data_2HEI
#
_model_server_result.job_id            Y40d7bdaGt3ltJ9W-VLYeA 
_model_server_result.datetime_utc      '2024-12-03 17:30:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2hei 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    2HEI 
#
_exptl.entry_id    2HEI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2HEI 
_cell.length_a            41.302 
_cell.length_b            78.37 
_cell.length_c            95.501 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2HEI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H15 N5 O11 P2' 
_chem_comp.formula_weight    443.201 
_chem_comp.id                GDP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B GDP doub 99 n n 
PB O2B GDP sing 100 n n 
PB O3B GDP sing 101 n n 
PB O3A GDP sing 102 n n 
O2B HOB2 GDP sing 103 n n 
O3B HOB3 GDP sing 104 n n 
O3A PA GDP sing 105 n n 
PA O1A GDP doub 106 n n 
PA O2A GDP sing 107 n n 
PA O5' GDP sing 108 n n 
O2A HOA2 GDP sing 109 n n 
O5' C5' GDP sing 110 n n 
C5' C4' GDP sing 111 n n 
C5' H5' GDP sing 112 n n 
C5' "H5''" GDP sing 113 n n 
C4' O4' GDP sing 114 n n 
C4' C3' GDP sing 115 n n 
C4' H4' GDP sing 116 n n 
O4' C1' GDP sing 117 n n 
C3' O3' GDP sing 118 n n 
C3' C2' GDP sing 119 n n 
C3' H3' GDP sing 120 n n 
O3' HO3' GDP sing 121 n n 
C2' O2' GDP sing 122 n n 
C2' C1' GDP sing 123 n n 
C2' H2' GDP sing 124 n n 
O2' HO2' GDP sing 125 n n 
C1' N9 GDP sing 126 n n 
C1' H1' GDP sing 127 n n 
N9 C8 GDP sing 128 n y 
N9 C4 GDP sing 129 n y 
C8 N7 GDP doub 130 n y 
C8 H8 GDP sing 131 n n 
N7 C5 GDP sing 132 n y 
C5 C6 GDP sing 133 n n 
C5 C4 GDP doub 134 n y 
C6 O6 GDP doub 135 n n 
C6 N1 GDP sing 136 n n 
N1 C2 GDP sing 137 n n 
N1 HN1 GDP sing 138 n n 
C2 N2 GDP sing 139 n n 
C2 N3 GDP doub 140 n n 
N2 HN21 GDP sing 141 n n 
N2 HN22 GDP sing 142 n n 
N3 C4 GDP sing 143 n n 
#
_atom_sites.entry_id                     2HEI 
_atom_sites.fract_transf_matrix[1][1]    0.024212 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDP A 1 201 201 GDP GDP . 
D 3 D1D A 1 202 202 D1D D1D . 
E 2 GDP B 1 301 301 GDP GDP . 
F 3 D1D B 1 302 302 D1D D1D . 
G 4 HOH A 1 203 2 HOH HOH . 
G 4 HOH A 2 204 4 HOH HOH . 
G 4 HOH A 3 205 6 HOH HOH . 
G 4 HOH A 4 206 7 HOH HOH . 
G 4 HOH A 5 207 9 HOH HOH . 
G 4 HOH A 6 208 10 HOH HOH . 
G 4 HOH A 7 209 11 HOH HOH . 
G 4 HOH A 8 210 12 HOH HOH . 
G 4 HOH A 9 211 14 HOH HOH . 
G 4 HOH A 10 212 17 HOH HOH . 
G 4 HOH A 11 213 18 HOH HOH . 
G 4 HOH A 12 214 20 HOH HOH . 
G 4 HOH A 13 215 22 HOH HOH . 
G 4 HOH A 14 216 23 HOH HOH . 
G 4 HOH A 15 217 24 HOH HOH . 
G 4 HOH A 16 218 26 HOH HOH . 
G 4 HOH A 17 219 29 HOH HOH . 
G 4 HOH A 18 220 34 HOH HOH . 
G 4 HOH A 19 221 36 HOH HOH . 
G 4 HOH A 20 222 39 HOH HOH . 
G 4 HOH A 21 223 42 HOH HOH . 
G 4 HOH A 22 224 43 HOH HOH . 
G 4 HOH A 23 225 44 HOH HOH . 
G 4 HOH A 24 226 49 HOH HOH . 
G 4 HOH A 25 227 51 HOH HOH . 
G 4 HOH A 26 228 52 HOH HOH . 
G 4 HOH A 27 229 53 HOH HOH . 
G 4 HOH A 28 230 54 HOH HOH . 
G 4 HOH A 29 231 61 HOH HOH . 
G 4 HOH A 30 232 62 HOH HOH . 
G 4 HOH A 31 233 63 HOH HOH . 
