data_2HEI # _model_server_result.job_id lA0kS-qPPqwxcrY87X_n4A _model_server_result.datetime_utc '2024-11-23 07:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 2HEI # _exptl.entry_id 2HEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HEI _cell.length_a 41.302 _cell.length_b 78.37 _cell.length_c 95.501 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 99 n n PB O2B GDP sing 100 n n PB O3B GDP sing 101 n n PB O3A GDP sing 102 n n O2B HOB2 GDP sing 103 n n O3B HOB3 GDP sing 104 n n O3A PA GDP sing 105 n n PA O1A GDP doub 106 n n PA O2A GDP sing 107 n n PA O5' GDP sing 108 n n O2A HOA2 GDP sing 109 n n O5' C5' GDP sing 110 n n C5' C4' GDP sing 111 n n C5' H5' GDP sing 112 n n C5' "H5''" GDP sing 113 n n C4' O4' GDP sing 114 n n C4' C3' GDP sing 115 n n C4' H4' GDP sing 116 n n O4' C1' GDP sing 117 n n C3' O3' GDP sing 118 n n C3' C2' GDP sing 119 n n C3' H3' GDP sing 120 n n O3' HO3' GDP sing 121 n n C2' O2' GDP sing 122 n n C2' C1' GDP sing 123 n n C2' H2' GDP sing 124 n n O2' HO2' GDP sing 125 n n C1' N9 GDP sing 126 n n C1' H1' GDP sing 127 n n N9 C8 GDP sing 128 n y N9 C4 GDP sing 129 n y C8 N7 GDP doub 130 n y C8 H8 GDP sing 131 n n N7 C5 GDP sing 132 n y C5 C6 GDP sing 133 n n C5 C4 GDP doub 134 n y C6 O6 GDP doub 135 n n C6 N1 GDP sing 136 n n N1 C2 GDP sing 137 n n N1 HN1 GDP sing 138 n n C2 N2 GDP sing 139 n n C2 N3 GDP doub 140 n n N2 HN21 GDP sing 141 n n N2 HN22 GDP sing 142 n n N3 C4 GDP sing 143 n n # _atom_sites.entry_id 2HEI _atom_sites.fract_transf_matrix[1][1] 0.024212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 201 GDP GDP . D 3 D1D A 1 202 202 D1D D1D . E 2 GDP B 1 301 301 GDP GDP . F 3 D1D B 1 302 302 D1D D1D . G 4 HOH A 1 203 2 HOH HOH . G 4 HOH A 2 204 4 HOH HOH . G 4 HOH A 3 205 6 HOH HOH . G 4 HOH A 4 206 7 HOH HOH . G 4 HOH A 5 207 9 HOH HOH . G 4 HOH A 6 208 10 HOH HOH . G 4 HOH A 7 209 11 HOH HOH . G 4 HOH A 8 210 12 HOH HOH . G 4 HOH A 9 211 14 HOH HOH . G 4 HOH A 10 212 17 HOH HOH . G 4 HOH A 11 213 18 HOH HOH . G 4 HOH A 12 214 20 HOH HOH . G 4 HOH A 13 215 22 HOH HOH . G 4 HOH A 14 216 23 HOH HOH . G 4 HOH A 15 217 24 HOH HOH . G 4 HOH A 16 218 26 HOH HOH . G 4 HOH A 17 219 29 HOH HOH . G 4 HOH A 18 220 34 HOH HOH . G 4 HOH A 19 221 36 HOH HOH . G 4 HOH A 20 222 39 HOH HOH . G 4 HOH A 21 223 42 HOH HOH . G 4 HOH A 22 224 43 HOH HOH . G 4 HOH A 23 225 44 HOH HOH . G 4 HOH A 24 226 49 HOH HOH . G 4 HOH A 25 227 51 HOH HOH . G 4 HOH A 26 228 52 HOH HOH . G 4 HOH A 27 229 53 HOH HOH . G 4 HOH A 28 230 54 HOH HOH . G 4 HOH A 