data_2HF8 # _model_server_result.job_id FyoCx-uUsgc-yP2dlEWCdg _model_server_result.datetime_utc '2024-11-05 00:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2hf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2HF8 # _exptl.entry_id 2HF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2HF8 _cell.length_a 43.12 _cell.length_b 68.13 _cell.length_c 155.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 43 A PHE 38 1_555 A N MSE 44 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 44 A MSE 39 1_555 A N GLY 45 A GLY 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ARG 83 A ARG 78 1_555 A N MSE 84 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 84 A MSE 79 1_555 A N GLU 85 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C ILE 162 A ILE 157 1_555 A N MSE 163 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 163 A MSE 158 1_555 A N LYS 164 A LYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C LYS 186 A LYS 181 1_555 A N MSE 187 A MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 187 A MSE 182 1_555 A N GLU 188 A GLU 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C THR 207 A THR 202 1_555 A N MSE 208 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 208 A MSE 203 1_555 A N GLU 209 A GLU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 F O3G GSP . A GSP 300 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc2 C MG MG . A MG 301 1_555 A OG1 THR 52 A THR 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 C MG MG . A MG 301 1_555 A OD2 ASP 80 A ASP 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 C MG MG . A MG 301 1_555 K O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 C MG MG . A MG 301 1_555 A OE2 GLU 125 A GLU 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc6 C MG MG . A MG 301 1_555 F O2B GSP . A GSP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc7 D ZN ZN . A ZN 401 1_555 A SG CYS 100 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc8 D ZN ZN . A ZN 401 1_555 A SG CYS 132 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc9 D ZN ZN . A ZN 401 1_555 B SG CYS 100 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc10 E ZN ZN . A ZN 403 1_555 A NE2 HIS 105 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc11 E ZN ZN . A ZN 403 1_555 A NE2 HIS 109 A HIS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale11 B C PHE 43 B PHE 38 1_555 B N MSE 44 B MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 B C MSE 44 B MSE 39 1_555 B N GLY 45 B GLY 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C ARG 83 B ARG 78 1_555 B N MSE 84 B MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 B C MSE 84 B MSE 79 1_555 B N GLU 85 B GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 B C ILE 162 B ILE 157 1_555 B N MSE 163 B MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C MSE 163 B MSE 158 1_555 B N LYS 164 B LYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 B C LYS 186 B LYS 181 1_555 B N MSE 187 B MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 B C MSE 187 B MSE 182 1_555 B N GLU 188 B GLU 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C THR 207 B THR 202 1_555 B N MSE 208 B MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale20 B C MSE 208 B MSE 203 1_555 B N GLU 209 B GLU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc12 J O3G GSP . B GSP 300 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc13 G MG MG . B MG 301 1_555 B OG1 THR 52 B THR 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc14 G MG MG . B MG 301 1_555 L O HOH . B HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc15 G MG MG . B MG 301 1_555 J O2B GSP . B GSP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc16 G MG MG . B MG 301 1_555 B OE2 GLU 125 B GLU 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc17 G MG MG . B MG 301 1_555 B OD2 ASP 80 B ASP 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc18 H ZN ZN . B ZN 402 1_555 B SG CYS 100 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc19 H ZN ZN . B ZN 402 1_555 L O HOH . B HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc20 H ZN ZN . B ZN 402 1_555 B ND1 HIS 101 B HIS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc21 H ZN ZN . B ZN 402 1_555 B SG CYS 132 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc22 I ZN ZN . B ZN 404 1_555 B NE2 HIS 109 B HIS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc23 I ZN ZN . B ZN 404 1_555 B NE2 HIS 105 B HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc24 E ZN ZN . A ZN 403 1_555 B NE2 HIS 109 B HIS 104 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc25 E ZN ZN . A ZN 403 1_555 B NE2 HIS 105 B HIS 100 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc26 I ZN ZN . B ZN 404 1_555 A NE2 HIS 109 A HIS 104 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc27 I ZN ZN . B ZN 404 1_555 A NE2 HIS 105 A HIS 100 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2HF8 _atom_sites.fract_transf_matrix[1][1] 0.023191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 301 MG MG . D 3 ZN A 1 401 401 ZN ZN . E 3 ZN A 1 403 403 ZN ZN . F 4 GSP A 1 300 300 GSP GSP . G 2 MG B 1 301 301 MG MG . H 3 ZN B 1 402 402 ZN ZN . I 3 ZN B 1 404 404 ZN ZN . J 4 GSP B 1 300 300 GSP GSP . K 5 HOH A 1 404 6 HOH HOH . K 5 HOH A 2 405 8 HOH HOH . K 5 HOH A 3 406 9 HOH HOH . K 5 HOH A 4 407 12 HOH HOH . K 5 HOH A 5 408 13 HOH HOH . K 5 HOH A 6 409 15 HOH HOH . K 5 HOH A 7 410 19 HOH HOH . K 5 HOH A 8 411 20 HOH HOH . K 5 HOH A 9 412 24 HOH HOH . K 5 HOH A 10 413 26 HOH HOH . K 5 HOH A 11 414 27 HOH HOH . K 5 HOH A 12 415 29 HOH HOH . K 5 HOH A 13 416 30 HOH HOH . K 5 HOH A 14 417 31 HOH HOH . K 5 HOH A 15 418 32 HOH HOH . K 5 HOH A 16 419 33 HOH HOH . K 5 HOH A 17 420 35 HOH HOH . K 5 HOH A 18 421 37 HOH HOH . K 5 HOH A 19 422 38 HOH HOH . K 5 HOH A 20 423 40 HOH HOH . K 5 HOH A 21 424 43 HOH HOH . K 5 HOH A 22 425 44 HOH HOH . K 5 HOH A 23 426 45 HOH HOH . K 5 HOH A 24 427 46 HOH HOH . K 5 HOH A 25 428 48 HOH HOH . K 5 HOH A 26 429 51 HOH HOH . K 5 HOH A 27 430 55 HOH HOH . K 5 HOH A 28 431 56 HOH HOH . K 5 HOH A 29 432 58 HOH HOH . K 5 HOH A 30 433 59 HOH HOH . K 5 HOH A 31 434 61 HOH HOH . K 5 HOH A 32 435 62 HOH HOH . K 5 HOH A 33 436 66 HOH