G 4 HOH A 32 234 64 HOH HOH . 
G 4 HOH A 33 235 65 HOH HOH . 
G 4 HOH A 34 236 67 HOH HOH . 
G 4 HOH A 35 237 68 HOH HOH . 
G 4 HOH A 36 238 69 HOH HOH . 
G 4 HOH A 37 239 70 HOH HOH . 
G 4 HOH A 38 240 72 HOH HOH . 
G 4 HOH A 39 241 77 HOH HOH . 
G 4 HOH A 40 242 78 HOH HOH . 
G 4 HOH A 41 243 82 HOH HOH . 
G 4 HOH A 42 244 83 HOH HOH . 
G 4 HOH A 43 245 85 HOH HOH . 
G 4 HOH A 44 246 88 HOH HOH . 
G 4 HOH A 45 247 89 HOH HOH . 
G 4 HOH A 46 248 90 HOH HOH . 
G 4 HOH A 47 249 91 HOH HOH . 
G 4 HOH A 48 250 92 HOH HOH . 
G 4 HOH A 49 251 93 HOH HOH . 
G 4 HOH A 50 252 94 HOH HOH . 
G 4 HOH A 51 253 95 HOH HOH . 
G 4 HOH A 52 254 96 HOH HOH . 
G 4 HOH A 53 255 97 HOH HOH . 
G 4 HOH A 54 256 98 HOH HOH . 
G 4 HOH A 55 257 99 HOH HOH . 
G 4 HOH A 56 258 100 HOH HOH . 
G 4 HOH A 57 259 101 HOH HOH . 
G 4 HOH A 58 260 104 HOH HOH . 
G 4 HOH A 59 261 113 HOH HOH . 
G 4 HOH A 60 262 114 HOH HOH . 
G 4 HOH A 61 263 115 HOH HOH . 
G 4 HOH A 62 264 117 HOH HOH . 
G 4 HOH A 63 265 118 HOH HOH . 
G 4 HOH A 64 266 122 HOH HOH . 
H 4 HOH B 1 303 1 HOH HOH . 
H 4 HOH B 2 304 3 HOH HOH . 
H 4 HOH B 3 305 5 HOH HOH . 
H 4 HOH B 4 306 8 HOH HOH . 
H 4 HOH B 5 307 13 HOH HOH . 
H 4 HOH B 6 308 15 HOH HOH . 
H 4 HOH B 7 309 16 HOH HOH . 
H 4 HOH B 8 310 19 HOH HOH . 
H 4 HOH B 9 311 21 HOH HOH . 
H 4 HOH B 10 312 25 HOH HOH . 
H 4 HOH B 11 313 27 HOH HOH . 
H 4 HOH B 12 314 28 HOH HOH . 
H 4 HOH B 13 315 30 HOH HOH . 
H 4 HOH B 14 316 31 HOH HOH . 
H 4 HOH B 15 317 32 HOH HOH . 
H 4 HOH B 16 318 33 HOH HOH . 
H 4 HOH B 17 319 35 HOH HOH . 
H 4 HOH B 18 320 37 HOH HOH . 
H 4 HOH B 19 321 38 HOH HOH . 
H 4 HOH B 20 322 40 HOH HOH . 
H 4 HOH B 21 323 41 HOH HOH . 
H 4 HOH B 22 324 45 HOH HOH . 
H 4 HOH B 23 325 46 HOH HOH . 
H 4 HOH B 24 326 47 HOH HOH . 
H 4 HOH B 25 327 48 HOH HOH . 
H 4 HOH B 26 328 50 HOH HOH . 
H 4 HOH B 27 329 55 HOH HOH . 
H 4 HOH B 28 330 56 HOH HOH . 
H 4 HOH B 29 331 57 HOH HOH . 
H 4 HOH B 30 332 58 HOH HOH . 
H 4 HOH B 31 333 59 HOH HOH . 
H 4 HOH B 32 334 60 HOH HOH . 
H 4 HOH B 33 335 66 HOH HOH . 
H 4 HOH B 34 336 71 HOH HOH . 
H 4 HOH B 35 337 73 HOH HOH . 
H 4 HOH B 36 338 74 HOH HOH . 
H 4 HOH B 37 339 75 HOH HOH . 
H 4 HOH B 38 340 76 HOH HOH . 
H 4 HOH B 39 341 79 HOH HOH . 
H 4 HOH B 40 342 80 HOH HOH . 
H 4 HOH B 41 343 81 HOH HOH . 
H 4 HOH B 42 344 84 HOH HOH . 
H 4 HOH B 43 345 86 HOH HOH . 
H 4 HOH B 44 346 87 HOH HOH . 
H 4 HOH B 45 347 102 HOH HOH . 
H 4 HOH B 46 348 103 HOH HOH . 
H 4 HOH B 47 349 105 HOH HOH . 
H 4 HOH B 48 350 106 HOH HOH . 
H 4 HOH B 49 351 107 HOH HOH . 
H 4 HOH B 50 352 108 HOH HOH . 
H 4 HOH B 51 353 109 HOH HOH . 
H 4 HOH B 52 354 110 HOH HOH . 
H 4 HOH B 53 355 111 HOH HOH . 
H 4 HOH B 54 356 112 HOH HOH . 
H 4 HOH B 55 357 116 HOH HOH . 
H 4 HOH B 56 358 119 HOH HOH . 
H 4 HOH B 57 359 120 HOH HOH . 
H 4 HOH B 58 360 121 HOH HOH . 
H 4 HOH B 59 361 123 HOH HOH . 
H 4 HOH B 60 362 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB GDP . . . E 2 -5.993 49.609 -6.529 1 12.35 ? PB GDP 301 B 1 
HETATM 2 O O1B GDP . . . E 2 -6.919 49.821 -5.314 1 14.87 ? O1B GDP 301 B 1 
HETATM 3 O O2B GDP . . . E 2 -4.682 50.262 -6.39 1 12.93 ? O2B GDP 301 B 1 
HETATM 4 O O3B GDP . . . E 2 -5.969 48.171 -6.902 1 14.6 ? O3B GDP 301 B 1 
HETATM 5 O O3A GDP . . . E 2 -6.668 50.452 -7.709 1 12.83 ? O3A GDP 301 B 1 
HETATM 6 P PA GDP . . . E 2 -7.656 49.955 -8.912 1 13.87 ? PA GDP 301 B 1 
HETATM 7 O O1A GDP . . . E 2 -6.812 49.291 -9.969 1 13.44 ? O1A GDP 301 B 1 
HETATM 8 O O2A GDP . . . E 2 -8.843 49.183 -8.4 1 15.07 ? O2A GDP 301 B 1 
HETATM 9 O O5' GDP . . . E 2 -8.047 51.304 -9.565 1 13.46 ? O5' GDP 301 B 1 
HETATM 10 C C5' GDP . . . E 2 -8.833 52.282 -8.91 1 14.76 ? C5' GDP 301 B 1 
HETATM 11 C C4' GDP . . . E 2 -9.695 53.083 -9.866 1 13.77 ? C4' GDP 301 B 1 
HETATM 12 O O4' GDP . . . E 2 -8.883 53.812 -10.774 1 15.31 ? O4' GDP 301 B 1 
HETATM 13 C C3' GDP . . . E 2 -10.583 52.218 -10.713 1 14.68 ? C3' GDP 301 B 1 
HETATM 14 O O3' GDP . . . E 2 -11.786 52.942 -11.062 1 16.6 ? O3' GDP 301 B 1 
HETATM 15 C C2' GDP . . . E 2 -9.779 52.036 -11.963 1 12.98 ? C2' GDP 301 B 1 
HETATM 16 O O2' GDP . . . E 2 -10.578 51.729 -13.113 1 15.06 ? O2' GDP 301 B 1 
HETATM 17 C C1' GDP . . . E 2 -9.085 53.385 -12.098 1 14.28 ? C1' GDP 301 B 1 
HETATM 18 N N9 GDP . . . E 2 -7.82 53.339 -12.787 1 13.53 ? N9 GDP 301 B 1 
HETATM 19 C C8 GDP . . . E 2 -6.799 52.473 -12.592 1 11.76 ? C8 GDP 301 B 1 
HETATM 20 N N7 GDP . . . E 2 -5.758 52.757 -13.404 1 12.81 ? N7 GDP 301 B 1 
HETATM 21 C C5 GDP . . . E 2 -6.103 53.839 -14.134 1 13.9 ? C5 GDP 301 B 1 
HETATM 22 C C6 GDP . . . E 2 -5.477 54.68 -15.147 1 14.15 ? C6 GDP 301 B 1 
HETATM 23 O O6 GDP . . . E 2 -4.342 54.442 -15.607 1 12.12 ? O6 GDP 301 B 1 
HETATM 24 N N1 GDP . . . E 2 -6.167 55.712 -15.656 1 12.11 ? N1 GDP 301 B 1 
HETATM 25 C C2 GDP . . . E 2 -7.4 56.036 -15.238 1 14.98 ? C2 GDP 301 B 1 
HETATM 26 N N2 GDP . . . E 2 -7.977 57.13 -15.806 1 14.07 ? N2 GDP 301 B 1 
HETATM 27 N N3 GDP . . . E 2 -8.058 55.306 -14.268 1 12.03 ? N3 GDP 301 B 1 
HETATM 28 C C4 GDP . . . E 2 -7.453 54.213 -13.718 1 14.63 ? C4 GDP 301 B 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#