29 231 61 HOH HOH . G 4 HOH A 30 232 62 HOH HOH . G 4 HOH A 31 233 63 HOH HOH . G 4 HOH A 32 234 64 HOH HOH . G 4 HOH A 33 235 65 HOH HOH . G 4 HOH A 34 236 67 HOH HOH . G 4 HOH A 35 237 68 HOH HOH . G 4 HOH A 36 238 69 HOH HOH . G 4 HOH A 37 239 70 HOH HOH . G 4 HOH A 38 240 72 HOH HOH . G 4 HOH A 39 241 77 HOH HOH . G 4 HOH A 40 242 78 HOH HOH . G 4 HOH A 41 243 82 HOH HOH . G 4 HOH A 42 244 83 HOH HOH . G 4 HOH A 43 245 85 HOH HOH . G 4 HOH A 44 246 88 HOH HOH . G 4 HOH A 45 247 89 HOH HOH . G 4 HOH A 46 248 90 HOH HOH . G 4 HOH A 47 249 91 HOH HOH . G 4 HOH A 48 250 92 HOH HOH . G 4 HOH A 49 251 93 HOH HOH . G 4 HOH A 50 252 94 HOH HOH . G 4 HOH A 51 253 95 HOH HOH . G 4 HOH A 52 254 96 HOH HOH . G 4 HOH A 53 255 97 HOH HOH . G 4 HOH A 54 256 98 HOH HOH . G 4 HOH A 55 257 99 HOH HOH . G 4 HOH A 56 258 100 HOH HOH . G 4 HOH A 57 259 101 HOH HOH . G 4 HOH A 58 260 104 HOH HOH . G 4 HOH A 59 261 113 HOH HOH . G 4 HOH A 60 262 114 HOH HOH . G 4 HOH A 61 263 115 HOH HOH . G 4 HOH A 62 264 117 HOH HOH . G 4 HOH A 63 265 118 HOH HOH . G 4 HOH A 64 266 122 HOH HOH . H 4 HOH B 1 303 1 HOH HOH . H 4 HOH B 2 304 3 HOH HOH . H 4 HOH B 3 305 5 HOH HOH . H 4 HOH B 4 306 8 HOH HOH . H 4 HOH B 5 307 13 HOH HOH . H 4 HOH B 6 308 15 HOH HOH . H 4 HOH B 7 309 16 HOH HOH . H 4 HOH B 8 310 19 HOH HOH . H 4 HOH B 9 311 21 HOH HOH . H 4 HOH B 10 312 25 HOH HOH . H 4 HOH B 11 313 27 HOH HOH . H 4 HOH B 12 314 28 HOH HOH . H 4 HOH B 13 315 30 HOH HOH . H 4 HOH B 14 316 31 HOH HOH . H 4 HOH B 15 317 32 HOH HOH . H 4 HOH B 16 318 33 HOH HOH . H 4 HOH B 17 319 35 HOH HOH . H 4 HOH B 18 320 37 HOH HOH . H 4 HOH B 19 321 38 HOH HOH . H 4 HOH B 20 322 40 HOH HOH . H 4 HOH B 21 323 41 HOH HOH . H 4 HOH B 22 324 45 HOH HOH . H 4 HOH B 23 325 46 HOH HOH . H 4 HOH B 24 326 47 HOH HOH . H 4 HOH B 25 327 48 HOH HOH . H 4 HOH B 26 328 50 HOH HOH . H 4 HOH B 27 329 55 HOH HOH . H 4 HOH B 28 330 56 HOH HOH . H 4 HOH B 29 331 57 HOH HOH . H 4 HOH B 30 332 58 HOH HOH . H 4 HOH B 31 333 59 HOH HOH . H 4 HOH B 32 334 60 HOH HOH . H 4 HOH B 33 335 66 HOH HOH . H 4 HOH B 34 336 71 HOH HOH . H 4 HOH B 35 337 73 HOH HOH . H 4 HOH B 36 338 74 HOH HOH . H 4 HOH B 37 339 75 HOH HOH . H 4 HOH B 38 340 76 HOH HOH . H 4 HOH B 39 341 79 HOH HOH . H 4 HOH B 40 342 80 HOH HOH . H 4 HOH B 41 343 81 HOH HOH . H 4 HOH B 42 344 84 HOH HOH . H 4 HOH B 43 345 86 HOH HOH . H 4 HOH B 44 346 87 HOH HOH . H 4 HOH B 45 347 102 HOH HOH . H 4 HOH B 46 348 103 HOH HOH . H 4 HOH B 47 349 105 HOH HOH . H 4 HOH B 48 350 106 HOH HOH . H 4 HOH B 49 351 107 HOH HOH . H 4 HOH B 50 352 108 HOH HOH . H 4 HOH B 51 353 109 HOH HOH . H 4 HOH B 52 354 110 HOH HOH . H 4 HOH B 53 355 111 HOH HOH . H 4 HOH B 54 356 112 HOH HOH . H 4 HOH B 55 357 116 HOH HOH . H 4 HOH B 56 358 119 HOH HOH . H 4 HOH B 57 359 120 HOH HOH . H 4 HOH B 58 360 121 HOH HOH . H 4 HOH B 59 361 123 HOH HOH . H 4 HOH B 60 362 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . C 2 14.663 28.801 6.48 1 14.9 ? PB GDP 201 A 1 HETATM 2 O O1B GDP . . . C 2 13.78 28.595 5.242 1 16.75 ? O1B GDP 201 A 1 HETATM 3 O O2B GDP . . . C 2 16 28.16 6.224 1 14.45 ? O2B GDP 201 A 1 HETATM 4 O O3B GDP . . . C 2 14.807 30.277 6.828 1 15.58 ? O3B GDP 201 A 1 HETATM 5 O O3A GDP . . . C 2 14.055 27.933 7.677 1 14.08 ? O3A GDP 201 A 1 HETATM 6 P PA GDP . . . C 2 13.075 28.412 8.895 1 14.77 ? PA GDP 201 A 1 HETATM 7 O O1A GDP . . . C 2 13.888 29.153 9.942 1 14.34 ? O1A GDP 201 A 1 HETATM 8 O O2A GDP . . . C 2 11.904 29.182 8.357 1 15.78 ? O2A GDP 201 A 1 HETATM 9 O O5' GDP . . . C 2 12.642 27.037 9.573 1 14.14 ? O5' GDP 201 A 1 HETATM 10 C C5' GDP . . . C 2 11.838 26.116 8.865 1 17.17 ? C5' GDP 201 A 1 HETATM 11 C C4' GDP . . . C 2 10.956 25.342 9.828 1 15.68 ? C4' GDP 201 A 1 HETATM 12 O O4' GDP . . . C 2 11.81 24.63 10.737 1 16.15 ? O4' GDP 201 A 1 HETATM 13 C C3' GDP . . . C 2 10.075 26.201 10.697 1 16.78 ? C3' GDP 201 A 1 HETATM 14 O O3' GDP . . . C 2 8.882 25.481 11.056 1 19.61 ? O3' GDP 201 A 1 HETATM 15 C C2' GDP . . . C 2 10.916 26.369 11.932 1 14.72 ? C2' GDP 201 A 1 HETATM 16 O O2' GDP . . . C 2 10.234 26.684 13.15 1 19.74 ? O2' GDP 201 A 1 HETATM 17 C C1' GDP . . . C 2 11.587 25.02 12.057 1 15.04 ? C1' GDP 201 A 1 HETATM 18 N N9 GDP . . . C 2 12.856 25.059 12.736 1 14.96 ? N9 GDP 201 A 1 HETATM 19 C C8 GDP . . . C 2 13.844 25.933 12.544 1 13.26 ? C8 GDP 201 A 1 HETATM 20 N N7 GDP . . . C 2 14.881 25.641 13.325 1 12.3 ? N7 GDP 201 A 1 HETATM 21 C C5 GDP . . . C 2 14.556 24.554 14.011 1 13.84 ? C5 GDP 201 A 1 HETATM 22 C C6 GDP . . . C 2 15.19 23.728 15.016 1 12.73 ? C6 GDP 201 A 1 HETATM 23 O O6 GDP . . . C 2 16.327 23.963 15.394 1 12.9 ? O6 GDP 201 A 1 HETATM 24 N N1 GDP . . . C 2 14.567 22.658 15.46 1 14.37 ? N1 GDP 201 A 1 HETATM 25 C C2 GDP . . . C 2 13.31 22.341 15.06 1 14.74 ? C2 GDP 201 A 1 HETATM 26 N N2 GDP . . . C 2 12.735 21.249 15.586 1 14.2 ? N2 GDP 201 A 1 HETATM 27 N N3 GDP . . . C 2 12.626 23.078 14.146 1 13.39 ? N3 GDP 201 A 1 HETATM 28 C C4 GDP . . . C 2 13.234 24.181 13.613 1 13.06 ? C4 GDP 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #