data_2HE5 # _model_server_result.job_id EU5THsLFBa3dSxCdd9KH2Q _model_server_result.datetime_utc '2025-02-17 14:32:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2he5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 2HE5 # _exptl.entry_id 2HE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.6 _cell.angle_gamma 90 _cell.entry_id 2HE5 _cell.length_a 56.48 _cell.length_b 166.76 _cell.length_c 69.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,H,I,L,N 1 1 B,D,F,J,K,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 76 n n C1 O1 BME sing 77 n n C1 H11 BME sing 78 n n C1 H12 BME sing 79 n n C2 S2 BME sing 80 n n C2 H21 BME sing 81 n n C2 H22 BME sing 82 n n O1 HO1 BME sing 83 n n S2 HS2 BME sing 84 n n # _atom_sites.entry_id 2HE5 _atom_sites.fract_transf_matrix[1][1] 0.017705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002362 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 401 401 NDP NDP . F 2 NDP B 1 401 401 NDP NDP . G 3 ACT C 1 324 202 ACT ACT . H 2 NDP C 1 401 401 NDP NDP . I 4 BME C 1 501 501 BME SEO . J 3 ACT D 1 324 201 ACT ACT . K 2 NDP D 1 401 401 NDP NDP . L 5 HOH A 1 402 2 HOH HOH . L 5 HOH A 2 403 6 HOH HOH . L 5 HOH A 3 404 7 HOH HOH . L 5 HOH A 4 405 9 HOH HOH . L 5 HOH A 5 406 10 HOH HOH . L 5 HOH A 6 407 13 HOH HOH . L 5 HOH A 7 408 14 HOH HOH . L 5 HOH A 8 409 18 HOH HOH . L 5 HOH A 9 410 22 HOH HOH . L 5 HOH A 10 411 23 HOH HOH . L 5 HOH A 11 412 24 HOH HOH . L 5 HOH A 12 413 25 HOH HOH . L 5 HOH A 13 414 29 HOH HOH . L 5 HOH A 14 415 36 HOH HOH . L 5 HOH A 15 416 37 HOH HOH . L 5 HOH A 16 417 41 HOH HOH . L 5 HOH A 17 418 42 HOH HOH . L 5 HOH A 18 419 44 HOH HOH . L 5 HOH A 19 420 45 HOH HOH . L 5 HOH A 20 421 50 HOH HOH . L 5 HOH A 21 422 55 HOH HOH . L 5 HOH A 22 423 57 HOH HOH . L 5 HOH A 23 424 64 HOH HOH . L 5 HOH A 24 425 66 HOH HOH . L 5 HOH A 25 426 67 HOH HOH . L 5 HOH A 26 427 68 HOH HOH . L 5 HOH A 27 428 70 HOH HOH . L 5 HOH A 28 429 71 HOH HOH . L 5 HOH A 29 430 74 HOH HOH . L 5 HOH A 30 431 77 HOH HOH . L 5 HOH A 31 432 81 HOH HOH . L 5 HOH A 32 433 82 HOH HOH . L 5 HOH A 33 434 86 HOH HOH . L 5 HOH A 34 435 87 HOH HOH . L 5 HOH A 35 436 88 HOH HOH . L 5 HOH A 36 437 89 HOH HOH . L 5 HOH A 37 438 90 HOH HOH . L 5 HOH A 38 439 91 HOH HOH . L 5 HOH A 39 440 104 HOH HOH . L 5 HOH A 40 441 106 HOH HOH . L 5 HOH A 41 442 107 HOH HOH . L 5 HOH A 42 443 114 HOH HOH . L 5 HOH A 43 444 119 HOH HOH . L 5 HOH A 44 445 126 HOH HOH . L 5 HOH A 45 446 128 HOH HOH . L 5 HOH A 46 447 137 HOH HOH . M 5 HOH B 1 402 3 HOH HOH . M 5 HOH B 2 403 12 HOH HOH . M 5 HOH B 3 404 17 HOH HOH . M 5 HOH B 4 405 19 HOH HOH . M 5 HOH B 5 406 30 HOH HOH . M 5 HOH B 6 407 31 HOH HOH . M 5 HOH B 7 408 40 HOH HOH . M 5 HOH B 8 409 43 HOH HOH . M 5 HOH B 9 410 46 HOH HOH . M 5 HOH B 10 411 47 HOH HOH . M 5 HOH B 11 412 48 HOH HOH . M 5 HOH B 12 413 52 HOH HOH . M 5 HOH B 13 414 53 HOH HOH . M 5 HOH B 14 415 59 HOH HOH . M 5 HOH B 15 416 61 HOH HOH . M 5 HOH B 16 417 72 HOH HOH . M 5 HOH B 17 418 73 HOH HOH . M 5 HOH B 18 419 78 HOH HOH . M 5 HOH B 19 420 80 HOH HOH . M 5 HOH B 20 421 94 HOH HOH . M 5 HOH B 21 422 95 HOH HOH . M 5 HOH B 22 423 98 HOH HOH . M 5 HOH B 23 424 99 HOH HOH . M 5 HOH B 24 425 102 HOH HOH . M 5 HOH B 25 426 111 HOH HOH . M 5 HOH B 26 427 113 HOH HOH . M 5 HOH B 27 428 121 HOH HOH . M 5 HOH B 28 429 122 HOH HOH . M 5 HOH B 29 430 125 HOH HOH . N 5 HOH C 1 502 8 HOH HOH . N 5 HOH C 2 503 11 HOH HOH . N 5 HOH C 3 504 15 HOH HOH . N 5 HOH C 4 505 16 HOH HOH . N 5 HOH C 5 506 21 HOH HOH . N 5 HOH C 6 507 27 HOH HOH . N 5 HOH C 7 508 32 HOH HOH . N 5 HOH C 8 509 33 HOH HOH . N 5 HOH C 9 510 38 HOH HOH . N 5 HOH C 10 511 49 HOH HOH . N 5 HOH C 11 512 54 HOH HOH . N 5 HOH C 12 513 56 HOH HOH . N 5 HOH C 13 514 58 HOH HOH . N 5 HOH C 14 515 60 HOH HOH . N 5 HOH C 15 516 63 HOH HOH . N 5 HOH C 16 517 65 HOH HOH . N 5 HOH C 17 518 76 HOH HOH . N 5 HOH C 18 519 79 HOH HOH . N 5 HOH C 19 520 83 HOH HOH . N 5 HOH C 20 521 84 HOH HOH . N 5 HOH C 21 522 93 HOH HOH . N 5 HOH C 22 523 96 HOH HOH . N 5 HOH C 23 524 97 HOH HOH . N 5 HOH C 24 525 100 HOH HOH . N 5 HOH C 25 526 103 HOH HOH . N 5 HOH C 26 527 105 HOH HOH . N 5 HOH C 27 528 108 HOH HOH . N 5 HOH C 28 529 110 HOH HOH . N 5 HOH C 29 530 112 HOH HOH . N 5 HOH C 30 531 115 HOH HOH . N 5 HOH C 31 532 118 HOH HOH . N 5 HOH C 32 533 123 HOH HOH . N 5 HOH C 33 534 124 HOH HOH . N 5 HOH C 34 535 127 HOH HOH . N 5 HOH C 35 536 129 HOH HOH . O 5 HOH D 1 402 1 HOH HOH . O 5 HOH D 2 403 4 HOH HOH . O 5 HOH D 3 404 5 HOH HOH . O 5 HOH D 4 405 20 HOH HOH . O 5 HOH D 5 406 26 HOH HOH . O 5 HOH D 6 407 28 HOH HOH . O 5 HOH D 7 408 34 HOH HOH . O 5 HOH D 8 409 35 HOH HOH . O 5 HOH D 9 410 39 HOH HOH . O 5 HOH D 10 411 51 HOH HOH . O 5 HOH D 11 412 62 HOH HOH . O 5 HOH D 12 413 69 HOH HOH . O 5 HOH D 13 414 75 HOH HOH . O 5 HOH D 14 415 85 HOH HOH . O 5 HOH D 15 416 92 HOH HOH . O 5 HOH D 16 417 101 HOH HOH . O 5 HOH D 17 418 109 HOH HOH . O 5 HOH D 18 419 116 HOH HOH . O 5 HOH D 19 420 117 HOH HOH . O 5 HOH D 20 421 120 HOH HOH . O 5 HOH D 21 422 130 HOH HOH . O 5 HOH D 22 423 131 HOH HOH . O 5 HOH D 23 424 132 HOH HOH . O 5 HOH D 24 425 133 HOH HOH . O 5 HOH D 25 426 134 HOH HOH . O 5 HOH D 26 427 135 HOH HOH . O 5 HOH D 27 428 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . I 4 -18.663 -13.767 -40.096 0.8 60.83 ? C1 BME 501 C 1 HETATM 2 C C2 BME . . . I 4 -20.135 -13.393 -40.272 0.8 60.78 ? C2 BME 501 C 1 HETATM 3 O O1 BME . . . I 4 -18.38 -13.929 -38.704 0.8 61.31 ? O1 BME 501 C 1 HETATM 4 S S2 BME . . . I 4 -20.491 -13.177 -42.034 0.8 59.45 ? S2 BME 501 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #