOH C 11 512 54 HOH HOH . N 5 HOH C 12 513 56 HOH HOH . N 5 HOH C 13 514 58 HOH HOH . N 5 HOH C 14 515 60 HOH HOH . N 5 HOH C 15 516 63 HOH HOH . N 5 HOH C 16 517 65 HOH HOH . N 5 HOH C 17 518 76 HOH HOH . N 5 HOH C 18 519 79 HOH HOH . N 5 HOH C 19 520 83 HOH HOH . N 5 HOH C 20 521 84 HOH HOH . N 5 HOH C 21 522 93 HOH HOH . N 5 HOH C 22 523 96 HOH HOH . N 5 HOH C 23 524 97 HOH HOH . N 5 HOH C 24 525 100 HOH HOH . N 5 HOH C 25 526 103 HOH HOH . N 5 HOH C 26 527 105 HOH HOH . N 5 HOH C 27 528 108 HOH HOH . N 5 HOH C 28 529 110 HOH HOH . N 5 HOH C 29 530 112 HOH HOH . N 5 HOH C 30 531 115 HOH HOH . N 5 HOH C 31 532 118 HOH HOH . N 5 HOH C 32 533 123 HOH HOH . N 5 HOH C 33 534 124 HOH HOH . N 5 HOH C 34 535 127 HOH HOH . N 5 HOH C 35 536 129 HOH HOH . O 5 HOH D 1 402 1 HOH HOH . O 5 HOH D 2 403 4 HOH HOH . O 5 HOH D 3 404 5 HOH HOH . O 5 HOH D 4 405 20 HOH HOH . O 5 HOH D 5 406 26 HOH HOH . O 5 HOH D 6 407 28 HOH HOH . O 5 HOH D 7 408 34 HOH HOH . O 5 HOH D 8 409 35 HOH HOH . O 5 HOH D 9 410 39 HOH HOH . O 5 HOH D 10 411 51 HOH HOH . O 5 HOH D 11 412 62 HOH HOH . O 5 HOH D 12 413 69 HOH HOH . O 5 HOH D 13 414 75 HOH HOH . O 5 HOH D 14 415 85 HOH HOH . O 5 HOH D 15 416 92 HOH HOH . O 5 HOH D 16 417 101 HOH HOH . O 5 HOH D 17 418 109 HOH HOH . O 5 HOH D 18 419 116 HOH HOH . O 5 HOH D 19 420 117 HOH HOH . O 5 HOH D 20 421 120 HOH HOH . O 5 HOH D 21 422 130 HOH HOH . O 5 HOH D 22 423 131 HOH HOH . O 5 HOH D 23 424 132 HOH HOH . O 5 HOH D 24 425 133 HOH HOH . O 5 HOH D 25 426 134 HOH HOH . O 5 HOH D 26 427 135 HOH HOH . O 5 HOH D 27 428 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 2 5.967 3.41 -27.048 1 43.73 ? PA NDP 401 C 1 HETATM 2 O O1A NDP . . . H 2 6.492 2.144 -27.623 1 43.21 ? O1A NDP 401 C 1 HETATM 3 O O2A NDP . . . H 2 5.885 4.627 -27.887 1 45.09 ? O2A NDP 401 C 1 HETATM 4 O O5B NDP . . . H 2 6.837 3.705 -25.722 1 47.22 ? O5B NDP 401 C 1 HETATM 5 C C5B NDP . . . H 2 6.281 4.497 -24.649 1 51.07 ? C5B NDP 401 C 1 HETATM 6 C C4B NDP . . . H 2 7.374 5.267 -23.903 1 51.9 ? C4B NDP 401 C 1 HETATM 7 O O4B NDP . . . H 2 8.527 5.547 -24.744 1 53.07 ? O4B NDP 401 C 1 HETATM 8 C C3B NDP . . . H 2 6.951 6.641 -23.418 1 53.89 ? C3B NDP 401 C 1 HETATM 9 O O3B NDP . . . H 2 6.418 6.562 -22.111 1 55.27 ? O3B NDP 401 C 1 HETATM 10 C C2B NDP . . . H 2 8.209 7.511 -23.549 1 54.93 ? C2B NDP 401 C 1 HETATM 11 O O2B NDP . . . H 2 8.589 8.113 -22.333 1 55.84 ? O2B NDP 401 C 1 HETATM 12 C C1B NDP . . . H 2 9.274 6.577 -24.09 1 54.62 ? C1B NDP 401 C 1 HETATM 13 N N9A NDP . . . H 2 10.215 7.195 -25.08 1 54.99 ? N9A NDP 401 C 1 HETATM 14 C C8A NDP . . . H 2 9.878 7.976 -26.187 1 54.1 ? C8A NDP 401 C 1 HETATM 15 N N7A NDP . . . H 2 10.919 8.392 -26.886 1 53.13 ? N7A NDP 401 C 1 HETATM 16 C C5A NDP . . . H 2 11.986 7.873 -26.228 1 53.74 ? C5A NDP 401 C 1 HETATM 17 C C6A NDP . . . H 2 13.409 7.952 -26.472 1 54.04 ? C6A NDP 401 C 1 HETATM 18 N N6A NDP . . . H 2 13.897 8.639 -27.517 1 54.04 ? N6A NDP 401 C 1 HETATM 19 N N1A NDP . . . H 2 14.257 7.293 -25.588 1 53.3 ? N1A NDP 401 C 1 HETATM 20 C C2A NDP . . . H 2 13.751 6.588 -24.513 1 54.37 ? C2A NDP 401 C 1 HETATM 21 N N3A NDP . . . H 2 12.414 6.449 -24.191 1 54.27 ? N3A NDP 401 C 1 HETATM 22 C C4A NDP . . . H 2 11.583 7.122 -25.096 1 54.19 ? C4A NDP 401 C 1 HETATM 23 O O3 NDP . . . H 2 4.513 3.079 -26.442 1 41.08 ? O3 NDP 401 C 1 HETATM 24 P PN NDP . . . H 2 3.028 3.644 -26.516 1 39.53 ? PN NDP 401 C 1 HETATM 25 O O1N NDP . . . H 2 2.917 4.803 -25.597 1 41.24 ? O1N NDP 401 C 1 HETATM 26 O O2N NDP . . . H 2 2.169 2.472 -26.194 1 39.93 ? O2N NDP 401 C 1 HETATM 27 O O5D NDP . . . H 2 2.732 4.084 -28.033 1 37.17 ? O5D NDP 401 C 1 HETATM 28 C C5D NDP . . . H 2 2.526 5.439 -28.493 1 33.56 ? C5D NDP 401 C 1 HETATM 29 C C4D NDP . . . H 2 1.296 5.592 -29.362 1 30.09 ? C4D NDP 401 C 1 HETATM 30 O O4D NDP . . . H 2 0.895 4.316 -29.913 1 29.36 ? O4D NDP 401 C 1 HETATM 31 C C3D NDP . . . H 2 0.024 6.078 -28.677 1 31.4 ? C3D NDP 401 C 1 HETATM 32 O O3D NDP . . . H 2 -0.007 7.458 -28.366 1 33.6 ? O3D NDP 401 C 1 HETATM 33 C C2D NDP . . . H 2 -1.064 5.57 -29.62 1 30.46 ? C2D NDP 401 C 1 HETATM 34 O O2D NDP . . . H 2 -1.314 6.522 -30.631 1 32.6 ? O2D NDP 401 C 1 HETATM 35 C C1D NDP . . . H 2 -0.491 4.261 -30.108 1 29.36 ? C1D NDP 401 C 1 HETATM 36 N N1N NDP . . . H 2 -1.022 3.083 -29.377 1 30.96 ? N1N NDP 401 C 1 HETATM 37 C C2N NDP . . . H 2 -1.97 2.329 -30.045 1 32.42 ? C2N NDP 401 C 1 HETATM 38 C C3N NDP . . . H 2 -2.534 1.194 -29.431 1 32.06 ? C3N NDP 401 C 1 HETATM 39 C C7N NDP . . . H 2 -3.558 0.346 -30.119 1 32.99 ? C7N NDP 401 C 1 HETATM 40 O O7N NDP . . . H 2 -4.012 -0.638 -29.536 1 34.07 ? O7N NDP 401 C 1 HETATM 41 N N7N NDP . . . H 2 -3.944 0.69 -31.368 1 34.62 ? N7N NDP 401 C 1 HETATM 42 C C4N NDP . . . H 2 -2.111 0.835 -28.103 1 33.04 ? C4N NDP 401 C 1 HETATM 43 C C5N NDP . . . H 2 -1.143 1.606 -27.418 1 34.58 ? C5N NDP 401 C 1 HETATM 44 C C6N NDP . . . H 2 -0.599 2.724 -28.053 1 34.3 ? C6N NDP 401 C 1 HETATM 45 P P2B NDP . . . H 2 8.36 9.683 -22.097 1 56.7 ? P2B NDP 401 C 1 HETATM 46 O O1X NDP . . . H 2 6.891 9.978 -22.315 1 55.32 ? O1X NDP 401 C 1 HETATM 47 O O2X NDP . . . H 2 8.89 9.848 -20.689 1 57.32 ? O2X NDP 401 C 1 HETATM 48 O O3X NDP . . . H 2 9.227 10.374 -23.107 1 57.52 ? O3X NDP 401 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #