data_2HEH # _model_server_result.job_id QqGzxd2CsYGl9BvpXk17wQ _model_server_result.datetime_utc '2025-07-15 18:28:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2heh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 2HEH # _exptl.entry_id 2HEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HEH _cell.length_a 79.72 _cell.length_b 79.72 _cell.length_c 154.885 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 A CYS 344 1_555 A SG CYS 354 A CYS 560 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.558 ? metalc ? metalc1 A OG1 THR 149 A THR 355 1_555 B MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc2 C O2B ADP . A ADP 601 1_555 B MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 B MG MG . A MG 602 1_555 N O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 B MG MG . A MG 602 1_555 N O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 B MG MG . A MG 602 1_555 N O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 B MG MG . A MG 602 1_555 N O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2HEH _atom_sites.fract_transf_matrix[1][1] 0.01254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 602 602 MG MG . C 3 ADP A 1 601 601 ADP ADP . D 4 UNX A 1 801 801 UNX UNX . E 4 UNX A 1 802 802 UNX UNX . F 4 UNX A 1 803 803 UNX UNX . G 4 UNX A 1 804 804 UNX UNX . H 4 UNX A 1 805 805 UNX UNX . I 4 UNX A 1 806 806 UNX UNX . J 4 UNX A 1 807 807 UNX UNX . K 4 UNX A 1 808 808 UNX UNX . L 4 UNX A 1 809 809 UNX UNX . M 4 UNX A 1 810 810 UNX UNX . N 5 HOH A 1 701 701 HOH HOH . N 5 HOH A 2 702 702 HOH HOH . N 5 HOH A 3 703 703 HOH HOH . N 5 HOH A 4 704 704 HOH HOH . N 5 HOH A 5 705 705 HOH HOH . N 5 HOH A 6 706 706 HOH HOH . N 5 HOH A 7 707 707 HOH HOH . N 5 HOH A 8 708 708 HOH HOH . N 5 HOH A 9 709 709 HOH HOH . N 5 HOH A 10 710 710 HOH HOH . N 5 HOH A 11 711 711 HOH HOH . N 5 HOH A 12 712 712 HOH HOH . N 5 HOH A 13 713 713 HOH HOH . N 5 HOH A 14 714 714 HOH HOH . N 5 HOH A 15 715 715 HOH HOH . N 5 HOH A 16 716 716 HOH HOH . N 5 HOH A 17 717 717 HOH HOH . N 5 HOH A 18 718 718 HOH HOH . N 5 HOH A 19 719 719 HOH HOH . N 5 HOH A 20 720 720 HOH HOH . N 5 HOH A 21 721 721 HOH HOH . N 5 HOH A 22 722 722 HOH HOH . N 5 HOH A 23 723 723 HOH HOH . N 5 HOH A 24 724 724 HOH HOH . N 5 HOH A 25 725 725 HOH HOH . N 5 HOH A 26 726 726 HOH HOH . N 5 HOH A 27 727 727 HOH HOH . N 5 HOH A 28 728 728 HOH HOH . N 5 HOH A 29 729 729 HOH HOH . N 5 HOH A 30 730 730 HOH HOH . N 5 HOH A 31 731 731 HOH HOH . N 5 HOH A 32 732 732 HOH HOH . N 5 HOH A 33 733 733 HOH HOH . N 5 HOH A 34 734 734 HOH HOH . N 5 HOH A 35 735 735 HOH HOH . N 5 HOH A 36 736 736 HOH HOH . N 5 HOH A 37 737 737 HOH HOH . N 5 HOH A 38 738 738 HOH HOH . N 5 HOH A 39 739 739 HOH HOH . N 5 HOH A 40 740 740 HOH HOH . N 5 HOH A 41 741 741 HOH HOH . N 5 HOH A 42 742 742 HOH HOH . N 5 HOH A 43 743 743 HOH HOH . N 5 HOH A 44 744 744 HOH HOH . N 5 HOH A 45 745 745 HOH HOH . N 5 HOH A 46 746 746 HOH HOH . N 5 HOH A 47 747 747 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 14.138 8.007 25.693 1 28.3 ? PB ADP 601 A 1 HETATM 2 O O1B ADP . . . C 3 13.57 8.599 24.405 1 28.68 ? O1B ADP 601 A 1 HETATM 3 O O2B ADP . . . C 3 14.153 8.957 26.819 1 23.11 ? O2B ADP 601 A 1 HETATM 4 O O3B ADP . . . C 3 13.544 6.654 25.959 1 28.62 ? O3B ADP 601 A 1 HETATM 5 P PA ADP . . . C 3 17.025 8.035 26.188 1 30.36 ? PA ADP 601 A 1 HETATM 6 O O1A ADP . . . C 3 16.977 7.293 27.478 1 34.76 ? O1A ADP 601 A 1 HETATM 7 O O2A ADP . . . C 3 17.339 9.485 26.27 1 28.7 ? O2A ADP 601 A 1 HETATM 8 O O3A ADP . . . C 3 15.7 7.702 25.356 1 29.92 ? O3A ADP 601 A 1 HETATM 9 O O5' ADP . . . C 3 18.097 7.367 25.206 1 30.28 ? O5' ADP 601 A 1 HETATM 10 C C5' ADP . . . C 3 18.34 5.955 25.099 1 33.58 ? C5' ADP 601 A 1 HETATM 11 C C4' ADP . . . C 3 19.845 5.651 25.101 1 34.62 ? C4' ADP 601 A 1 HETATM 12 O O4' ADP . . . C 3 20.516 6.182 23.928 1 34.55 ? O4' ADP 601 A 1 HETATM 13 C C3' ADP . . . C 3 20.523 6.289 26.293 1 38.2 ? C3' ADP 601 A 1 HETATM 14 O O3' ADP . . . C 3 21.588 5.46 26.808 1 41.55 ? O3' ADP 601 A 1 HETATM 15 C C2' ADP . . . C 3 21.017 7.59 25.71 1 34.23 ? C2' ADP 601 A 1 HETATM 16 O O2' ADP . . . C 3 22.015 8.254 26.47 1 36 ? O2' ADP 601 A 1 HETATM 17 C C1' ADP . . . C 3 21.422 7.209 24.31 1 32.33 ? C1' ADP 601 A 1 HETATM 18 N N9 ADP . . . C 3 21.27 8.362 23.397 1 32.22 ? N9 ADP 601 A 1 HETATM 19 C C8 ADP . . . C 3 20.104 8.973 23.091 1 31.82 ? C8 ADP 601 A 1 HETATM 20 N N7 ADP . . . C 3 20.33 10.001 22.237 1 31.76 ? N7 ADP 601 A 1 HETATM 21 C C5 ADP . . . C 3 21.664 10.035 21.967 1 30.13 ? C5 ADP 601 A 1 HETATM 22 C C6 ADP . . . C 3 22.576 10.874 21.152 1 32.38 ? C6 ADP 601 A 1 HETATM 23 N N6 ADP . . . C 3 22.115 11.88 20.424 1 31.38 ? N6 ADP 601 A 1 HETATM 24 N N1 ADP . . . C 3 23.913 10.621 21.172 1 34.35 ? N1 ADP 601 A 1 HETATM 25 C C2 ADP . . . C 3 24.41 9.59 21.924 1 34.11 ? C2 ADP 601 A 1 HETATM 26 N N3 ADP . . . C 3 23.606 8.772 22.673 1 33.51 ? N3 ADP 601 A 1 HETATM 27 C C4 ADP . . . C 3 22.266 8.961 22.737 1 31.68 ? C4 ADP 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 27 #