HOH . K 5 HOH A 34 437 69 HOH HOH . K 5 HOH A 35 438 73 HOH HOH . K 5 HOH A 36 439 76 HOH HOH . K 5 HOH A 37 440 77 HOH HOH . K 5 HOH A 38 441 78 HOH HOH . K 5 HOH A 39 442 80 HOH HOH . K 5 HOH A 40 443 83 HOH HOH . K 5 HOH A 41 444 84 HOH HOH . K 5 HOH A 42 445 86 HOH HOH . K 5 HOH A 43 446 87 HOH HOH . K 5 HOH A 44 447 91 HOH HOH . K 5 HOH A 45 448 92 HOH HOH . K 5 HOH A 46 449 93 HOH HOH . K 5 HOH A 47 450 94 HOH HOH . K 5 HOH A 48 451 98 HOH HOH . K 5 HOH A 49 452 99 HOH HOH . K 5 HOH A 50 453 100 HOH HOH . K 5 HOH A 51 454 102 HOH HOH . K 5 HOH A 52 455 103 HOH HOH . K 5 HOH A 53 456 104 HOH HOH . K 5 HOH A 54 457 108 HOH HOH . K 5 HOH A 55 458 112 HOH HOH . K 5 HOH A 56 459 114 HOH HOH . K 5 HOH A 57 460 116 HOH HOH . K 5 HOH A 58 461 118 HOH HOH . K 5 HOH A 59 462 120 HOH HOH . K 5 HOH A 60 463 122 HOH HOH . K 5 HOH A 61 464 123 HOH HOH . K 5 HOH A 62 465 124 HOH HOH . K 5 HOH A 63 466 125 HOH HOH . K 5 HOH A 64 467 126 HOH HOH . K 5 HOH A 65 468 127 HOH HOH . K 5 HOH A 66 469 130 HOH HOH . K 5 HOH A 67 470 131 HOH HOH . K 5 HOH A 68 471 132 HOH HOH . K 5 HOH A 69 472 133 HOH HOH . L 5 HOH B 1 405 4 HOH HOH . L 5 HOH B 2 406 5 HOH HOH . L 5 HOH B 3 407 10 HOH HOH . L 5 HOH B 4 408 11 HOH HOH . L 5 HOH B 5 409 14 HOH HOH . L 5 HOH B 6 410 16 HOH HOH . L 5 HOH B 7 411 17 HOH HOH . L 5 HOH B 8 412 18 HOH HOH . L 5 HOH B 9 413 21 HOH HOH . L 5 HOH B 10 414 22 HOH HOH . L 5 HOH B 11 415 23 HOH HOH . L 5 HOH B 12 416 25 HOH HOH . L 5 HOH B 13 417 28 HOH HOH . L 5 HOH B 14 418 34 HOH HOH . L 5 HOH B 15 419 36 HOH HOH . L 5 HOH B 16 420 39 HOH HOH . L 5 HOH B 17 421 41 HOH HOH . L 5 HOH B 18 422 42 HOH HOH . L 5 HOH B 19 423 47 HOH HOH . L 5 HOH B 20 424 49 HOH HOH . L 5 HOH B 21 425 50 HOH HOH . L 5 HOH B 22 426 52 HOH HOH . L 5 HOH B 23 427 53 HOH HOH . L 5 HOH B 24 428 54 HOH HOH . L 5 HOH B 25 429 57 HOH HOH . L 5 HOH B 26 430 60 HOH HOH . L 5 HOH B 27 431 63 HOH HOH . L 5 HOH B 28 432 64 HOH HOH . L 5 HOH B 29 433 65 HOH HOH . L 5 HOH B 30 434 67 HOH HOH . L 5 HOH B 31 435 68 HOH HOH . L 5 HOH B 32 436 70 HOH HOH . L 5 HOH B 33 437 71 HOH HOH . L 5 HOH B 34 438 72 HOH HOH . L 5 HOH B 35 439 74 HOH HOH . L 5 HOH B 36 440 75 HOH HOH . L 5 HOH B 37 441 79 HOH HOH . L 5 HOH B 38 442 81 HOH HOH . L 5 HOH B 39 443 82 HOH HOH . L 5 HOH B 40 444 85 HOH HOH . L 5 HOH B 41 445 88 HOH HOH . L 5 HOH B 42 446 89 HOH HOH . L 5 HOH B 43 447 90 HOH HOH . L 5 HOH B 44 448 95 HOH HOH . L 5 HOH B 45 449 96 HOH HOH . L 5 HOH B 46 450 97 HOH HOH . L 5 HOH B 47 451 101 HOH HOH . L 5 HOH B 48 452 105 HOH HOH . L 5 HOH B 49 453 106 HOH HOH . L 5 HOH B 50 454 107 HOH HOH . L 5 HOH B 51 455 109 HOH HOH . L 5 HOH B 52 456 110 HOH HOH . L 5 HOH B 53 457 111 HOH HOH . L 5 HOH B 54 458 113 HOH HOH . L 5 HOH B 55 459 115 HOH HOH . L 5 HOH B 56 460 117 HOH HOH . L 5 HOH B 57 461 119 HOH HOH . L 5 HOH B 58 462 121 HOH HOH . L 5 HOH B 59 463 128 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.332 _atom_site.Cartn_y 18.587 _atom_site.Cartn_z -8.823 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 23.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #